Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0006693

Physical Location & Seq

Genomic Coordinates Reverse (-)

60352911 .. 60357592

Gene Structure 4682 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ40544

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2475 bp

ATGCTCAATCAAATCCACAAATGGAAGAAGCCCATCCATTTTCTTCAAAAATCTCGAACCCTCTCTTCCCTCATCTTCACTAAATCCTCAGCCTCTGCCGCAAAGCCCACCGCCGGCCCCAGCAGCACAACCAATGTCTCCGAACTCATCACCGGCCTGAGAATCTTGGGTTTGGGTCGAATTAACGGTGACCATTACTATAGGAATATTATTTCGACTTTGAATCAGACCCAGGTGGATATTATTATCGAAAGGTTGAGCCTTGAGGACCCTGAAGCGGGTTTCGGTTTCTTCAATTTGTTGAGGAATGAGTACGGTTTTCGGCCTTCAAGGGTTTCGAGTTTCGCAGTTTCTCATGTTTTAGCGGCGAAAAGGTGGTTTGAGGAGTTGCGTTTGGTTATGAAGCAAATGGTAGAGGAGGAGGAAGGTTCTGGTTCTGCAACATCACTTTGTGAGCTGCTATTGAGTAGATTTAGGGACTGGGACTCGAGTGGTGTAGTGTGGGATGTTTTGGCGTTTTCTTATTCGAGAAGTGAGATGGTTTATGATGCCCTGACTGTTCTTGCTAAGATGAAAGATCTGGATTTGAAAGTTTCCATGGCAACGTATAATTGCTTGTTGCATAATTTAAGGCACACGGATATCATGTGGAATGTGTATGATGAAATTAAGGACAGTGGAACTCCTCAGAGTGAGTACACTACTTCTATACTTATAGATGGACTGTGTGAGCAAGCCAGCATACGAGATGCAGTTTCGTTTCTCTTGGATGCTCAAAGGAAGGAGAATGGGCCTTCAGTTGTTCCGTTCAATACCATTATGTCGAGGTTCTGTAAATTGGGTTTTGTGGATATTGCCAAGTCGTTTTTTTGTATGATATTCAAGTATGGACTACTTCCTGATTCGTACAGTTATAATATTCTTATTCATGGGCTGTGTGTAGCAGGTTCATTGGAAGAAGCTTTGGAGTTTACAAAAGACATGGAGAGGCATGGGCTACACCCTGACACAGTGACCTACAATATTCTTTGTAAAGGGTTTCGTCTACTTGGTTTAATGACTGGAGCTCAGCAGGTCATTCAGAAAATGTTGGTTAAAGGGTTAAATCCTGATCATGTTACATATACAATTCTAATATGTGGGCACTGCCATTCTGGGAATATTGAGGAAGCCCTTAAGCTGCGGGAAGAGATGCTTTCAAGGGGTTTTCAATTGAGTGTCATTTTGTATAGTGTACTGCTTAGCAGTTTGTGTAAAAGTGGACGAATAGAAGAAACATTGAGATTGCATTATGAGATGGAAGCTGTTGGCTTGGAACCAGATCTTATAACATGTTCTATTCTCATTCATGGCCTGTGCAAGCAAGGAAGTGTTCAAAGGGCTATTGAAATATATAGAGAAATGTACTTGAAGAGAATACTTCCCCATTACTCTGCACACCGTGCTATTCTTTTAGGTCTGCGCAAGAAAGGAGATATATCTGAGGCAAGGAAGTATTTTGATACTCTAGCAACAATCACAGAGGATATTGTTTTGTATAATATTATGATGGATGGATATGTAAAACTTGGTAATATTGCAGCAGCCTTACAGTTATATGAACAAGCAGTTGAAAAAGGAATAACTCCTAGTGTTGTCACTTTCAATACGCTTATGTATGGTTTCTGCAATAGTGGAAAACTAGTTGAGGCCCAACGGATGTTGAATATCATTGAGCTGCATGGAATGCTACCCAGTCCAGTTACCTATACGACTCTTATGAATGGCTACTGTGGACAGGGAAACATTCATGGGATGCTTGAATTGCTCCGGGAGATGAAAGCAAAAGCTGTAGATCCAACTCATGTAACTTATACTGTAATTATCAAGGGACTCTGCAGACAGAGGAAGCTGCAAGAGGCTGTCCATGTAGTTGAGGAAATGTATGCTAAGGACCTAACCCCAGATCAGATCACATATAATACCATCATTCAATGTTTCTGCAGAGCTCGAGAGTTGAAGAAAGCTTTTCAGTTGCACAATGAGATGTTAATGCATAATCTCGAGCCTACTCCTGTTACATATAATGTTCTCATCAATGGTCTTTGTGTATATGGTGACCTAAATGATGCTGACAAGCTATTGGTTTTTCTTGACGACCACAACATCAATCTAAGAAAAGTTGCTTATACCACATTAATCAAAGCACATTGTGCAAAGGGTTTTGTACTTAGAGCAGTGGAGCTCTTCGATCAGATGGTGGAGAAAGGATTTGAAATCTCCATAAGAGATTATAGTGCTGTAATTAATAGATTATGCAAAAGGTCTCTAATAACTGAAGCAAAATATTTTTTCTGTATGATGCTATCTGATGGGATATCTCCTGATCATGAGCTTTGTAAGGTGATGCTCAATGCTTTCTGTCAAGATGGTGATTCAAGTTCAGTATATGAACTCCTTGCTGAGATGATCAAATCTGGCATTCTTCCTGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

824

Amino Acids

93.16

Weight (kDa)

6.43

Isoelectric Point (pI)

42.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	265 - 313	3.7e-11	PPR repeat family
PPR_3	PF13812	297 - 345	4.5e-06	Pentatricopeptide repeat domain
PPR_1	PF12854	297 - 329	1.7e-09	PPR repeat
PPR	PF01535	303 - 333	6.3e-07	PPR repeat
PPR_2	PF13041	304 - 347	4.2e-13	PPR repeat family
PPR_2	PF13041	351 - 384	3.7e-06	PPR repeat family
PPR_1	PF12854	366 - 398	8e-12	PPR repeat
PPR_2	PF13041	370 - 419	3.3e-13	PPR repeat family
PPR	PF01535	373 - 403	1.2e-08	PPR repeat
PPR_2	PF13041	406 - 454	1.3e-11	PPR repeat family
PPR_1	PF12854	437 - 468	1.2e-08	PPR repeat
PPR_3	PF13812	507 - 553	5.5e-06	Pentatricopeptide repeat domain
PPR_2	PF13041	509 - 557	1.6e-14	PPR repeat family
PPR_1	PF12854	539 - 569	4.2e-09	PPR repeat
PPR_2	PF13041	543 - 591	1.2e-12	PPR repeat family
PPR_3	PF13812	574 - 623	1.2e-07	Pentatricopeptide repeat domain
PPR_1	PF12854	575 - 607	5.3e-07	PPR repeat
PPR_2	PF13041	578 - 627	2e-16	PPR repeat family
PPR	PF01535	581 - 609	2.7e-06	PPR repeat
TPR_24	PF23276	582 - 675	1.2e-09	Fungal tetratrico peptide repeats
PPR_long	PF17177	599 - 725	2.1e-13	Pentacotripeptide-repeat region of PRORP
PPR_1	PF12854	611 - 641	1.1e-08	PPR repeat
PPR_2	PF13041	616 - 662	1.4e-13	PPR repeat family
TPR_24	PF23276	636 - 745	2.5e-07	Fungal tetratrico peptide repeats
PPR_3	PF13812	637 - 693	8e-10	Pentatricopeptide repeat domain
PPR_1	PF12854	644 - 676	1.5e-11	PPR repeat
PPR_2	PF13041	648 - 696	7.7e-18	PPR repeat family
PPR	PF01535	651 - 680	1.2e-06	PPR repeat
PPR_1	PF12854	680 - 708	2.7e-06	PPR repeat
PPR_1	PF12854	721 - 747	4.3e-06	PPR repeat
PPR	PF01535	721 - 751	4.2e-07	PPR repeat
PPR_2	PF13041	721 - 767	5.2e-09	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0006693)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13630 AT1G13630 AT1G13630 AT1G13630 AT1G13630 AT1G13630
fragaria_vesca	FvH4_4g29120
malus_domestica	MD13G1055600.v1.1 MD16G1054700.v1.1
prunus_persica	Prupe.2G062100_v2.0.a1 Prupe.2G062200_v2.0.a1 Prupe.2G062300_v2.0.a1 Prupe.7G020200_v2.0.a1 Prupe.7G020300_v2.0.a1
pyrus_communis	pycom16g04760
rosa_chinensis	RchiOBHm_Chr4g0437181
rosa_laevigata	RLG00000006457
rosa_multiflora	Rmu_co8390257.1_g000001 Rmu_sc0000591.1_g000006
rosa_roxburghii	Rroxscaffold_5G00378320
rosa_rugosa	Rorug04G0298500.1
rosa_samantha	Rh4AG353500 Rh4BG363300 Rh4CG377500 Rh4DG357300
rosa_wichuraiana	Rw4G030970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	915, 1328
Acc16I	TGCGCA	1 cut(s)	1463
Acc36I	ACCTGC	2 cut(s)	935, 1063
AccI	GTMKAC	1 cut(s)	1045
AciI	CCGC	5 cut(s)	99, 111, 278, 365, 1183
AclWI	GGATC	1 cut(s)	1829
AcuI	CTGAAG	3 cut(s)	294, 780, 2337
AdeI	CACNNNGTG	3 cut(s)	452, 1442, 2192
AfaI	GTAC	6 cut(s)	314, 698, 908, 1236, 1406, 2208
AfiI	CCNNNNNNNGG	3 cut(s)	113, 277, 278
AflII	CTTAAG	1 cut(s)	1175
AflIII	ACRYGT	1 cut(s)	1331
AhlI	ACTAGT	1 cut(s)	1681
AjnI	CCWGG	1 cut(s)	231
Alw21I	GWGCWC	3 cut(s)	1069, 1990, 2226
Alw26I	GTCTC	2 cut(s)	142, 2310
AlwI	GGATC	1 cut(s)	1829
AlwNI	CAGNNNCTG	1 cut(s)	95
Ama87I	CYCGRG	3 cut(s)	487, 1989, 2042
AoxI	GGCC	6 cut(s)	115, 154, 323, 791, 1351, 1689
ApeKI	GCWGC	7 cut(s)	123, 457, 1180, 1580, 1583, 1717, 1891
AseI	ATTAAT	2 cut(s)	2177, 2286
AspLEI	GCGC	1 cut(s)	1464
AspS9I	GGNCC	5 cut(s)	116, 268, 791, 1690, 1933
AsuC2I	CCSGG	1 cut(s)	1811
AsuHPI	GGTGA	5 cut(s)	142, 200, 2108, 2395, 2423
AvaI	CYCGRG	3 cut(s)	487, 1989, 2042
AvaII	GGWCC	2 cut(s)	268, 1933
BaeGI	GKGCMC	1 cut(s)	1146
BanII	GRGCYC	3 cut(s)	1069, 1990, 2226
Bbv12I	GWGCWC	3 cut(s)	1069, 1990, 2226
BbvCI	CCTCAGC	1 cut(s)	88
BbvI	GCAGC	7 cut(s)	135, 444, 1167, 1592, 1595, 1704, 1878
BciT130I	CCWGG	1 cut(s)	233
BclI	TGATCA	3 cut(s)	1111, 2365, 2448
BcnI	CCSGG	1 cut(s)	1811
BcoDI	GTCTC	2 cut(s)	142, 2310
BcuI	ACTAGT	1 cut(s)	1681
BfaI	CTAG	3 cut(s)	1508, 1629, 1682
BfmI	CTRYAG	4 cut(s)	199, 1830, 1876, 1981
BfrI	CTTAAG	1 cut(s)	1175
BfuAI	ACCTGC	2 cut(s)	935, 1063
BglII	AGATCT	2 cut(s)	577, 1321
BisI	GCNGC	9 cut(s)	99, 124, 366, 458, 1181, 1581, 1584, 1718, 1892
BlpI	GCTNAGC	2 cut(s)	1068, 1241
BlsI	GCNGC	9 cut(s)	100, 125, 367, 459, 1182, 1582, 1585, 1719, 1893
Bme1390I	CCNGG	2 cut(s)	233, 1811
Bme18I	GGWCC	2 cut(s)	268, 1933
BmeT110I	CYCGRG	3 cut(s)	487, 1989, 2042
BmgT120I	GGNCC	5 cut(s)	116, 268, 791, 1690, 1933
BmiI	GGNNCC	3 cut(s)	118, 270, 1317
BmrFI	CCNGG	2 cut(s)	233, 1811
BmrI	ACTGGG	2 cut(s)	490, 1728
BmsI	GCATC	8 cut(s)	538, 739, 760, 1182, 1785, 2098, 2331, 2376
BmuI	ACTGGG	2 cut(s)	490, 1728
BpmI	CTGGAG	1 cut(s)	1083
Bpu10I	CCTNAGC	2 cut(s)	88, 1929
Bpu1102I	GCTNAGC	2 cut(s)	1068, 1241
BpuEI	CTTGAG	1 cut(s)	284
BpuMI	CCSGG	1 cut(s)	1811
BsaI	GGTCTC	1 cut(s)	2310
BsaJI	CCNNGG	2 cut(s)	231, 597
Bsc4I	CCNNNNNNNGG	3 cut(s)	113, 277, 278
Bse118I	RCCGGY	2 cut(s)	113, 152
Bse1I	ACTGG	4 cut(s)	485, 1066, 1734, 1739
BseBI	CCWGG	1 cut(s)	233
BseDI	CCNNGG	2 cut(s)	231, 597
BseGI	GGATG	6 cut(s)	33, 511, 775, 1558, 1704, 1800
BseLI	CCNNNNNNNGG	3 cut(s)	113, 277, 278
BseMII	CTCAG	6 cut(s)	102, 149, 701, 1082, 1473, 2433
BseNI	ACTGG	4 cut(s)	485, 1066, 1734, 1739
BseRI	GAGGAG	4 cut(s)	398, 431, 434, 675
BseSI	GKGCMC	1 cut(s)	1146
BseXI	GCAGC	7 cut(s)	135, 444, 1167, 1592, 1595, 1704, 1878
BseYI	CCCAGC	1 cut(s)	119
BsgI	GTGCAG	1 cut(s)	1419
BshFI	GGCC	6 cut(s)	117, 156, 325, 793, 1353, 1691
BsiHKAI	GWGCWC	3 cut(s)	1069, 1990, 2226
BsiHKCI	CYCGRG	3 cut(s)	487, 1989, 2042
BsiSI	CCGG	3 cut(s)	114, 153, 1810
BslFI	GGGAC	3 cut(s)	491, 497, 1884
BslI	CCNNNNNNNGG	3 cut(s)	113, 277, 278
BsmAI	GTCTC	2 cut(s)	142, 2310
BsmFI	GGGAC	3 cut(s)	491, 497, 1884
BsmI	GAATGC	2 cut(s)	1731, 2460
BsnI	GGCC	6 cut(s)	117, 156, 325, 793, 1353, 1691
Bso31I	GGTCTC	1 cut(s)	2310
BsoBI	CYCGRG	3 cut(s)	487, 1989, 2042
Bsp1286I	GDGCHC	4 cut(s)	1069, 1146, 1990, 2226
Bsp143I	GATC	9 cut(s)	577, 1111, 1321, 1834, 1945, 1950, 2230, 2365, 2448
Bsp1720I	GCTNAGC	2 cut(s)	1068, 1241
Bsp19I	CCATGG	1 cut(s)	597
BspACI	CCGC	5 cut(s)	99, 111, 278, 365, 1183
BspANI	GGCC	6 cut(s)	117, 156, 325, 793, 1353, 1691
BspCNI	CTCAG	6 cut(s)	101, 150, 700, 1081, 1474, 2434
BspHI	TCATGA	1 cut(s)	2368
BspLI	GGNNCC	3 cut(s)	118, 270, 1317
BspMAI	CTGCAG	2 cut(s)	1880, 1985
BspMI	ACCTGC	2 cut(s)	935, 1063
BspPI	GGATC	1 cut(s)	1829
BspQI	GCTCTTC	1 cut(s)	2231
BspTI	CTTAAG	1 cut(s)	1175
BspTNI	GGTCTC	1 cut(s)	2310
BsrFI	RCCGGY	2 cut(s)	113, 152
BsrI	ACTGG	4 cut(s)	485, 1066, 1734, 1739
BssAI	RCCGGY	2 cut(s)	113, 152
BssECI	CCNNGG	2 cut(s)	231, 597
BssMI	GATC	9 cut(s)	577, 1111, 1321, 1834, 1945, 1950, 2230, 2365, 2448
BssT1I	CCWWGG	1 cut(s)	597
Bst2UI	CCWGG	1 cut(s)	233
Bst6I	CTCTTC	4 cut(s)	70, 1182, 1406, 2231
BstAFI	CTTAAG	1 cut(s)	1175
BstAPI	GCANNNNNTGC	3 cut(s)	1442, 1726, 2192
BstC8I	GCNNGC	4 cut(s)	115, 735, 739, 1361
BstDSI	CCRYGG	1 cut(s)	597
BstEII	GGTNACC	2 cut(s)	188, 2096
BstF5I	GGATG	6 cut(s)	33, 511, 775, 1558, 1704, 1800
BstHHI	GCGC	1 cut(s)	1464
BstKTI	GATC	9 cut(s)	580, 1114, 1324, 1837, 1948, 1953, 2233, 2368, 2451
BstMAI	GTCTC	2 cut(s)	142, 2310
BstMBI	GATC	9 cut(s)	577, 1111, 1321, 1834, 1945, 1950, 2230, 2365, 2448
BstMWI	GCNNNNNNNGC	6 cut(s)	98, 123, 1442, 1726, 1804, 2192
BstNI	CCWGG	1 cut(s)	233
BstNSI	RCATGY	1 cut(s)	1335
BstPI	GGTNACC	2 cut(s)	188, 2096
BstSCI	CCNGG	2 cut(s)	231, 1809
BstSFI	CTRYAG	4 cut(s)	199, 1830, 1876, 1981
BstSLI	GKGCMC	1 cut(s)	1146
BstV1I	GCAGC	7 cut(s)	135, 444, 1167, 1592, 1595, 1704, 1878
BstX2I	RGATCY	3 cut(s)	577, 1321, 1834
BstYI	RGATCY	3 cut(s)	577, 1321, 1834
BsuRI	GGCC	6 cut(s)	117, 156, 325, 793, 1353, 1691
BtgI	CCRYGG	1 cut(s)	597
BtsCI	GGATG	6 cut(s)	33, 511, 775, 1558, 1704, 1800
BtsI	GCAGTG	2 cut(s)	1144, 2223
BtsIMutI	CAGTG	4 cut(s)	682, 1017, 1144, 2223
BveI	ACCTGC	2 cut(s)	935, 1063
Cac8I	GCNNGC	4 cut(s)	115, 735, 739, 1361
CaiI	CAGNNNCTG	1 cut(s)	95
CciI	TCATGA	1 cut(s)	2368
CfoI	GCGC	1 cut(s)	1464
Cfr10I	RCCGGY	2 cut(s)	113, 152
Cfr13I	GGNCC	5 cut(s)	116, 268, 791, 1690, 1933
Csp6I	GTAC	6 cut(s)	313, 697, 907, 1235, 1405, 2207
CviQI	GTAC	6 cut(s)	313, 697, 907, 1235, 1405, 2207
DpnI	GATC	9 cut(s)	579, 1113, 1323, 1836, 1947, 1952, 2232, 2367, 2450
DpnII	GATC	9 cut(s)	577, 1111, 1321, 1834, 1945, 1950, 2230, 2365, 2448
DraIII	CACNNNGTG	3 cut(s)	452, 1442, 2192
Eam1104I	CTCTTC	4 cut(s)	70, 1182, 1406, 2231
EarI	CTCTTC	4 cut(s)	70, 1182, 1406, 2231
Ecl136II	GAGCTC	3 cut(s)	1067, 1988, 2224
Eco130I	CCWWGG	1 cut(s)	597
Eco24I	GRGCYC	3 cut(s)	1069, 1990, 2226
Eco31I	GGTCTC	1 cut(s)	2310
Eco32I	GATATC	2 cut(s)	643, 2358
Eco47I	GGWCC	2 cut(s)	268, 1933
Eco53kI	GAGCTC	3 cut(s)	1067, 1988, 2224
Eco57I	CTGAAG	3 cut(s)	294, 780, 2337
Eco88I	CYCGRG	3 cut(s)	487, 1989, 2042
Eco91I	GGTNACC	2 cut(s)	188, 2096
EcoICRI	GAGCTC	3 cut(s)	1067, 1988, 2224
EcoO109I	RGGNCCY	2 cut(s)	268, 1933
EcoO65I	GGTNACC	2 cut(s)	188, 2096
EcoRII	CCWGG	1 cut(s)	231
EcoRV	GATATC	2 cut(s)	643, 2358
EcoT14I	CCWWGG	1 cut(s)	597
EcoT22I	ATGCAT	1 cut(s)	2037
EcoT38I	GRGCYC	3 cut(s)	1069, 1990, 2226
ErhI	CCWWGG	1 cut(s)	597
FalI	AAGNNNNNCTT	2 cut(s)	1179, 1211
FaqI	GGGAC	3 cut(s)	491, 497, 1884
FauI	CCCGC	2 cut(s)	271, 1176
FbaI	TGATCA	3 cut(s)	1111, 2365, 2448
FblI	GTMKAC	1 cut(s)	1045
Fnu4HI	GCNGC	9 cut(s)	99, 124, 366, 458, 1181, 1581, 1584, 1718, 1892
FokI	GGATG	6 cut(s)	20, 518, 782, 1565, 1711, 1807
FriOI	GRGCYC	3 cut(s)	1069, 1990, 2226
Fsp4HI	GCNGC	9 cut(s)	99, 124, 366, 458, 1181, 1581, 1584, 1718, 1892
FspBI	CTAG	3 cut(s)	1508, 1629, 1682
FspI	TGCGCA	1 cut(s)	1463
GlaI	GCGC	1 cut(s)	1463
GluI	GCNGC	9 cut(s)	99, 124, 366, 458, 1181, 1581, 1584, 1718, 1892
GsaI	CCCAGC	1 cut(s)	123
GsuI	CTGGAG	1 cut(s)	1083
HaeIII	GGCC	6 cut(s)	117, 156, 325, 793, 1353, 1691
HapII	CCGG	3 cut(s)	114, 153, 1810
HhaI	GCGC	1 cut(s)	1464
Hin6I	GCGC	1 cut(s)	1462
HinP1I	GCGC	1 cut(s)	1462
HindIII	AAGCTT	2 cut(s)	960, 2004
HinfI	GANTC	7 cut(s)	162, 223, 485, 902, 1753, 1872, 2414
HpaII	CCGG	3 cut(s)	114, 153, 1810
HphI	GGTGA	5 cut(s)	142, 200, 2108, 2395, 2423
Hpy166II	GTNNAC	6 cut(s)	699, 972, 1046, 1235, 1262, 1775
Hpy188I	TCNGA	8 cut(s)	142, 228, 690, 1083, 1483, 1950, 2235, 2350
Hpy8I	GTNNAC	6 cut(s)	699, 972, 1046, 1235, 1262, 1775
HpyAV	CCTTC	4 cut(s)	336, 419, 775, 804
HpyCH4IV	ACGT	1 cut(s)	605
HpyF10VI	GCNNNNNNNGC	6 cut(s)	98, 123, 1442, 1726, 1804, 2192
HpySE526I	ACGT	1 cut(s)	605
HspAI	GCGC	1 cut(s)	1462
KroI	GCCGGC	1 cut(s)	113
KroNI	GCCGGC	1 cut(s)	115
Ksp22I	TGATCA	3 cut(s)	1111, 2365, 2448
Kzo9I	GATC	9 cut(s)	577, 1111, 1321, 1834, 1945, 1950, 2230, 2365, 2448
LguI	GCTCTTC	1 cut(s)	2231
LmnI	GCTCC	3 cut(s)	1064, 1812, 2221
Lsp1109I	GCAGC	7 cut(s)	135, 444, 1167, 1592, 1595, 1704, 1878
LweI	GCATC	8 cut(s)	538, 739, 760, 1182, 1785, 2098, 2331, 2376
MaeI	CTAG	3 cut(s)	1508, 1629, 1682
MaeII	ACGT	1 cut(s)	605
MaeIII	GTNAC	8 cut(s)	188, 1012, 1117, 1636, 1741, 1846, 2056, 2096
MalI	GATC	9 cut(s)	579, 1113, 1323, 1836, 1947, 1952, 2232, 2367, 2450
MboI	GATC	9 cut(s)	577, 1111, 1321, 1834, 1945, 1950, 2230, 2365, 2448
MfeI	CAATTG	1 cut(s)	1211
MflI	RGATCY	3 cut(s)	577, 1321, 1834
MhlI	GDGCHC	4 cut(s)	1069, 1146, 1990, 2226
MlyI	GAGTC	3 cut(s)	479, 1747, 1866
MmeI	TCCRAC	1 cut(s)	1862
Mph1103I	ATGCAT	1 cut(s)	2037
MroNI	GCCGGC	1 cut(s)	113
MspCI	CTTAAG	1 cut(s)	1175
MspI	CCGG	3 cut(s)	114, 153, 1810
MspR9I	CCNGG	2 cut(s)	233, 1811
MunI	CAATTG	1 cut(s)	1211
Mva1269I	GAATGC	2 cut(s)	1731, 2460
MvaI	CCWGG	1 cut(s)	233
MwoI	GCNNNNNNNGC	6 cut(s)	98, 123, 1442, 1726, 1804, 2192
NaeI	GCCGGC	1 cut(s)	115
NciI	CCSGG	1 cut(s)	1811
NcoI	CCATGG	1 cut(s)	597
NdeII	GATC	9 cut(s)	577, 1111, 1321, 1834, 1945, 1950, 2230, 2365, 2448
NgoMIV	GCCGGC	1 cut(s)	113
NlaIV	GGNNCC	3 cut(s)	118, 270, 1317
NmuCI	GTSAC	4 cut(s)	188, 1012, 1636, 2096
NsbI	TGCGCA	1 cut(s)	1463
NsiI	ATGCAT	1 cut(s)	2037
NspI	RCATGY	1 cut(s)	1335
PaeR7I	CTCGAG	3 cut(s)	487, 1989, 2042
PagI	TCATGA	1 cut(s)	2368
PciI	ACATGT	1 cut(s)	1331
PciSI	GCTCTTC	1 cut(s)	2231
PctI	GAATGC	2 cut(s)	1731, 2460
PdiI	GCCGGC	1 cut(s)	115
PfeI	GAWTC	4 cut(s)	162, 223, 902, 2414
PfoI	TCCNGGA	1 cut(s)	1809
PkrI	GCNGC	9 cut(s)	100, 125, 367, 459, 1182, 1582, 1585, 1719, 1893
PleI	GAGTC	3 cut(s)	479, 1747, 1866
PpsI	GAGTC	3 cut(s)	479, 1747, 1866
PpuMI	RGGWCCY	2 cut(s)	268, 1933
PscI	ACATGT	1 cut(s)	1331
PshBI	ATTAAT	2 cut(s)	2177, 2286
PsiI	TTATAA	2 cut(s)	915, 1328
Psp124BI	GAGCTC	3 cut(s)	1069, 1990, 2226
Psp5II	RGGWCCY	2 cut(s)	268, 1933
Psp6I	CCWGG	1 cut(s)	231
PspEI	GGTNACC	2 cut(s)	188, 2096
PspFI	CCCAGC	1 cut(s)	119
PspGI	CCWGG	1 cut(s)	231
PspN4I	GGNNCC	3 cut(s)	118, 270, 1317
PspPI	GGNCC	5 cut(s)	116, 268, 791, 1690, 1933
PspPPI	RGGWCCY	2 cut(s)	268, 1933
PspXI	VCTCGAGB	1 cut(s)	487
PstI	CTGCAG	2 cut(s)	1880, 1985
PstNI	CAGNNNCTG	1 cut(s)	95
PsuI	RGATCY	3 cut(s)	577, 1321, 1834
RsaI	GTAC	6 cut(s)	314, 698, 908, 1236, 1406, 2208
RsaNI	GTAC	6 cut(s)	313, 697, 907, 1235, 1405, 2207
SacI	GAGCTC	3 cut(s)	1069, 1990, 2226
SapI	GCTCTTC	1 cut(s)	2231
SatI	GCNGC	9 cut(s)	99, 124, 366, 458, 1181, 1581, 1584, 1718, 1892
Sau3AI	GATC	9 cut(s)	577, 1111, 1321, 1834, 1945, 1950, 2230, 2365, 2448
Sau96I	GGNCC	5 cut(s)	116, 268, 791, 1690, 1933
SchI	GAGTC	3 cut(s)	479, 1747, 1866
ScrFI	CCNGG	2 cut(s)	233, 1811
SduI	GDGCHC	4 cut(s)	1069, 1146, 1990, 2226
SfaNI	GCATC	8 cut(s)	538, 739, 760, 1182, 1785, 2098, 2331, 2376
SfcI	CTRYAG	4 cut(s)	199, 1830, 1876, 1981
Sfr274I	CTCGAG	3 cut(s)	487, 1989, 2042
SinI	GGWCC	2 cut(s)	268, 1933
SlaI	CTCGAG	3 cut(s)	487, 1989, 2042
SmlI	CTYRAG	5 cut(s)	263, 487, 1175, 1989, 2042
SmoI	CTYRAG	5 cut(s)	263, 487, 1175, 1989, 2042
SpeI	ACTAGT	1 cut(s)	1681
SsiI	CCGC	5 cut(s)	99, 111, 278, 365, 1183
SspI	AATATT	7 cut(s)	208, 919, 1024, 1162, 1543, 1576, 2327
SspMI	CTAG	3 cut(s)	1508, 1629, 1682
SstI	GAGCTC	3 cut(s)	1069, 1990, 2226
StyD4I	CCNGG	2 cut(s)	231, 1809
StyI	CCWWGG	1 cut(s)	597
TaiI	ACGT	1 cut(s)	608
TatI	WGTACW	4 cut(s)	696, 1234, 1404, 2206
TauI	GCSGC	2 cut(s)	101, 368
TfiI	GAWTC	4 cut(s)	162, 223, 902, 2414
TscAI	CASTG	4 cut(s)	682, 1017, 1151, 2223
TseFI	GTSAC	4 cut(s)	188, 1012, 1636, 2096
TseI	GCWGC	7 cut(s)	123, 457, 1180, 1580, 1583, 1717, 1891
Tsp45I	GTSAC	4 cut(s)	188, 1012, 1636, 2096
TspGWI	ACGGA	3 cut(s)	653, 795, 1711
TspRI	CASTG	4 cut(s)	682, 1017, 1151, 2223
Vha464I	CTTAAG	1 cut(s)	1175
VpaK11BI	GGWCC	2 cut(s)	268, 1933
VspI	ATTAAT	2 cut(s)	2177, 2286
XceI	RCATGY	1 cut(s)	1335
XhoI	CTCGAG	3 cut(s)	487, 1989, 2042
XmiI	GTMKAC	1 cut(s)	1045
XspI	CTAG	3 cut(s)	1508, 1629, 1682
Zsp2I	ATGCAT	1 cut(s)	2037

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.