Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0006693

Physical Location & Seq

Genomic Coordinates Reverse (-)

63057249 .. 63061694

Gene Structure 4446 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG377500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2472 bp

ATGCTCAATCACATCCATAAATGGAAGAAGCCCATCCATTTTCTTCAAAAATTTCGAACCCTCTCTTCCCTCATCTTCACTAAATCCTCAGCCTTTGCCGCAAAGCCCACCGCCGGCCCAAGCAGCACGACCAATGTCTCCGAACTCATCACCGGCCTGAGAATCTTGGGTTTGGGTCGAATTAACGGTGACCATTACTATAGGAATATTATTTCGACTTTGAATCAGACCCAGGTGGATATTATTATCGAAAGGTTGAGCCTTGAGGACCCTGAATCGGGTTTCGGTTTCTTCAATTTGTTGAGGAATGAGTACGGTTTTCGGCCTTCAAGGGTTTCGAGTTTCGCAGTTTCTCATGTTTTAGCGGCGAAAAGGTGGTTTGAGGAGTTGCGTTTGGTTATGAAGAAAATGGTGGAGGAGGAAGGTTCTGGTACTGCAACATCACTGTGTGAGCTGCTATTGAGTAGATTTAGGGACTGGGACTCGAGTGGTGTAGTGTGGGATGTTTTGGCGTTTTCTTATTCGAGAAGTGAGATGGTTTATGATGCCCTGACTGTTCTTGCTAAGATGAAAGATCTGGATTTGAAAGTTTCCACGGCAACGTATAATTGCTTGTTGCATAATTTAAGGCACACGGATATCATGTGGAATGTGTATGATGAAATTAAGGACAGTGGAACTCCTCAGAGTGAGTACACTACTTCTATACTTATAGATGGACTGTGTGAGCAAGCCAGCATACGAGATGCAGTTTCGTTTCTCTTGGATGCTCAAAGGAAGGAGAATGGGCCTTCAGTTGTTCCATTCAATACCATTATGTCGAGGTTCTGTAAATTGGGTTTTGTGGATATTGCCAAGTCGTTTTTTTGTATGATATTCAAGTATGGACTACTTCCTGATTCGTACAGTTATAATATTCTTATTCATGGGCTGTGTGTAGCAGGTTCTTTGGAAGAAGCTTTGGAGTTTACAAAAGACATGGAGAGGCATGGGCTACACCCTGACACAGTGACCTATAATATTCTTTGTAAAGGTTTTCGTCTTCTTGGTTTAATGACTGGAGCTCAGCAGGTCATTCAGAAAATGTTGGTTAAAGGGTTAAATCCTGATCATGTTACATATACAATTCTAATATGTGGGCACTGCCATTCTGGGAATATTGAGGAAGCCCTTAAGCTGCGGGAAGAGATGCTTTCAAGGGGTTTTCAATTGAGTGTCATTTTGTATAGTGTACTGCTTAGCAGTTTGTGTAAAAGTGGACGAATAGAAGAAGCATTGAGATTGCATTATGAGATGGAAGCTGTTGGCTTGGAACCAGATCTTATAACATGTTCTATTCTCATTCATGGCCTATGCAAGCAAGGAAGTGTTCAAAGGGCTATTGAAATATATAGAGAAATGTACTTGAAGAGAATACTTCCCCATTACTCTGCACACCGTGCTATTCTTTTAGGTCTGCGCGAGAAAGGAGATATATCTGAGGCAAGGAAGTATTTTGATACTCTAGCAACAATCACAGAGGATATTGTTTTGTATAATATTATGATGGATGGATATGTAAAACTTGGTAATATTGCAGCAGCCTTACAGTTATATGAACAAGCAGTTGAAAAAGGAATAACTCCTAGTGTTGTCACTTTCAATACGCTTATGTATGGTTTCTGCAACAGTGGAAAACTAGTTGAGGCCCAACGGATGTTGAATACCATTGAACTGCATGGAATGCTACCCAGTCCAGTTACCTATACGACTCTTATGAATGGTTACTGTGGACAGGGAAACATTCATGGGATGCTTGAATTGCTCCGGGAGATGAAAGCAAAAGCTGTAGATCCAACTCATGTAACTTATACTGTAATTATCAAGGGACTCTGCAGACAGAGGAAGCTGCAAGAGGCTGTCCACGTAGTTGAGAAAATGTATGCTAAGGACCTAGCCCCAGATCAGATCACATATAATACCATCATTCAATGTTTCTGCAGAGCTCGAGACTTGAAGAAAGCTTTTCAGTTGCACAATGAGATGTTAATGCATAATCTCGAGCCTACTCCTGTTACATATAATGTTCTCATCAATGGTCTTTGTGTATATGGTGACCTGAATGATGCTGACAGGCTATTGGTTTTTCTTGACGACCACAACATCAATCTAAGAAAAGTTGCTTATACCACATTAATCAAAGCACATTGTGCAAAGGGTAATGCCCTTAGAGCAGTGGAGCTCTTCGATCAGATGGTGGAGAAAGGATTTGAAATCTCCATAAGAGATTATAGTGCTGTAATTAATAGATTATGCAAAAGGTCTCTAATAACTGAAGCAAAATATTTTTTCTGTATGATGCTATCTGATGGGATATCTCCTGATCATGAGCTTTGTAAGGTGATGCTCAATGCTTTCTGTCAAGATGGTGATTCAAGTTCAGTATATGAACTCCTTGCTGAGATGATCAAATCTGGCATTCTTCCTGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

823

Amino Acids

93.04

Weight (kDa)

6.61

Isoelectric Point (pI)

42.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	264 - 312	3.7e-11	PPR repeat family
PPR_3	PF13812	296 - 344	4.5e-06	Pentatricopeptide repeat domain
PPR_1	PF12854	296 - 328	1.7e-09	PPR repeat
PPR	PF01535	302 - 332	6.3e-07	PPR repeat
PPR_2	PF13041	303 - 346	4.2e-13	PPR repeat family
PPR_2	PF13041	350 - 383	3.7e-06	PPR repeat family
PPR_1	PF12854	365 - 397	8e-12	PPR repeat
PPR_2	PF13041	369 - 418	3.3e-13	PPR repeat family
PPR	PF01535	372 - 402	1.2e-08	PPR repeat
PPR_1	PF12854	400 - 433	3.1e-06	PPR repeat
PPR_2	PF13041	405 - 453	6e-13	PPR repeat family
PPR	PF01535	408 - 436	8.4e-06	PPR repeat
PPR_1	PF12854	436 - 467	1.2e-08	PPR repeat
PPR_3	PF13812	506 - 552	5.5e-06	Pentatricopeptide repeat domain
PPR_2	PF13041	508 - 556	1.6e-14	PPR repeat family
PPR_long	PF17177	521 - 648	1.1e-10	Pentacotripeptide-repeat region of PRORP
PPR_1	PF12854	538 - 569	2.7e-09	PPR repeat
PPR_2	PF13041	542 - 590	5.5e-13	PPR repeat family
PPR_3	PF13812	570 - 622	7.4e-08	Pentatricopeptide repeat domain
PPR_1	PF12854	574 - 606	5.3e-07	PPR repeat
PPR_2	PF13041	577 - 626	2e-16	PPR repeat family
PPR	PF01535	580 - 608	2.7e-06	PPR repeat
PPR_long	PF17177	598 - 723	3.2e-13	Pentacotripeptide-repeat region of PRORP
PPR_1	PF12854	610 - 640	2.8e-08	PPR repeat
PPR_2	PF13041	615 - 661	5.4e-13	PPR repeat family
TPR_24	PF23276	635 - 744	3.6e-08	Fungal tetratrico peptide repeats
PPR_3	PF13812	636 - 692	6.3e-10	Pentatricopeptide repeat domain
PPR_1	PF12854	644 - 675	1.6e-11	PPR repeat
PPR_2	PF13041	647 - 695	5.2e-18	PPR repeat family
PPR	PF01535	650 - 679	6e-07	PPR repeat
PPR_1	PF12854	679 - 707	3.6e-06	PPR repeat
PPR_1	PF12854	720 - 746	8.7e-06	PPR repeat
PPR	PF01535	720 - 750	6.5e-07	PPR repeat
PPR_2	PF13041	720 - 766	1.5e-09	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0006693)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13630 AT1G13630 AT1G13630 AT1G13630 AT1G13630 AT1G13630
fragaria_vesca	FvH4_4g29120
malus_domestica	MD13G1055600.v1.1 MD16G1054700.v1.1
prunus_persica	Prupe.2G062100_v2.0.a1 Prupe.2G062200_v2.0.a1 Prupe.2G062300_v2.0.a1 Prupe.7G020200_v2.0.a1 Prupe.7G020300_v2.0.a1
pyrus_communis	pycom16g04760
rosa_chinensis	RchiOBHm_Chr4g0437181
rosa_laevigata	RLG00000006457
rosa_multiflora	Rmu_co8390257.1_g000001 Rmu_sc0000591.1_g000006
rosa_roxburghii	Rroxscaffold_5G00378320
rosa_rugosa	Rorug04G0298500.1
rosa_samantha	Rh4AG353500 Rh4BG363300 Rh4CG377500 Rh4DG357300
rosa_wichuraiana	Rw4G030970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	912, 1325
Acc36I	ACCTGC	2 cut(s)	932, 1060
AccII	CGCG	1 cut(s)	1461
AciI	CCGC	4 cut(s)	99, 111, 365, 1180
AclWI	GGATC	1 cut(s)	1826
AcsI	RAATTY	1 cut(s)	50
AcuI	CTGAAG	2 cut(s)	777, 2334
AdeI	CACNNNGTG	3 cut(s)	449, 1439, 2189
AfaI	GTAC	6 cut(s)	314, 433, 695, 905, 1233, 1403
AfiI	CCNNNNNNNGG	3 cut(s)	113, 277, 278
AflII	CTTAAG	1 cut(s)	1172
AflIII	ACRYGT	1 cut(s)	1328
AhlI	ACTAGT	1 cut(s)	1678
AjnI	CCWGG	1 cut(s)	231
Alw21I	GWGCWC	3 cut(s)	1066, 1987, 2223
Alw26I	GTCTC	3 cut(s)	142, 1983, 2307
AlwI	GGATC	1 cut(s)	1826
Ama87I	CYCGRG	3 cut(s)	484, 1986, 2039
AoxI	GGCC	6 cut(s)	115, 154, 323, 788, 1348, 1686
ApeKI	GCWGC	6 cut(s)	123, 454, 1177, 1577, 1580, 1888
ApoI	RAATTY	1 cut(s)	50
AseI	ATTAAT	2 cut(s)	2174, 2283
AspLEI	GCGC	1 cut(s)	1461
AspS9I	GGNCC	5 cut(s)	116, 268, 788, 1687, 1930
AsuC2I	CCSGG	1 cut(s)	1808
AsuHPI	GGTGA	5 cut(s)	142, 200, 2105, 2392, 2420
AsuII	TTCGAA	1 cut(s)	55
AvaI	CYCGRG	3 cut(s)	484, 1986, 2039
AvaII	GGWCC	2 cut(s)	268, 1930
BaeGI	GKGCMC	1 cut(s)	1143
BanII	GRGCYC	3 cut(s)	1066, 1987, 2223
BbsI	GAAGAC	1 cut(s)	1034
Bbv12I	GWGCWC	3 cut(s)	1066, 1987, 2223
BbvCI	CCTCAGC	1 cut(s)	88
BbvI	GCAGC	6 cut(s)	135, 441, 1164, 1589, 1592, 1875
BceAI	ACGGC	1 cut(s)	612
BciT130I	CCWGG	1 cut(s)	233
BclI	TGATCA	3 cut(s)	1108, 2362, 2445
BcnI	CCSGG	1 cut(s)	1808
BcoDI	GTCTC	3 cut(s)	142, 1983, 2307
BcuI	ACTAGT	1 cut(s)	1678
BfaI	CTAG	4 cut(s)	1505, 1626, 1679, 1934
BfmI	CTRYAG	4 cut(s)	199, 1827, 1873, 1978
BfrI	CTTAAG	1 cut(s)	1172
BfuAI	ACCTGC	2 cut(s)	932, 1060
BglII	AGATCT	2 cut(s)	574, 1318
BisI	GCNGC	8 cut(s)	99, 124, 366, 455, 1178, 1578, 1581, 1889
BlpI	GCTNAGC	2 cut(s)	1065, 1238
BlsI	GCNGC	8 cut(s)	100, 125, 367, 456, 1179, 1579, 1582, 1890
Bme1390I	CCNGG	2 cut(s)	233, 1808
Bme18I	GGWCC	2 cut(s)	268, 1930
BmeT110I	CYCGRG	3 cut(s)	484, 1986, 2039
BmgT120I	GGNCC	5 cut(s)	116, 268, 788, 1687, 1930
BmiI	GGNNCC	2 cut(s)	270, 1314
BmrFI	CCNGG	2 cut(s)	233, 1808
BmrI	ACTGGG	2 cut(s)	487, 1725
BmsI	GCATC	8 cut(s)	535, 736, 757, 1179, 1782, 2095, 2328, 2373
BmuI	ACTGGG	2 cut(s)	487, 1725
BoxI	GACNNNNGTC	1 cut(s)	134
BpiI	GAAGAC	1 cut(s)	1034
BpmI	CTGGAG	1 cut(s)	1080
Bpu10I	CCTNAGC	2 cut(s)	88, 1926
Bpu1102I	GCTNAGC	2 cut(s)	1065, 1238
Bpu14I	TTCGAA	1 cut(s)	55
BpuEI	CTTGAG	1 cut(s)	284
BpuMI	CCSGG	1 cut(s)	1808
BsaAI	YACGTR	1 cut(s)	1906
BsaI	GGTCTC	1 cut(s)	2307
BsaJI	CCNNGG	2 cut(s)	231, 594
Bsc4I	CCNNNNNNNGG	3 cut(s)	113, 277, 278
Bse118I	RCCGGY	2 cut(s)	113, 152
Bse1I	ACTGG	4 cut(s)	482, 1063, 1731, 1736
BseBI	CCWGG	1 cut(s)	233
BseDI	CCNNGG	2 cut(s)	231, 594
BseGI	GGATG	7 cut(s)	12, 33, 508, 772, 1555, 1701, 1797
BseLI	CCNNNNNNNGG	3 cut(s)	113, 277, 278
BseMII	CTCAG	6 cut(s)	102, 149, 698, 1079, 1470, 2430
BseNI	ACTGG	4 cut(s)	482, 1063, 1731, 1736
BseRI	GAGGAG	3 cut(s)	398, 431, 672
BseSI	GKGCMC	1 cut(s)	1143
BseXI	GCAGC	6 cut(s)	135, 441, 1164, 1589, 1592, 1875
BsgI	GTGCAG	1 cut(s)	1416
Bsh1236I	CGCG	1 cut(s)	1461
BshFI	GGCC	6 cut(s)	117, 156, 325, 790, 1350, 1688
BsiHKAI	GWGCWC	3 cut(s)	1066, 1987, 2223
BsiHKCI	CYCGRG	3 cut(s)	484, 1986, 2039
BsiSI	CCGG	3 cut(s)	114, 153, 1807
BslFI	GGGAC	3 cut(s)	488, 494, 1881
BslI	CCNNNNNNNGG	3 cut(s)	113, 277, 278
BsmAI	GTCTC	3 cut(s)	142, 1983, 2307
BsmFI	GGGAC	3 cut(s)	488, 494, 1881
BsmI	GAATGC	2 cut(s)	1728, 2457
BsnI	GGCC	6 cut(s)	117, 156, 325, 790, 1350, 1688
Bso31I	GGTCTC	1 cut(s)	2307
BsoBI	CYCGRG	3 cut(s)	484, 1986, 2039
Bsp119I	TTCGAA	1 cut(s)	55
Bsp1286I	GDGCHC	4 cut(s)	1066, 1143, 1987, 2223
Bsp143I	GATC	9 cut(s)	574, 1108, 1318, 1831, 1942, 1947, 2227, 2362, 2445
Bsp1720I	GCTNAGC	2 cut(s)	1065, 1238
BspACI	CCGC	4 cut(s)	99, 111, 365, 1180
BspANI	GGCC	6 cut(s)	117, 156, 325, 790, 1350, 1688
BspCNI	CTCAG	6 cut(s)	101, 150, 697, 1078, 1471, 2431
BspFNI	CGCG	1 cut(s)	1461
BspHI	TCATGA	1 cut(s)	2365
BspLI	GGNNCC	2 cut(s)	270, 1314
BspMAI	CTGCAG	2 cut(s)	1877, 1982
BspMI	ACCTGC	2 cut(s)	932, 1060
BspPI	GGATC	1 cut(s)	1826
BspQI	GCTCTTC	1 cut(s)	2228
BspT104I	TTCGAA	1 cut(s)	55
BspTI	CTTAAG	1 cut(s)	1172
BspTNI	GGTCTC	1 cut(s)	2307
BsrFI	RCCGGY	2 cut(s)	113, 152
BsrI	ACTGG	4 cut(s)	482, 1063, 1731, 1736
BssAI	RCCGGY	2 cut(s)	113, 152
BssECI	CCNNGG	2 cut(s)	231, 594
BssMI	GATC	9 cut(s)	574, 1108, 1318, 1831, 1942, 1947, 2227, 2362, 2445
Bst2UI	CCWGG	1 cut(s)	233
Bst6I	CTCTTC	4 cut(s)	70, 1179, 1403, 2228
BstAFI	CTTAAG	1 cut(s)	1172
BstAPI	GCANNNNNTGC	3 cut(s)	1439, 1723, 2189
BstBAI	YACGTR	1 cut(s)	1906
BstBI	TTCGAA	1 cut(s)	55
BstC8I	GCNNGC	4 cut(s)	115, 732, 736, 1358
BstDSI	CCRYGG	1 cut(s)	594
BstEII	GGTNACC	2 cut(s)	188, 2093
BstF5I	GGATG	7 cut(s)	12, 33, 508, 772, 1555, 1701, 1797
BstFNI	CGCG	1 cut(s)	1461
BstHHI	GCGC	1 cut(s)	1461
BstKTI	GATC	9 cut(s)	577, 1111, 1321, 1834, 1945, 1950, 2230, 2365, 2448
BstMAI	GTCTC	3 cut(s)	142, 1983, 2307
BstMBI	GATC	9 cut(s)	574, 1108, 1318, 1831, 1942, 1947, 2227, 2362, 2445
BstMWI	GCNNNNNNNGC	7 cut(s)	98, 123, 1439, 1723, 1801, 2189, 2210
BstNI	CCWGG	1 cut(s)	233
BstNSI	RCATGY	1 cut(s)	1332
BstPAI	GACNNNNGTC	1 cut(s)	134
BstPI	GGTNACC	2 cut(s)	188, 2093
BstSCI	CCNGG	2 cut(s)	231, 1806
BstSFI	CTRYAG	4 cut(s)	199, 1827, 1873, 1978
BstSLI	GKGCMC	1 cut(s)	1143
BstUI	CGCG	1 cut(s)	1461
BstV1I	GCAGC	6 cut(s)	135, 441, 1164, 1589, 1592, 1875
BstV2I	GAAGAC	1 cut(s)	1034
BstX2I	RGATCY	3 cut(s)	574, 1318, 1831
BstYI	RGATCY	3 cut(s)	574, 1318, 1831
BsuRI	GGCC	6 cut(s)	117, 156, 325, 790, 1350, 1688
BtgI	CCRYGG	1 cut(s)	594
BtsCI	GGATG	7 cut(s)	12, 33, 508, 772, 1555, 1701, 1797
BtsI	GCAGTG	2 cut(s)	1141, 2220
BtsIMutI	CAGTG	6 cut(s)	443, 679, 1014, 1141, 1675, 2220
BveI	ACCTGC	2 cut(s)	932, 1060
Cac8I	GCNNGC	4 cut(s)	115, 732, 736, 1358
CciI	TCATGA	1 cut(s)	2365
CfoI	GCGC	1 cut(s)	1461
Cfr10I	RCCGGY	2 cut(s)	113, 152
Cfr13I	GGNCC	5 cut(s)	116, 268, 788, 1687, 1930
Csp6I	GTAC	6 cut(s)	313, 432, 694, 904, 1232, 1402
CviQI	GTAC	6 cut(s)	313, 432, 694, 904, 1232, 1402
DpnI	GATC	9 cut(s)	576, 1110, 1320, 1833, 1944, 1949, 2229, 2364, 2447
DpnII	GATC	9 cut(s)	574, 1108, 1318, 1831, 1942, 1947, 2227, 2362, 2445
DraIII	CACNNNGTG	3 cut(s)	449, 1439, 2189
Eam1104I	CTCTTC	4 cut(s)	70, 1179, 1403, 2228
EarI	CTCTTC	4 cut(s)	70, 1179, 1403, 2228
Ecl136II	GAGCTC	3 cut(s)	1064, 1985, 2221
Eco24I	GRGCYC	3 cut(s)	1066, 1987, 2223
Eco31I	GGTCTC	1 cut(s)	2307
Eco32I	GATATC	2 cut(s)	640, 2355
Eco47I	GGWCC	2 cut(s)	268, 1930
Eco53kI	GAGCTC	3 cut(s)	1064, 1985, 2221
Eco57I	CTGAAG	2 cut(s)	777, 2334
Eco88I	CYCGRG	3 cut(s)	484, 1986, 2039
Eco91I	GGTNACC	2 cut(s)	188, 2093
EcoICRI	GAGCTC	3 cut(s)	1064, 1985, 2221
EcoO109I	RGGNCCY	2 cut(s)	268, 1930
EcoO65I	GGTNACC	2 cut(s)	188, 2093
EcoRII	CCWGG	1 cut(s)	231
EcoRV	GATATC	2 cut(s)	640, 2355
EcoT22I	ATGCAT	1 cut(s)	2034
EcoT38I	GRGCYC	3 cut(s)	1066, 1987, 2223
FalI	AAGNNNNNCTT	2 cut(s)	1176, 1208
FaqI	GGGAC	3 cut(s)	488, 494, 1881
FauI	CCCGC	1 cut(s)	1173
FbaI	TGATCA	3 cut(s)	1108, 2362, 2445
Fnu4HI	GCNGC	8 cut(s)	99, 124, 366, 455, 1178, 1578, 1581, 1889
FokI	GGATG	6 cut(s)	20, 515, 779, 1562, 1708, 1804
FriOI	GRGCYC	3 cut(s)	1066, 1987, 2223
Fsp4HI	GCNGC	8 cut(s)	99, 124, 366, 455, 1178, 1578, 1581, 1889
FspBI	CTAG	4 cut(s)	1505, 1626, 1679, 1934
GlaI	GCGC	1 cut(s)	1460
GluI	GCNGC	8 cut(s)	99, 124, 366, 455, 1178, 1578, 1581, 1889
GsuI	CTGGAG	1 cut(s)	1080
HaeIII	GGCC	6 cut(s)	117, 156, 325, 790, 1350, 1688
HapII	CCGG	3 cut(s)	114, 153, 1807
HhaI	GCGC	1 cut(s)	1461
Hin6I	GCGC	1 cut(s)	1459
HinP1I	GCGC	1 cut(s)	1459
HindIII	AAGCTT	2 cut(s)	957, 2001
HinfI	GANTC	8 cut(s)	162, 223, 275, 482, 899, 1750, 1869, 2411
HpaII	CCGG	3 cut(s)	114, 153, 1807
HphI	GGTGA	5 cut(s)	142, 200, 2105, 2392, 2420
Hpy166II	GTNNAC	6 cut(s)	696, 969, 1232, 1259, 1772, 1903
Hpy188I	TCNGA	8 cut(s)	142, 228, 687, 1080, 1480, 1947, 2232, 2347
Hpy8I	GTNNAC	6 cut(s)	696, 969, 1232, 1259, 1772, 1903
HpyAV	CCTTC	4 cut(s)	336, 416, 772, 801
HpyCH4IV	ACGT	2 cut(s)	602, 1905
HpyF10VI	GCNNNNNNNGC	7 cut(s)	98, 123, 1439, 1723, 1801, 2189, 2210
HpySE526I	ACGT	2 cut(s)	602, 1905
HspAI	GCGC	1 cut(s)	1459
KroI	GCCGGC	1 cut(s)	113
KroNI	GCCGGC	1 cut(s)	115
Ksp22I	TGATCA	3 cut(s)	1108, 2362, 2445
Kzo9I	GATC	9 cut(s)	574, 1108, 1318, 1831, 1942, 1947, 2227, 2362, 2445
LguI	GCTCTTC	1 cut(s)	2228
LmnI	GCTCC	3 cut(s)	1061, 1809, 2218
Lsp1109I	GCAGC	6 cut(s)	135, 441, 1164, 1589, 1592, 1875
LweI	GCATC	8 cut(s)	535, 736, 757, 1179, 1782, 2095, 2328, 2373
MaeI	CTAG	4 cut(s)	1505, 1626, 1679, 1934
MaeII	ACGT	2 cut(s)	602, 1905
MaeIII	GTNAC	9 cut(s)	188, 1009, 1114, 1633, 1738, 1763, 1843, 2053, 2093
MalI	GATC	9 cut(s)	576, 1110, 1320, 1833, 1944, 1949, 2229, 2364, 2447
MboI	GATC	9 cut(s)	574, 1108, 1318, 1831, 1942, 1947, 2227, 2362, 2445
MfeI	CAATTG	1 cut(s)	1208
MflI	RGATCY	3 cut(s)	574, 1318, 1831
MhlI	GDGCHC	4 cut(s)	1066, 1143, 1987, 2223
MlyI	GAGTC	3 cut(s)	476, 1744, 1863
MmeI	TCCRAC	1 cut(s)	1859
Mph1103I	ATGCAT	1 cut(s)	2034
MroNI	GCCGGC	1 cut(s)	113
MslI	CAYNNNNRTG	1 cut(s)	445
MspCI	CTTAAG	1 cut(s)	1172
MspI	CCGG	3 cut(s)	114, 153, 1807
MspR9I	CCNGG	2 cut(s)	233, 1808
MunI	CAATTG	1 cut(s)	1208
Mva1269I	GAATGC	2 cut(s)	1728, 2457
MvaI	CCWGG	1 cut(s)	233
MvnI	CGCG	1 cut(s)	1461
MwoI	GCNNNNNNNGC	7 cut(s)	98, 123, 1439, 1723, 1801, 2189, 2210
NaeI	GCCGGC	1 cut(s)	115
NciI	CCSGG	1 cut(s)	1808
NdeII	GATC	9 cut(s)	574, 1108, 1318, 1831, 1942, 1947, 2227, 2362, 2445
NgoMIV	GCCGGC	1 cut(s)	113
NlaIV	GGNNCC	2 cut(s)	270, 1314
NmuCI	GTSAC	4 cut(s)	188, 1009, 1633, 2093
NsiI	ATGCAT	1 cut(s)	2034
NspI	RCATGY	1 cut(s)	1332
NspV	TTCGAA	1 cut(s)	55
PaeR7I	CTCGAG	3 cut(s)	484, 1986, 2039
PagI	TCATGA	1 cut(s)	2365
PciI	ACATGT	1 cut(s)	1328
PciSI	GCTCTTC	1 cut(s)	2228
PctI	GAATGC	2 cut(s)	1728, 2457
PdiI	GCCGGC	1 cut(s)	115
PfeI	GAWTC	5 cut(s)	162, 223, 275, 899, 2411
PfoI	TCCNGGA	1 cut(s)	1806
PkrI	GCNGC	8 cut(s)	100, 125, 367, 456, 1179, 1579, 1582, 1890
PleI	GAGTC	3 cut(s)	476, 1744, 1863
PpsI	GAGTC	3 cut(s)	476, 1744, 1863
Ppu21I	YACGTR	1 cut(s)	1906
PpuMI	RGGWCCY	2 cut(s)	268, 1930
PscI	ACATGT	1 cut(s)	1328
PshAI	GACNNNNGTC	1 cut(s)	134
PshBI	ATTAAT	2 cut(s)	2174, 2283
PsiI	TTATAA	2 cut(s)	912, 1325
Psp124BI	GAGCTC	3 cut(s)	1066, 1987, 2223
Psp5II	RGGWCCY	2 cut(s)	268, 1930
Psp6I	CCWGG	1 cut(s)	231
PspEI	GGTNACC	2 cut(s)	188, 2093
PspGI	CCWGG	1 cut(s)	231
PspN4I	GGNNCC	2 cut(s)	270, 1314
PspPI	GGNCC	5 cut(s)	116, 268, 788, 1687, 1930
PspPPI	RGGWCCY	2 cut(s)	268, 1930
PspXI	VCTCGAGB	1 cut(s)	484
PstI	CTGCAG	2 cut(s)	1877, 1982
PsuI	RGATCY	3 cut(s)	574, 1318, 1831
RsaI	GTAC	6 cut(s)	314, 433, 695, 905, 1233, 1403
RsaNI	GTAC	6 cut(s)	313, 432, 694, 904, 1232, 1402
RseI	CAYNNNNRTG	1 cut(s)	445
SacI	GAGCTC	3 cut(s)	1066, 1987, 2223
SapI	GCTCTTC	1 cut(s)	2228
SatI	GCNGC	8 cut(s)	99, 124, 366, 455, 1178, 1578, 1581, 1889
Sau3AI	GATC	9 cut(s)	574, 1108, 1318, 1831, 1942, 1947, 2227, 2362, 2445
Sau96I	GGNCC	5 cut(s)	116, 268, 788, 1687, 1930
SchI	GAGTC	3 cut(s)	476, 1744, 1863
ScrFI	CCNGG	2 cut(s)	233, 1808
SduI	GDGCHC	4 cut(s)	1066, 1143, 1987, 2223
SfaNI	GCATC	8 cut(s)	535, 736, 757, 1179, 1782, 2095, 2328, 2373
SfcI	CTRYAG	4 cut(s)	199, 1827, 1873, 1978
Sfr274I	CTCGAG	3 cut(s)	484, 1986, 2039
SfuI	TTCGAA	1 cut(s)	55
SinI	GGWCC	2 cut(s)	268, 1930
SlaI	CTCGAG	3 cut(s)	484, 1986, 2039
SmiMI	CAYNNNNRTG	1 cut(s)	445
SmlI	CTYRAG	5 cut(s)	263, 484, 1172, 1986, 2039
SmoI	CTYRAG	5 cut(s)	263, 484, 1172, 1986, 2039
SpeI	ACTAGT	1 cut(s)	1678
SsiI	CCGC	4 cut(s)	99, 111, 365, 1180
SspI	AATATT	7 cut(s)	208, 916, 1021, 1159, 1540, 1573, 2324
SspMI	CTAG	4 cut(s)	1505, 1626, 1679, 1934
SstI	GAGCTC	3 cut(s)	1066, 1987, 2223
StyD4I	CCNGG	2 cut(s)	231, 1806
TaiI	ACGT	2 cut(s)	605, 1908
TatI	WGTACW	3 cut(s)	693, 1231, 1401
TauI	GCSGC	2 cut(s)	101, 368
TfiI	GAWTC	5 cut(s)	162, 223, 275, 899, 2411
TscAI	CASTG	6 cut(s)	450, 679, 1014, 1148, 1675, 2220
TseFI	GTSAC	4 cut(s)	188, 1009, 1633, 2093
TseI	GCWGC	6 cut(s)	123, 454, 1177, 1577, 1580, 1888
Tsp45I	GTSAC	4 cut(s)	188, 1009, 1633, 2093
TspGWI	ACGGA	2 cut(s)	650, 1708
TspRI	CASTG	6 cut(s)	450, 679, 1014, 1148, 1675, 2220
Vha464I	CTTAAG	1 cut(s)	1172
VpaK11BI	GGWCC	2 cut(s)	268, 1930
VspI	ATTAAT	2 cut(s)	2174, 2283
XapI	RAATTY	1 cut(s)	50
XceI	RCATGY	1 cut(s)	1332
XhoI	CTCGAG	3 cut(s)	484, 1986, 2039
XspI	CTAG	4 cut(s)	1505, 1626, 1679, 1934
Zsp2I	ATGCAT	1 cut(s)	2034

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.