Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8390257.1

Orthogroup ID

OG0006693

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 1121

Gene Structure 1120 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8390257.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 958 bp

atgctcaatcacatccacaaatggaagaagcccatccattttcttcaaaaatctcgaaccctctcttccctcatcttcactaaatcctcagcctttgccgcaaagcccaccgccggcccacgcagcacaaccaatgtctccgaactcatcaccggcctgagaatcttgggtttgggtcgaattaacggtgaccattactataggtatattatttcgactttgaatcaggcccaggtggatattattatcgaaaggttgagccttgaggaccctgaatcgggtttcggtttcttcaatttgttgaggaatgagtacggttttcggccttcaagggtttcgagtttcgcagtttctcatgttttagcggcgaaaaggtggtttgaggagttgcgtttggttatgaagaaaatggtggaggaggaaggttctggttctgcaacatcactttgtgagctgctattgagtagatttagggactgggactcgagtggtgtagtgtgggatgttttggcgttttcttattcgagaagtgagatggtttatgatgccctgactgttcttgctaagatgaaagatctggatttgaaagtttccacggcaacgtataattgcttgttgcataatttaaggcacacggatatcatgtggaatgtgtatgatgaaattaaggacagtggaactcctcagagtgagtacactacttctatacttatagatggactgtgtgagcaagccagcatacgagatgcagttttgtttctcttggatgctcaaaggaaggagaatgggccttcagttgttccgttcaataccattatgtcgaggttctgtaaattgggttttgtggatattgccaagtcgtttttttgtatgatattcaagtatggactacttcctgattcgtacagttataatattcttattcatgggctgtgtgtagcaggttctttggaagaag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

319

Amino Acids

36.16

Weight (kDa)

7.08

Isoelectric Point (pI)

49.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006693)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13630 AT1G13630 AT1G13630 AT1G13630 AT1G13630 AT1G13630
fragaria_vesca	FvH4_4g29120
malus_domestica	MD13G1055600.v1.1 MD16G1054700.v1.1
prunus_persica	Prupe.2G062100_v2.0.a1 Prupe.2G062200_v2.0.a1 Prupe.2G062300_v2.0.a1 Prupe.7G020200_v2.0.a1 Prupe.7G020300_v2.0.a1
pyrus_communis	pycom16g04760
rosa_chinensis	RchiOBHm_Chr4g0437181
rosa_laevigata	RLG00000006457
rosa_multiflora	Rmu_co8390257.1_g000001 Rmu_sc0000591.1_g000006
rosa_roxburghii	Rroxscaffold_5G00378320
rosa_rugosa	Rorug04G0298500.1
rosa_samantha	Rh4AG353500 Rh4BG363300 Rh4CG377500 Rh4DG357300
rosa_wichuraiana	Rw4G030970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	912
Acc36I	ACCTGC	1 cut(s)	932
AciI	CCGC	3 cut(s)	99, 111, 365
AcuI	CTGAAG	1 cut(s)	777
AdeI	CACNNNGTG	1 cut(s)	449
AfaI	GTAC	3 cut(s)	314, 695, 905
AfiI	CCNNNNNNNGG	3 cut(s)	113, 277, 278
AgsI	TTSAA	7 cut(s)	47, 223, 295, 330, 586, 808, 880
AjnI	CCWGG	1 cut(s)	231
AluBI	AGCT	1 cut(s)	454
AluI	AGCT	1 cut(s)	454
Alw26I	GTCTC	1 cut(s)	142
Ama87I	CYCGRG	1 cut(s)	484
AoxI	GGCC	5 cut(s)	115, 154, 228, 323, 788
ApeKI	GCWGC	2 cut(s)	123, 454
AspS9I	GGNCC	4 cut(s)	116, 229, 268, 788
AsuHPI	GGTGA	2 cut(s)	142, 200
AvaI	CYCGRG	1 cut(s)	484
AvaII	GGWCC	1 cut(s)	268
BbvCI	CCTCAGC	1 cut(s)	88
BbvI	GCAGC	2 cut(s)	135, 441
BccI	CCATC	3 cut(s)	41, 529, 710
BceAI	ACGGC	1 cut(s)	612
BciT130I	CCWGG	1 cut(s)	233
BcoDI	GTCTC	1 cut(s)	142
BfmI	CTRYAG	1 cut(s)	199
BfuAI	ACCTGC	1 cut(s)	932
BglII	AGATCT	1 cut(s)	574
BisI	GCNGC	4 cut(s)	99, 124, 366, 455
BlsI	GCNGC	4 cut(s)	100, 125, 367, 456
Bme1390I	CCNGG	1 cut(s)	233
Bme18I	GGWCC	1 cut(s)	268
BmeT110I	CYCGRG	1 cut(s)	484
BmgT120I	GGNCC	4 cut(s)	116, 229, 268, 788
BmiI	GGNNCC	1 cut(s)	270
BmrFI	CCNGG	1 cut(s)	233
BmrI	ACTGGG	1 cut(s)	487
BmsI	GCATC	3 cut(s)	535, 736, 757
BmuI	ACTGGG	1 cut(s)	487
Bpu10I	CCTNAGC	1 cut(s)	88
BpuEI	CTTGAG	1 cut(s)	284
BsaJI	CCNNGG	2 cut(s)	231, 594
Bsc4I	CCNNNNNNNGG	3 cut(s)	113, 277, 278
Bse118I	RCCGGY	2 cut(s)	113, 152
Bse1I	ACTGG	1 cut(s)	482
BseBI	CCWGG	1 cut(s)	233
BseDI	CCNNGG	2 cut(s)	231, 594
BseGI	GGATG	4 cut(s)	12, 33, 508, 772
BseLI	CCNNNNNNNGG	3 cut(s)	113, 277, 278
BseMII	CTCAG	3 cut(s)	102, 149, 698
BseNI	ACTGG	1 cut(s)	482
BseRI	GAGGAG	3 cut(s)	398, 431, 672
BseXI	GCAGC	2 cut(s)	135, 441
BshFI	GGCC	5 cut(s)	117, 156, 230, 325, 790
BsiHKCI	CYCGRG	1 cut(s)	484
BsiSI	CCGG	2 cut(s)	114, 153
BslFI	GGGAC	2 cut(s)	488, 494
BslI	CCNNNNNNNGG	3 cut(s)	113, 277, 278
BsmAI	GTCTC	1 cut(s)	142
BsmFI	GGGAC	2 cut(s)	488, 494
BsnI	GGCC	5 cut(s)	117, 156, 230, 325, 790
BsoBI	CYCGRG	1 cut(s)	484
Bsp143I	GATC	1 cut(s)	574
BspACI	CCGC	3 cut(s)	99, 111, 365
BspANI	GGCC	5 cut(s)	117, 156, 230, 325, 790
BspCNI	CTCAG	3 cut(s)	101, 150, 697
BspLI	GGNNCC	1 cut(s)	270
BspMI	ACCTGC	1 cut(s)	932
BsrFI	RCCGGY	2 cut(s)	113, 152
BsrI	ACTGG	1 cut(s)	482
BssAI	RCCGGY	2 cut(s)	113, 152
BssECI	CCNNGG	2 cut(s)	231, 594
BssMI	GATC	1 cut(s)	574
Bst2UI	CCWGG	1 cut(s)	233
Bst4CI	ACNGT	6 cut(s)	188, 317, 556, 674, 723, 908
Bst6I	CTCTTC	1 cut(s)	70
BstC8I	GCNNGC	3 cut(s)	115, 732, 736
BstDEI	CTNAG	4 cut(s)	88, 158, 564, 684
BstDSI	CCRYGG	1 cut(s)	594
BstEII	GGTNACC	1 cut(s)	188
BstF5I	GGATG	4 cut(s)	12, 33, 508, 772
BstKTI	GATC	1 cut(s)	577
BstMAI	GTCTC	1 cut(s)	142
BstMBI	GATC	1 cut(s)	574
BstMWI	GCNNNNNNNGC	2 cut(s)	98, 123
BstNI	CCWGG	1 cut(s)	233
BstPI	GGTNACC	1 cut(s)	188
BstSCI	CCNGG	1 cut(s)	231
BstSFI	CTRYAG	1 cut(s)	199
BstV1I	GCAGC	2 cut(s)	135, 441
BstX2I	RGATCY	1 cut(s)	574
BstYI	RGATCY	1 cut(s)	574
BsuRI	GGCC	5 cut(s)	117, 156, 230, 325, 790
BtgI	CCRYGG	1 cut(s)	594
BtsCI	GGATG	4 cut(s)	12, 33, 508, 772
BtsIMutI	CAGTG	1 cut(s)	679
BveI	ACCTGC	1 cut(s)	932
Cac8I	GCNNGC	3 cut(s)	115, 732, 736
Cfr10I	RCCGGY	2 cut(s)	113, 152
Cfr13I	GGNCC	4 cut(s)	116, 229, 268, 788
Csp6I	GTAC	3 cut(s)	313, 694, 904
CviAII	CATG	3 cut(s)	356, 643, 926
CviQI	GTAC	3 cut(s)	313, 694, 904
DdeI	CTNAG	4 cut(s)	88, 158, 564, 684
DpnI	GATC	1 cut(s)	576
DpnII	GATC	1 cut(s)	574
DraIII	CACNNNGTG	1 cut(s)	449
Eam1104I	CTCTTC	1 cut(s)	70
EarI	CTCTTC	1 cut(s)	70
Eco32I	GATATC	1 cut(s)	640
Eco47I	GGWCC	1 cut(s)	268
Eco57I	CTGAAG	1 cut(s)	777
Eco88I	CYCGRG	1 cut(s)	484
Eco91I	GGTNACC	1 cut(s)	188
EcoO109I	RGGNCCY	1 cut(s)	268
EcoO65I	GGTNACC	1 cut(s)	188
EcoRII	CCWGG	1 cut(s)	231
EcoRV	GATATC	1 cut(s)	640
FaeI	CATG	3 cut(s)	359, 646, 929
FaqI	GGGAC	2 cut(s)	488, 494
FatI	CATG	3 cut(s)	355, 642, 925
Fnu4HI	GCNGC	4 cut(s)	99, 124, 366, 455
FokI	GGATG	3 cut(s)	20, 515, 779
Fsp4HI	GCNGC	4 cut(s)	99, 124, 366, 455
GluI	GCNGC	4 cut(s)	99, 124, 366, 455
HaeIII	GGCC	5 cut(s)	117, 156, 230, 325, 790
HapII	CCGG	2 cut(s)	114, 153
Hin1II	CATG	3 cut(s)	359, 646, 929
HinfI	GANTC	5 cut(s)	162, 223, 275, 482, 899
HpaII	CCGG	2 cut(s)	114, 153
HphI	GGTGA	2 cut(s)	142, 200
Hpy166II	GTNNAC	1 cut(s)	696
Hpy188I	TCNGA	2 cut(s)	142, 687
Hpy188III	TCNNGA	4 cut(s)	54, 525, 578, 896
Hpy8I	GTNNAC	1 cut(s)	696
HpyAV	CCTTC	4 cut(s)	336, 416, 772, 801
HpyCH4III	ACNGT	6 cut(s)	188, 317, 556, 674, 723, 908
HpyCH4IV	ACGT	1 cut(s)	602
HpyCH4V	TGCA	3 cut(s)	437, 619, 749
HpyF10VI	GCNNNNNNNGC	2 cut(s)	98, 123
HpyF3I	CTNAG	4 cut(s)	88, 158, 564, 684
HpySE526I	ACGT	1 cut(s)	602
Hsp92II	CATG	3 cut(s)	359, 646, 929
KroI	GCCGGC	1 cut(s)	113
KroNI	GCCGGC	1 cut(s)	115
Kzo9I	GATC	1 cut(s)	574
Lsp1109I	GCAGC	2 cut(s)	135, 441
LweI	GCATC	3 cut(s)	535, 736, 757
MaeII	ACGT	1 cut(s)	602
MaeIII	GTNAC	1 cut(s)	188
MalI	GATC	1 cut(s)	576
MboI	GATC	1 cut(s)	574
MboII	GAAGA	6 cut(s)	35, 37, 57, 67, 283, 415
MflI	RGATCY	1 cut(s)	574
MluCI	AATT	6 cut(s)	180, 295, 607, 622, 663, 833
MlyI	GAGTC	1 cut(s)	476
MroNI	GCCGGC	1 cut(s)	113
MseI	TTAA	3 cut(s)	183, 626, 666
MspI	CCGG	2 cut(s)	114, 153
MspR9I	CCNGG	1 cut(s)	233
MvaI	CCWGG	1 cut(s)	233
MwoI	GCNNNNNNNGC	2 cut(s)	98, 123
NaeI	GCCGGC	1 cut(s)	115
NdeII	GATC	1 cut(s)	574
NgoMIV	GCCGGC	1 cut(s)	113
NlaIII	CATG	3 cut(s)	359, 646, 929
NlaIV	GGNNCC	1 cut(s)	270
NmuCI	GTSAC	1 cut(s)	188
PaeR7I	CTCGAG	1 cut(s)	484
PdiI	GCCGGC	1 cut(s)	115
PfeI	GAWTC	4 cut(s)	162, 223, 275, 899
PkrI	GCNGC	4 cut(s)	100, 125, 367, 456
PleI	GAGTC	1 cut(s)	476
PpsI	GAGTC	1 cut(s)	476
PpuMI	RGGWCCY	1 cut(s)	268
PsiI	TTATAA	1 cut(s)	912
Psp5II	RGGWCCY	1 cut(s)	268
Psp6I	CCWGG	1 cut(s)	231
PspEI	GGTNACC	1 cut(s)	188
PspGI	CCWGG	1 cut(s)	231
PspN4I	GGNNCC	1 cut(s)	270
PspPI	GGNCC	4 cut(s)	116, 229, 268, 788
PspPPI	RGGWCCY	1 cut(s)	268
PspXI	VCTCGAGB	1 cut(s)	484
PsuI	RGATCY	1 cut(s)	574
RsaI	GTAC	3 cut(s)	314, 695, 905
RsaNI	GTAC	3 cut(s)	313, 694, 904
SaqAI	TTAA	3 cut(s)	183, 626, 666
SatI	GCNGC	4 cut(s)	99, 124, 366, 455
Sau3AI	GATC	1 cut(s)	574
Sau96I	GGNCC	4 cut(s)	116, 229, 268, 788
SchI	GAGTC	1 cut(s)	476
ScrFI	CCNGG	1 cut(s)	233
SetI	ASST	9 cut(s)	206, 237, 257, 377, 427, 456, 605, 827, 946
SfaNI	GCATC	3 cut(s)	535, 736, 757
SfcI	CTRYAG	1 cut(s)	199
Sfr274I	CTCGAG	1 cut(s)	484
SinI	GGWCC	1 cut(s)	268
SlaI	CTCGAG	1 cut(s)	484
SmlI	CTYRAG	2 cut(s)	263, 484
SmoI	CTYRAG	2 cut(s)	263, 484
Sse9I	AATT	6 cut(s)	180, 295, 607, 622, 663, 833
SsiI	CCGC	3 cut(s)	99, 111, 365
SspI	AATATT	1 cut(s)	916
StyD4I	CCNGG	1 cut(s)	231
TaaI	ACNGT	6 cut(s)	188, 317, 556, 674, 723, 908
TaiI	ACGT	1 cut(s)	605
TaqI	TCGA	8 cut(s)	55, 178, 215, 249, 338, 485, 524, 821
TasI	AATT	6 cut(s)	180, 295, 607, 622, 663, 833
TatI	WGTACW	1 cut(s)	693
TauI	GCSGC	2 cut(s)	101, 368
TfiI	GAWTC	4 cut(s)	162, 223, 275, 899
Tru1I	TTAA	3 cut(s)	183, 626, 666
Tru9I	TTAA	3 cut(s)	183, 626, 666
TscAI	CASTG	1 cut(s)	679
TseFI	GTSAC	1 cut(s)	188
TseI	GCWGC	2 cut(s)	123, 454
Tsp45I	GTSAC	1 cut(s)	188
TspDTI	ATGAA	4 cut(s)	416, 584, 675, 914
TspGWI	ACGGA	2 cut(s)	650, 792
TspRI	CASTG	1 cut(s)	679
VpaK11BI	GGWCC	1 cut(s)	268
XhoI	CTCGAG	1 cut(s)	484

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.