Pentatricopeptide repeat-containing protein
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G13630 AT1G13630 AT1G13630 AT1G13630 AT1G13630 AT1G13630 |
| fragaria_vesca | FvH4_4g29120 |
| malus_domestica | MD13G1055600.v1.1 MD16G1054700.v1.1 |
| prunus_persica | Prupe.2G062100_v2.0.a1 Prupe.2G062200_v2.0.a1 Prupe.2G062300_v2.0.a1 Prupe.7G020200_v2.0.a1 Prupe.7G020300_v2.0.a1 |
| pyrus_communis | pycom16g04760 |
| rosa_chinensis | RchiOBHm_Chr4g0437181 |
| rosa_laevigata | RLG00000006457 |
| rosa_multiflora | Rmu_co8390257.1_g000001 Rmu_sc0000591.1_g000006 |
| rosa_roxburghii | Rroxscaffold_5G00378320 |
| rosa_rugosa | Rorug04G0298500.1 |
| rosa_samantha | Rh4AG353500 Rh4BG363300 Rh4CG377500 Rh4DG357300 |
| rosa_wichuraiana | Rw4G030970 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 409 |
| AcsI | RAATTY | 2 cut(s) | 27, 40 |
| AdeI | CACNNNGTG | 1 cut(s) | 365 |
| AfaI | GTAC | 1 cut(s) | 381 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 409 |
| AflIII | ACRYGT | 2 cut(s) | 57, 72 |
| AgsI | TTSAA | 4 cut(s) | 97, 178, 331, 478 |
| AjiI | CACGTC | 1 cut(s) | 58 |
| AluBI | AGCT | 4 cut(s) | 109, 164, 182, 458 |
| AluI | AGCT | 4 cut(s) | 109, 164, 182, 458 |
| Alw26I | GTCTC | 1 cut(s) | 162 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 458 |
| Ama87I | CYCGRG | 1 cut(s) | 165 |
| ApeKI | GCWGC | 1 cut(s) | 109 |
| ApoI | RAATTY | 2 cut(s) | 27, 40 |
| AsuHPI | GGTGA | 2 cut(s) | 386, 452 |
| AvaI | CYCGRG | 1 cut(s) | 165 |
| BanII | GRGCYC | 1 cut(s) | 399 |
| BbvI | GCAGC | 1 cut(s) | 96 |
| BccI | CCATC | 1 cut(s) | 411 |
| BceAI | ACGGC | 1 cut(s) | 3 |
| BciVI | GTATCC | 1 cut(s) | 112 |
| BclI | TGATCA | 2 cut(s) | 144, 351 |
| BcoDI | GTCTC | 1 cut(s) | 162 |
| BfaI | CTAG | 1 cut(s) | 465 |
| BfmI | CTRYAG | 1 cut(s) | 110 |
| BfuI | GTATCC | 1 cut(s) | 112 |
| BisI | GCNGC | 1 cut(s) | 110 |
| BlpI | GCTNAGC | 1 cut(s) | 459 |
| BlsI | GCNGC | 1 cut(s) | 111 |
| BmeT110I | CYCGRG | 1 cut(s) | 165 |
| BmgBI | CACGTC | 1 cut(s) | 58 |
| BmrI | ACTGGG | 1 cut(s) | 110 |
| BmsI | GCATC | 1 cut(s) | 274 |
| BmuI | ACTGGG | 1 cut(s) | 110 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 459 |
| BpuEI | CTTGAG | 1 cut(s) | 239 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 409 |
| Bse1I | ACTGG | 2 cut(s) | 105, 303 |
| BseGI | GGATG | 1 cut(s) | 289 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 409 |
| BseMII | CTCAG | 1 cut(s) | 450 |
| BseNI | ACTGG | 2 cut(s) | 105, 303 |
| BseXI | GCAGC | 1 cut(s) | 96 |
| BsiHKCI | CYCGRG | 1 cut(s) | 165 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 409 |
| BsmAI | GTCTC | 1 cut(s) | 162 |
| BsoBI | CYCGRG | 1 cut(s) | 165 |
| Bsp1286I | GDGCHC | 1 cut(s) | 399 |
| Bsp1407I | TGTACA | 1 cut(s) | 379 |
| Bsp143I | GATC | 4 cut(s) | 126, 144, 351, 442 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 459 |
| BspCNI | CTCAG | 1 cut(s) | 451 |
| BspHI | TCATGA | 1 cut(s) | 493 |
| BspMAI | CTGCAG | 1 cut(s) | 114 |
| BspQI | GCTCTTC | 1 cut(s) | 404 |
| BsrGI | TGTACA | 1 cut(s) | 379 |
| BsrI | ACTGG | 2 cut(s) | 105, 303 |
| BssMI | GATC | 4 cut(s) | 126, 144, 351, 442 |
| Bst6I | CTCTTC | 1 cut(s) | 404 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 365 |
| BstAUI | TGTACA | 1 cut(s) | 379 |
| BstDEI | CTNAG | 1 cut(s) | 459 |
| BstF5I | GGATG | 1 cut(s) | 289 |
| BstKTI | GATC | 4 cut(s) | 129, 147, 354, 445 |
| BstMAI | GTCTC | 1 cut(s) | 162 |
| BstMBI | GATC | 4 cut(s) | 126, 144, 351, 442 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 365 |
| BstSFI | CTRYAG | 1 cut(s) | 110 |
| BstV1I | GCAGC | 1 cut(s) | 96 |
| BsuI | GTATCC | 1 cut(s) | 112 |
| BtrI | CACGTC | 1 cut(s) | 58 |
| BtsCI | GGATG | 1 cut(s) | 289 |
| BtsI | GCAGTG | 1 cut(s) | 396 |
| BtsIMutI | CAGTG | 1 cut(s) | 396 |
| CaiI | CAGNNNCTG | 1 cut(s) | 458 |
| CciI | TCATGA | 1 cut(s) | 493 |
| Csp6I | GTAC | 1 cut(s) | 380 |
| CviAII | CATG | 1 cut(s) | 494 |
| CviJI | RGCY | 9 cut(s) | 109, 164, 182, 223, 295, 397, 458, 463, 486 |
| CviKI_1 | RGCY | 9 cut(s) | 109, 164, 182, 223, 295, 397, 458, 463, 486 |
| CviQI | GTAC | 1 cut(s) | 380 |
| DdeI | CTNAG | 1 cut(s) | 459 |
| DpnI | GATC | 4 cut(s) | 128, 146, 353, 444 |
| DpnII | GATC | 4 cut(s) | 126, 144, 351, 442 |
| DraIII | CACNNNGTG | 1 cut(s) | 365 |
| Eam1104I | CTCTTC | 1 cut(s) | 404 |
| EarI | CTCTTC | 1 cut(s) | 404 |
| Eco24I | GRGCYC | 1 cut(s) | 399 |
| Eco88I | CYCGRG | 1 cut(s) | 165 |
| EcoT38I | GRGCYC | 1 cut(s) | 399 |
| FaeI | CATG | 1 cut(s) | 497 |
| FatI | CATG | 1 cut(s) | 493 |
| FbaI | TGATCA | 2 cut(s) | 144, 351 |
| Fnu4HI | GCNGC | 1 cut(s) | 110 |
| FokI | GGATG | 1 cut(s) | 296 |
| FriOI | GRGCYC | 1 cut(s) | 399 |
| Fsp4HI | GCNGC | 1 cut(s) | 110 |
| FspBI | CTAG | 1 cut(s) | 465 |
| GluI | GCNGC | 1 cut(s) | 110 |
| Hin1II | CATG | 1 cut(s) | 497 |
| HindIII | AAGCTT | 1 cut(s) | 180 |
| HphI | GGTGA | 2 cut(s) | 386, 452 |
| Hpy188I | TCNGA | 1 cut(s) | 144 |
| Hpy188III | TCNNGA | 4 cut(s) | 167, 175, 218, 494 |
| Hpy99I | CGWCG | 1 cut(s) | 435 |
| HpyCH4IV | ACGT | 2 cut(s) | 57, 74 |
| HpyCH4V | TGCA | 5 cut(s) | 112, 159, 193, 318, 368 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 365 |
| HpyF3I | CTNAG | 1 cut(s) | 459 |
| HpySE526I | ACGT | 2 cut(s) | 57, 74 |
| Hsp92II | CATG | 1 cut(s) | 497 |
| Ksp22I | TGATCA | 2 cut(s) | 144, 351 |
| Kzo9I | GATC | 4 cut(s) | 126, 144, 351, 442 |
| LguI | GCTCTTC | 1 cut(s) | 404 |
| LpnPI | CCDG | 6 cut(s) | 86, 98, 137, 243, 277, 284 |
| Lsp1109I | GCAGC | 1 cut(s) | 96 |
| LweI | GCATC | 1 cut(s) | 274 |
| MaeI | CTAG | 1 cut(s) | 465 |
| MaeII | ACGT | 2 cut(s) | 57, 74 |
| MaeIII | GTNAC | 1 cut(s) | 232 |
| MalI | GATC | 4 cut(s) | 128, 146, 353, 444 |
| MboI | GATC | 4 cut(s) | 126, 144, 351, 442 |
| MboII | GAAGA | 2 cut(s) | 391, 482 |
| MhlI | GDGCHC | 1 cut(s) | 399 |
| MluCI | AATT | 5 cut(s) | 27, 40, 81, 325, 448 |
| MnlI | CCTC | 2 cut(s) | 28, 109 |
| MseI | TTAA | 1 cut(s) | 84 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 365 |
| NdeII | GATC | 4 cut(s) | 126, 144, 351, 442 |
| NlaIII | CATG | 1 cut(s) | 497 |
| PaeR7I | CTCGAG | 1 cut(s) | 165 |
| PagI | TCATGA | 1 cut(s) | 493 |
| PciSI | GCTCTTC | 1 cut(s) | 404 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 409 |
| PkrI | GCNGC | 1 cut(s) | 111 |
| PstI | CTGCAG | 1 cut(s) | 114 |
| PstNI | CAGNNNCTG | 1 cut(s) | 458 |
| RsaI | GTAC | 1 cut(s) | 381 |
| RsaNI | GTAC | 1 cut(s) | 380 |
| SapI | GCTCTTC | 1 cut(s) | 404 |
| SaqAI | TTAA | 1 cut(s) | 84 |
| SatI | GCNGC | 1 cut(s) | 110 |
| Sau3AI | GATC | 4 cut(s) | 126, 144, 351, 442 |
| SduI | GDGCHC | 1 cut(s) | 399 |
| SetI | ASST | 8 cut(s) | 39, 60, 77, 111, 166, 184, 279, 460 |
| SfaNI | GCATC | 1 cut(s) | 274 |
| SfcI | CTRYAG | 1 cut(s) | 110 |
| Sfr274I | CTCGAG | 1 cut(s) | 165 |
| SlaI | CTCGAG | 1 cut(s) | 165 |
| SmlI | CTYRAG | 2 cut(s) | 165, 218 |
| SmoI | CTYRAG | 2 cut(s) | 165, 218 |
| Sse9I | AATT | 5 cut(s) | 27, 40, 81, 325, 448 |
| SspI | AATATT | 1 cut(s) | 139 |
| SspMI | CTAG | 1 cut(s) | 465 |
| TaiI | ACGT | 2 cut(s) | 60, 77 |
| TaqI | TCGA | 1 cut(s) | 166 |
| TasI | AATT | 5 cut(s) | 27, 40, 81, 325, 448 |
| TatI | WGTACW | 1 cut(s) | 379 |
| Tru1I | TTAA | 1 cut(s) | 84 |
| Tru9I | TTAA | 1 cut(s) | 84 |
| TscAI | CASTG | 1 cut(s) | 396 |
| TseI | GCWGC | 1 cut(s) | 109 |
| TspDTI | ATGAA | 2 cut(s) | 200, 482 |
| TspRI | CASTG | 1 cut(s) | 396 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 409 |
| XapI | RAATTY | 2 cut(s) | 27, 40 |
| XhoI | CTCGAG | 1 cut(s) | 165 |
| XspI | CTAG | 1 cut(s) | 465 |