Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0008468

Physical Location & Seq

Genomic Coordinates Forward (+)

14883026 .. 14887752

Gene Structure 4727 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G094500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 729 bp

ATGGCACTGAGCTCGTTCTCTATAAAATTTGGTTCCATTTCGTGTCCGTACGAAAATCTGAGGAACGGGACGTCTCCGAGACTGAAACTCAAACATGTGCTTTTCGCTTTCGCTCCCCCGAAACCCTCGCTTCATATTTCGGCCGATTTGACACCGAAAGCGCGCTTCGTCGCTCGGCGAACCGAATCGGTATCGGTTCCGCAGCTCCAGCGGCCTCTAAGTGAGTATATGAGCTTACCGGCGAGTCAATACTCGGTTTTAGATGCAGAGAGGATCGAGAGAGTTGATGAGAATACATTCAGGTGCTATGTGTATAGGTTCAAGTTCTTTGCATTTGAGGTTTGCCCTGTTCTTCTGGTTAGGGTCGAAGAGCAGCCCAATGGCTGTTGCATTAAGCTCTTGTCCTGCAAGCTTGATGGCTCACCCATCGCGGTTGCGCAGAACGACAAGTTTGATGCTTTTATGGTGAATCAAATATCATGCACTAACAACCAAAGCAACTCCTCACTACAGCAACTCAGATCAGATACTGTCATTGAGGTGAGCATTGAGATTCCTTTTGCATTTCGTGCAATCCCAGCACAAGCTATTGAATCATCCGGGACCCAAGTCCTTGAACAAATATTAAGAATTATGCTTCCCAGGTTTATGTCGCAGCTTGTGAGAGATTATCGAGCATGGGCTTCTGGTGATAGATCAAGGCAGCCTCTTGGCACTGGTGAGATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1997

Protein Analysis

243

Amino Acids

27.26

Weight (kDa)

8.87

Isoelectric Point (pI)

61.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008468)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G04440 AT5G04440
fragaria_vesca	FvH4_7g06650 FvH4_7g06650 FvH4_7g06650 FvH4_7g06650 FvH4_7g06650 FvH4_7g06650
malus_domestica	MD07G1074500.v1.1
prunus_persica	Prupe.2G094500_v2.0.a1
pyrus_communis	pycom07g05850
rosa_chinensis	RchiOBHm_Chr1g0336111
rosa_laevigata	RLG00000029378
rosa_multiflora	Rmu_sc0001258.1_g000002 Rmu_sc0040159.1_g000001
rosa_roxburghii	Rroxscaffold_4G00315870
rosa_rugosa	Rorug01G0123000 Rorug01G0123100
rosa_samantha	Rh1AG143700 Rh1BG113300 Rh1CG135400 Rh1DG150100
rosa_wichuraiana	Rw0G015180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	74
Acc16I	TGCGCA	1 cut(s)	438
AccII	CGCG	2 cut(s)	163, 431
AciI	CCGC	3 cut(s)	200, 211, 431
AclWI	GGATC	1 cut(s)	281
AcoI	YGGCCR	1 cut(s)	141
AcsI	RAATTY	1 cut(s)	26
AcyI	GRCGYC	1 cut(s)	71
AfaI	GTAC	1 cut(s)	50
AflIII	ACRYGT	1 cut(s)	94
AgsI	TTSAA	3 cut(s)	322, 593, 617
AjnI	CCWGG	1 cut(s)	641
AluBI	AGCT	7 cut(s)	12, 205, 234, 397, 412, 587, 658
AluI	AGCT	7 cut(s)	12, 205, 234, 397, 412, 587, 658
Alw21I	GWGCWC	1 cut(s)	14
Alw26I	GTCTC	2 cut(s)	73, 78
AlwI	GGATC	1 cut(s)	281
AlwNI	CAGNNNCTG	1 cut(s)	530
AoxI	GGCC	2 cut(s)	141, 212
ApeKI	GCWGC	4 cut(s)	202, 373, 655, 703
ApoI	RAATTY	1 cut(s)	26
Asp700I	GAANNNNTTC	1 cut(s)	296
AspLEI	GCGC	3 cut(s)	163, 165, 439
AspS9I	GGNCC	1 cut(s)	603
AsuC2I	CCSGG	1 cut(s)	601
AsuHPI	GGTGA	4 cut(s)	414, 478, 553, 701
AvaII	GGWCC	1 cut(s)	603
BanII	GRGCYC	1 cut(s)	14
Bbv12I	GWGCWC	1 cut(s)	14
BbvI	GCAGC	4 cut(s)	214, 385, 667, 715
BccI	CCATC	2 cut(s)	410, 434
BcgI	CGANNNNNNTGC	1 cut(s)	28
BciT130I	CCWGG	1 cut(s)	643
BcnI	CCSGG	1 cut(s)	601
BcoDI	GTCTC	2 cut(s)	73, 78
BfmI	CTRYAG	1 cut(s)	509
BisI	GCNGC	5 cut(s)	203, 212, 374, 656, 704
BlsI	GCNGC	5 cut(s)	204, 213, 375, 657, 705
Bme1390I	CCNGG	2 cut(s)	601, 643
Bme18I	GGWCC	1 cut(s)	603
BmgT120I	GGNCC	1 cut(s)	603
BmiI	GGNNCC	4 cut(s)	34, 198, 604, 605
BmrFI	CCNGG	2 cut(s)	601, 643
BmsI	GCATC	2 cut(s)	253, 445
BoxI	GACNNNNGTC	1 cut(s)	608
BpmI	CTGGAG	1 cut(s)	191
BpuMI	CCSGG	1 cut(s)	601
BsaHI	GRCGYC	1 cut(s)	71
BsaJI	CCNNGG	1 cut(s)	641
Bse118I	RCCGGY	1 cut(s)	238
Bse1I	ACTGG	1 cut(s)	721
BseBI	CCWGG	1 cut(s)	643
BseDI	CCNNGG	1 cut(s)	641
BseGI	GGATG	1 cut(s)	596
BseMII	CTCAG	2 cut(s)	50, 532
BseNI	ACTGG	1 cut(s)	721
BsePI	GCGCGC	1 cut(s)	161
BseRI	GAGGAG	1 cut(s)	493
BseX3I	CGGCCG	1 cut(s)	141
BseXI	GCAGC	4 cut(s)	214, 385, 667, 715
BseYI	CCCAGC	1 cut(s)	577
Bsh1236I	CGCG	2 cut(s)	163, 431
Bsh1285I	CGRYCG	1 cut(s)	144
BshFI	GGCC	2 cut(s)	143, 214
BsiEI	CGRYCG	1 cut(s)	144
BsiHKAI	GWGCWC	1 cut(s)	14
BsiSI	CCGG	2 cut(s)	239, 600
BsiWI	CGTACG	1 cut(s)	48
BslFI	GGGAC	2 cut(s)	82, 616
BsmAI	GTCTC	2 cut(s)	73, 78
BsmBI	CGTCTC	1 cut(s)	78
BsmFI	GGGAC	2 cut(s)	82, 616
BsnI	GGCC	2 cut(s)	143, 214
Bsp1286I	GDGCHC	1 cut(s)	14
Bsp143I	GATC	3 cut(s)	273, 521, 695
BspACI	CCGC	3 cut(s)	200, 211, 431
BspANI	GGCC	2 cut(s)	143, 214
BspCNI	CTCAG	2 cut(s)	51, 531
BspFNI	CGCG	2 cut(s)	163, 431
BspLI	GGNNCC	4 cut(s)	34, 198, 604, 605
BspPI	GGATC	1 cut(s)	281
BspQI	GCTCTTC	1 cut(s)	363
BsrFI	RCCGGY	1 cut(s)	238
BsrI	ACTGG	1 cut(s)	721
BssAI	RCCGGY	1 cut(s)	238
BssECI	CCNNGG	1 cut(s)	641
BssHII	GCGCGC	1 cut(s)	161
BssMI	GATC	3 cut(s)	273, 521, 695
BssNI	GRCGYC	1 cut(s)	71
Bst2UI	CCWGG	1 cut(s)	643
Bst4CI	ACNGT	1 cut(s)	532
Bst6I	CTCTTC	1 cut(s)	363
BstACI	GRCGYC	1 cut(s)	71
BstAPI	GCANNNNNTGC	1 cut(s)	569
BstC8I	GCNNGC	2 cut(s)	163, 410
BstDEI	CTNAG	4 cut(s)	8, 59, 218, 518
BstF5I	GGATG	1 cut(s)	596
BstFNI	CGCG	2 cut(s)	163, 431
BstHHI	GCGC	3 cut(s)	163, 165, 439
BstKTI	GATC	3 cut(s)	276, 524, 698
BstMAI	GTCTC	2 cut(s)	73, 78
BstMBI	GATC	3 cut(s)	273, 521, 695
BstMCI	CGRYCG	1 cut(s)	144
BstMWI	GCNNNNNNNGC	4 cut(s)	208, 211, 569, 578
BstNI	CCWGG	1 cut(s)	643
BstNSI	RCATGY	1 cut(s)	98
BstPAI	GACNNNNGTC	1 cut(s)	608
BstSCI	CCNGG	2 cut(s)	599, 641
BstSFI	CTRYAG	1 cut(s)	509
BstUI	CGCG	2 cut(s)	163, 431
BstV1I	GCAGC	4 cut(s)	214, 385, 667, 715
BstZI	CGGCCG	1 cut(s)	141
BsuRI	GGCC	2 cut(s)	143, 214
BtgZI	GCGATG	1 cut(s)	412
BtsCI	GGATG	1 cut(s)	596
BtsIMutI	CAGTG	2 cut(s)	5, 714
Cac8I	GCNNGC	2 cut(s)	163, 410
CaiI	CAGNNNCTG	1 cut(s)	530
CfoI	GCGC	3 cut(s)	163, 165, 439
Cfr10I	RCCGGY	1 cut(s)	238
Cfr13I	GGNCC	1 cut(s)	603
Csp6I	GTAC	1 cut(s)	49
CviAII	CATG	3 cut(s)	95, 480, 678
CviQI	GTAC	1 cut(s)	49
DdeI	CTNAG	4 cut(s)	8, 59, 218, 518
DpnI	GATC	3 cut(s)	275, 523, 697
DpnII	GATC	3 cut(s)	273, 521, 695
EaeI	YGGCCR	1 cut(s)	141
EagI	CGGCCG	1 cut(s)	141
Eam1104I	CTCTTC	1 cut(s)	363
EarI	CTCTTC	1 cut(s)	363
Ecl136II	GAGCTC	1 cut(s)	12
EclXI	CGGCCG	1 cut(s)	141
Eco24I	GRGCYC	1 cut(s)	14
Eco47I	GGWCC	1 cut(s)	603
Eco52I	CGGCCG	1 cut(s)	141
Eco53kI	GAGCTC	1 cut(s)	12
EcoICRI	GAGCTC	1 cut(s)	12
EcoO109I	RGGNCCY	1 cut(s)	603
EcoRII	CCWGG	1 cut(s)	641
EcoT38I	GRGCYC	1 cut(s)	14
Esp3I	CGTCTC	1 cut(s)	78
FaeI	CATG	3 cut(s)	98, 483, 681
FaqI	GGGAC	2 cut(s)	82, 616
FatI	CATG	3 cut(s)	94, 479, 677
Fnu4HI	GCNGC	5 cut(s)	203, 212, 374, 656, 704
FokI	GGATG	1 cut(s)	583
FriOI	GRGCYC	1 cut(s)	14
Fsp4HI	GCNGC	5 cut(s)	203, 212, 374, 656, 704
FspI	TGCGCA	1 cut(s)	438
GlaI	GCGC	3 cut(s)	162, 164, 438
GluI	GCNGC	5 cut(s)	203, 212, 374, 656, 704
GsaI	CCCAGC	1 cut(s)	581
GsuI	CTGGAG	1 cut(s)	191
HaeIII	GGCC	2 cut(s)	143, 214
HapII	CCGG	2 cut(s)	239, 600
HhaI	GCGC	3 cut(s)	163, 165, 439
Hin1I	GRCGYC	1 cut(s)	71
Hin1II	CATG	3 cut(s)	98, 483, 681
Hin6I	GCGC	3 cut(s)	161, 163, 437
HinP1I	GCGC	3 cut(s)	161, 163, 437
HindIII	AAGCTT	1 cut(s)	410
HinfI	GANTC	5 cut(s)	185, 244, 469, 553, 593
HpaII	CCGG	2 cut(s)	239, 600
HphI	GGTGA	4 cut(s)	414, 478, 553, 701
Hpy188I	TCNGA	4 cut(s)	60, 78, 521, 526
Hpy188III	TCNNGA	1 cut(s)	277
Hpy99I	CGWCG	1 cut(s)	173
HpyCH4III	ACNGT	1 cut(s)	532
HpyCH4IV	ACGT	1 cut(s)	71
HpyCH4V	TGCA	7 cut(s)	266, 332, 390, 408, 483, 563, 572
HpyF10VI	GCNNNNNNNGC	4 cut(s)	208, 211, 569, 578
HpyF3I	CTNAG	4 cut(s)	8, 59, 218, 518
HpySE526I	ACGT	1 cut(s)	71
Hsp92I	GRCGYC	1 cut(s)	71
Hsp92II	CATG	3 cut(s)	98, 483, 681
HspAI	GCGC	3 cut(s)	161, 163, 437
KflI	GGGWCCC	1 cut(s)	603
Kzo9I	GATC	3 cut(s)	273, 521, 695
LguI	GCTCTTC	1 cut(s)	363
LmnI	GCTCC	2 cut(s)	118, 210
Lsp1109I	GCAGC	4 cut(s)	214, 385, 667, 715
LweI	GCATC	2 cut(s)	253, 445
MaeII	ACGT	1 cut(s)	71
MalI	GATC	3 cut(s)	275, 523, 697
MboI	GATC	3 cut(s)	273, 521, 695
MboII	GAAGA	2 cut(s)	344, 380
MhlI	GDGCHC	1 cut(s)	14
MluCI	AATT	2 cut(s)	26, 630
MlyI	GAGTC	1 cut(s)	253
MnlI	CCTC	8 cut(s)	54, 136, 225, 264, 331, 514, 532, 717
MroXI	GAANNNNTTC	1 cut(s)	296
MseI	TTAA	2 cut(s)	393, 626
MslI	CAYNNNNRTG	2 cut(s)	301, 539
MspA1I	CMGCKG	1 cut(s)	211
MspI	CCGG	2 cut(s)	239, 600
MspR9I	CCNGG	2 cut(s)	601, 643
MvaI	CCWGG	1 cut(s)	643
MvnI	CGCG	2 cut(s)	163, 431
MwoI	GCNNNNNNNGC	4 cut(s)	208, 211, 569, 578
NciI	CCSGG	1 cut(s)	601
NdeII	GATC	3 cut(s)	273, 521, 695
NlaIII	CATG	3 cut(s)	98, 483, 681
NlaIV	GGNNCC	4 cut(s)	34, 198, 604, 605
NmeAIII	GCCGAG	1 cut(s)	154
NsbI	TGCGCA	1 cut(s)	438
NspI	RCATGY	1 cut(s)	98
PauI	GCGCGC	1 cut(s)	161
PciI	ACATGT	1 cut(s)	94
PciSI	GCTCTTC	1 cut(s)	363
PdmI	GAANNNNTTC	1 cut(s)	296
PfeI	GAWTC	4 cut(s)	185, 469, 553, 593
Pfl23II	CGTACG	1 cut(s)	48
PfoI	TCCNGGA	1 cut(s)	599
PkrI	GCNGC	5 cut(s)	204, 213, 375, 657, 705
PleI	GAGTC	1 cut(s)	252
PpsI	GAGTC	1 cut(s)	252
PpuMI	RGGWCCY	1 cut(s)	603
PscI	ACATGT	1 cut(s)	94
PshAI	GACNNNNGTC	1 cut(s)	608
Psp124BI	GAGCTC	1 cut(s)	14
Psp5II	RGGWCCY	1 cut(s)	603
Psp6I	CCWGG	1 cut(s)	641
PspFI	CCCAGC	1 cut(s)	577
PspGI	CCWGG	1 cut(s)	641
PspLI	CGTACG	1 cut(s)	48
PspN4I	GGNNCC	4 cut(s)	34, 198, 604, 605
PspPI	GGNCC	1 cut(s)	603
PspPPI	RGGWCCY	1 cut(s)	603
PstNI	CAGNNNCTG	1 cut(s)	530
PteI	GCGCGC	1 cut(s)	161
RsaI	GTAC	1 cut(s)	50
RsaNI	GTAC	1 cut(s)	49
RseI	CAYNNNNRTG	2 cut(s)	301, 539
SacI	GAGCTC	1 cut(s)	14
SapI	GCTCTTC	1 cut(s)	363
SaqAI	TTAA	2 cut(s)	393, 626
SatI	GCNGC	5 cut(s)	203, 212, 374, 656, 704
Sau3AI	GATC	3 cut(s)	273, 521, 695
Sau96I	GGNCC	1 cut(s)	603
SchI	GAGTC	1 cut(s)	253
ScrFI	CCNGG	2 cut(s)	601, 643
SduI	GDGCHC	1 cut(s)	14
SfaNI	GCATC	2 cut(s)	253, 445
SfcI	CTRYAG	1 cut(s)	509
SinI	GGWCC	1 cut(s)	603
SmiMI	CAYNNNNRTG	2 cut(s)	301, 539
Sse9I	AATT	2 cut(s)	26, 630
SsiI	CCGC	3 cut(s)	200, 211, 431
SspI	AATATT	1 cut(s)	624
SstI	GAGCTC	1 cut(s)	14
StyD4I	CCNGG	2 cut(s)	599, 641
TaaI	ACNGT	1 cut(s)	532
TaiI	ACGT	1 cut(s)	74
TaqI	TCGA	3 cut(s)	276, 366, 673
TasI	AATT	2 cut(s)	26, 630
TauI	GCSGC	1 cut(s)	214
TfiI	GAWTC	4 cut(s)	185, 469, 553, 593
Tru1I	TTAA	2 cut(s)	393, 626
Tru9I	TTAA	2 cut(s)	393, 626
TscAI	CASTG	2 cut(s)	12, 721
TseI	GCWGC	4 cut(s)	202, 373, 655, 703
TspDTI	ATGAA	1 cut(s)	122
TspGWI	ACGGA	1 cut(s)	36
TspRI	CASTG	2 cut(s)	12, 721
VpaK11BI	GGWCC	1 cut(s)	603
XapI	RAATTY	1 cut(s)	26
XceI	RCATGY	1 cut(s)	98
XmnI	GAANNNNTTC	1 cut(s)	296
ZraI	GACGTC	1 cut(s)	72

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.