Rw0G015180

Protein of unknown function (DUF1997)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Contig00691
OG0008468
Physical Location & Seq
Forward (+)
42267 .. 45482
3216 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw0G015180.1

Sequence Viewer

Length: 666 bp
ATGGCAGTGAGCTCACTCTCCATAAACTTGTGGCATCCCTTCGAATACTCTCGCACCGGAAGGTCTCCACGTCTCAAACTCAAGCATGTCCTCTTCGCTCCCACGAAACGCCGCCTTCGCGTTTCGGCCGTTTCGACGCCGCCCAAAGCCCGTTTCGTCGCCCGTCGGACCCAGTCCGTCCCGGTTCCCCAGCTCCAACGGCCTCTAAGTGAATATATGAGCTTGCCGGCGAGTCAGTACTCGGTTTTGGACGCGGAGAGGATAGAGAGAGTGGACGACAACACGTTCAGGTGCTATGTGTATAGATTCAAGTTCTTTGCTTTCGAGGTCTGCCCTGTTCTTCTTGTTAGAGTCGAAGAGCAGCCCAATGGCTGTTGCATTAAGCTCTTGTCCTGCAAGCTTGAGGGGTCACCCATTGTGGTTGCGCAGAATGACAAGTTTGACGCTTATATGGTGAACCAAATATCATGTGGAAGCAACAAAAGCAGTTCATCACTGCAACAACTCAGTTCAGAAACTGTCATTGAGGTCAGTATTGAGATTCCGTTTGCATTTCGTGCAATTCCAGCGCAAGCTATTGAATCTTCTGGGACCCAAGTCCTTGAACAAATACTAAGAATTATGCTTCCTCGATTTTTAGCGCAGGAAACAATTTCATCAAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1997

Protein Analysis

221

Amino Acids

24.99

Weight (kDa)

9.45

Isoelectric Point (pI)

71.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1997 PF09366 68 - 215 6.8e-38 Protein of unknown function (DUF1997)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 426
AccII CGCG 2 cut(s) 120, 254
AciI CCGC 3 cut(s) 112, 140, 254
AcoI YGGCCR 1 cut(s) 126
AcyI GRCGYC 1 cut(s) 137
AfaI GTAC 1 cut(s) 239
AflIII ACRYGT 1 cut(s) 282
AgsI TTSAA 3 cut(s) 310, 581, 605
AjiI CACGTC 1 cut(s) 71
AjuI GAANNNNNNNTTGG 2 cut(s) 137, 169
AluBI AGCT 6 cut(s) 12, 193, 222, 385, 400, 575
AluI AGCT 6 cut(s) 12, 193, 222, 385, 400, 575
Alw21I GWGCWC 1 cut(s) 14
Alw26I GTCTC 2 cut(s) 69, 77
AlwNI CAGNNNCTG 1 cut(s) 518
AoxI GGCC 2 cut(s) 126, 200
ApeKI GCWGC 1 cut(s) 361
AspLEI GCGC 3 cut(s) 427, 571, 643
AspS9I GGNCC 2 cut(s) 168, 591
AsuC2I CCSGG 1 cut(s) 182
AsuHPI GGTGA 2 cut(s) 402, 466
AsuII TTCGAA 1 cut(s) 42
AvaII GGWCC 2 cut(s) 168, 591
BanII GRGCYC 1 cut(s) 14
Bbv12I GWGCWC 1 cut(s) 14
BbvI GCAGC 1 cut(s) 373
BceAI ACGGC 2 cut(s) 113, 215
BcnI CCSGG 1 cut(s) 182
BcoDI GTCTC 2 cut(s) 69, 77
BisI GCNGC 3 cut(s) 112, 140, 362
BlsI GCNGC 3 cut(s) 113, 141, 363
BmcAI AGTACT 1 cut(s) 239
Bme1390I CCNGG 1 cut(s) 182
Bme18I GGWCC 2 cut(s) 168, 591
BmgBI CACGTC 1 cut(s) 71
BmgT120I GGNCC 2 cut(s) 168, 591
BmiI GGNNCC 4 cut(s) 170, 186, 592, 593
BmrFI CCNGG 1 cut(s) 182
BmrI ACTGGG 1 cut(s) 166
BmsI GCATC 1 cut(s) 43
BmuI ACTGGG 1 cut(s) 166
BoxI GACNNNNGTC 1 cut(s) 596
Bpu14I TTCGAA 1 cut(s) 42
BpuEI CTTGAG 2 cut(s) 65, 422
BpuMI CCSGG 1 cut(s) 182
BsaHI GRCGYC 1 cut(s) 137
BsaI GGTCTC 1 cut(s) 69
BsaWI WCCGGW 1 cut(s) 56
Bse118I RCCGGY 1 cut(s) 226
Bse1I ACTGG 1 cut(s) 172
BseGI GGATG 1 cut(s) 34
BseMII CTCAG 1 cut(s) 520
BseNI ACTGG 1 cut(s) 172
BseX3I CGGCCG 1 cut(s) 126
BseXI GCAGC 1 cut(s) 373
BseYI CCCAGC 1 cut(s) 189
Bsh1236I CGCG 2 cut(s) 120, 254
Bsh1285I CGRYCG 1 cut(s) 129
BshFI GGCC 2 cut(s) 128, 202
BsiEI CGRYCG 1 cut(s) 129
BsiHKAI GWGCWC 1 cut(s) 14
BsiSI CCGG 3 cut(s) 57, 182, 227
BslFI GGGAC 2 cut(s) 164, 604
BsmAI GTCTC 2 cut(s) 69, 77
BsmBI CGTCTC 1 cut(s) 77
BsmFI GGGAC 2 cut(s) 164, 604
BsnI GGCC 2 cut(s) 128, 202
Bso31I GGTCTC 1 cut(s) 69
Bsp119I TTCGAA 1 cut(s) 42
Bsp1286I GDGCHC 1 cut(s) 14
BspACI CCGC 3 cut(s) 112, 140, 254
BspANI GGCC 2 cut(s) 128, 202
BspCNI CTCAG 1 cut(s) 519
BspFNI CGCG 2 cut(s) 120, 254
BspLI GGNNCC 4 cut(s) 170, 186, 592, 593
BspQI GCTCTTC 1 cut(s) 351
BspT104I TTCGAA 1 cut(s) 42
BspTNI GGTCTC 1 cut(s) 69
BsrFI RCCGGY 1 cut(s) 226
BsrI ACTGG 1 cut(s) 172
BssAI RCCGGY 1 cut(s) 226
BssNI GRCGYC 1 cut(s) 137
Bst4CI ACNGT 1 cut(s) 520
Bst6I CTCTTC 2 cut(s) 98, 351
BstACI GRCGYC 1 cut(s) 137
BstAPI GCANNNNNTGC 1 cut(s) 557
BstBI TTCGAA 1 cut(s) 42
BstC8I GCNNGC 4 cut(s) 224, 228, 398, 573
BstDEI CTNAG 3 cut(s) 206, 506, 614
BstEII GGTNACC 1 cut(s) 408
BstF5I GGATG 1 cut(s) 34
BstFNI CGCG 2 cut(s) 120, 254
BstHHI GCGC 3 cut(s) 427, 571, 643
BstMAI GTCTC 2 cut(s) 69, 77
BstMCI CGRYCG 1 cut(s) 129
BstMWI GCNNNNNNNGC 5 cut(s) 117, 199, 483, 557, 566
BstNSI RCATGY 1 cut(s) 89
BstPAI GACNNNNGTC 1 cut(s) 596
BstPI GGTNACC 1 cut(s) 408
BstSCI CCNGG 1 cut(s) 180
BstUI CGCG 2 cut(s) 120, 254
BstV1I GCAGC 1 cut(s) 373
BstZI CGGCCG 1 cut(s) 126
BsuRI GGCC 2 cut(s) 128, 202
BtrI CACGTC 1 cut(s) 71
BtsCI GGATG 1 cut(s) 34
BtsI GCAGTG 2 cut(s) 12, 494
BtsIMutI CAGTG 2 cut(s) 12, 494
Cac8I GCNNGC 4 cut(s) 224, 228, 398, 573
CaiI CAGNNNCTG 1 cut(s) 518
CfoI GCGC 3 cut(s) 427, 571, 643
Cfr10I RCCGGY 1 cut(s) 226
Cfr13I GGNCC 2 cut(s) 168, 591
CseI GACGC 3 cut(s) 145, 260, 452
Csp6I GTAC 1 cut(s) 238
CviAII CATG 2 cut(s) 86, 468
CviQI GTAC 1 cut(s) 238
DdeI CTNAG 3 cut(s) 206, 506, 614
EaeI YGGCCR 1 cut(s) 126
EagI CGGCCG 1 cut(s) 126
Eam1104I CTCTTC 2 cut(s) 98, 351
EarI CTCTTC 2 cut(s) 98, 351
Ecl136II GAGCTC 1 cut(s) 12
EclXI CGGCCG 1 cut(s) 126
Eco24I GRGCYC 1 cut(s) 14
Eco31I GGTCTC 1 cut(s) 69
Eco47I GGWCC 2 cut(s) 168, 591
Eco52I CGGCCG 1 cut(s) 126
Eco53kI GAGCTC 1 cut(s) 12
Eco91I GGTNACC 1 cut(s) 408
EcoICRI GAGCTC 1 cut(s) 12
EcoO109I RGGNCCY 1 cut(s) 591
EcoO65I GGTNACC 1 cut(s) 408
EcoT38I GRGCYC 1 cut(s) 14
Esp3I CGTCTC 1 cut(s) 77
FaeI CATG 2 cut(s) 89, 471
FaqI GGGAC 2 cut(s) 164, 604
FatI CATG 2 cut(s) 85, 467
Fnu4HI GCNGC 3 cut(s) 112, 140, 362
FokI GGATG 1 cut(s) 21
FriOI GRGCYC 1 cut(s) 14
Fsp4HI GCNGC 3 cut(s) 112, 140, 362
FspI TGCGCA 1 cut(s) 426
GlaI GCGC 3 cut(s) 426, 570, 642
GluI GCNGC 3 cut(s) 112, 140, 362
GsaI CCCAGC 1 cut(s) 193
HaeIII GGCC 2 cut(s) 128, 202
HapII CCGG 3 cut(s) 57, 182, 227
HgaI GACGC 3 cut(s) 145, 260, 452
HhaI GCGC 3 cut(s) 427, 571, 643
Hin1I GRCGYC 1 cut(s) 137
Hin1II CATG 2 cut(s) 89, 471
Hin6I GCGC 3 cut(s) 425, 569, 641
HinP1I GCGC 3 cut(s) 425, 569, 641
HindIII AAGCTT 1 cut(s) 398
HinfI GANTC 5 cut(s) 232, 306, 351, 541, 581
HpaII CCGG 3 cut(s) 57, 182, 227
HphI GGTGA 2 cut(s) 402, 466
Hpy166II GTNNAC 2 cut(s) 274, 457
Hpy188I TCNGA 2 cut(s) 168, 514
Hpy8I GTNNAC 2 cut(s) 274, 457
Hpy99I CGWCG 3 cut(s) 139, 161, 168
HpyAV CCTTC 3 cut(s) 49, 54, 125
HpyCH4III ACNGT 1 cut(s) 520
HpyCH4IV ACGT 2 cut(s) 70, 284
HpyCH4V TGCA 5 cut(s) 378, 396, 499, 551, 560
HpyF10VI GCNNNNNNNGC 5 cut(s) 117, 199, 483, 557, 566
HpyF3I CTNAG 3 cut(s) 206, 506, 614
HpySE526I ACGT 2 cut(s) 70, 284
Hsp92I GRCGYC 1 cut(s) 137
Hsp92II CATG 2 cut(s) 89, 471
HspAI GCGC 3 cut(s) 425, 569, 641
KflI GGGWCCC 1 cut(s) 591
KroI GCCGGC 1 cut(s) 226
KroNI GCCGGC 1 cut(s) 228
LguI GCTCTTC 1 cut(s) 351
LmnI GCTCC 2 cut(s) 103, 198
Lsp1109I GCAGC 1 cut(s) 373
LweI GCATC 1 cut(s) 43
MaeII ACGT 2 cut(s) 70, 284
MaeIII GTNAC 1 cut(s) 408
MboII GAAGA 4 cut(s) 85, 332, 368, 576
MhlI GDGCHC 1 cut(s) 14
MluCI AATT 3 cut(s) 561, 618, 651
MlyI GAGTC 2 cut(s) 241, 360
MmeI TCCRAC 2 cut(s) 146, 220
MnlI CCTC 7 cut(s) 101, 213, 252, 319, 397, 520, 639
MroNI GCCGGC 1 cut(s) 226
MseI TTAA 1 cut(s) 381
MspI CCGG 3 cut(s) 57, 182, 227
MspR9I CCNGG 1 cut(s) 182
MvnI CGCG 2 cut(s) 120, 254
MwoI GCNNNNNNNGC 5 cut(s) 117, 199, 483, 557, 566
NaeI GCCGGC 1 cut(s) 228
NciI CCSGG 1 cut(s) 182
NgoMIV GCCGGC 1 cut(s) 226
NlaIII CATG 2 cut(s) 89, 471
NlaIV GGNNCC 4 cut(s) 170, 186, 592, 593
NmuCI GTSAC 1 cut(s) 408
NsbI TGCGCA 1 cut(s) 426
NspI RCATGY 1 cut(s) 89
NspV TTCGAA 1 cut(s) 42
PciSI GCTCTTC 1 cut(s) 351
PcsI WCGNNNNNNNCGW 1 cut(s) 131
PdiI GCCGGC 1 cut(s) 228
PfeI GAWTC 3 cut(s) 306, 541, 581
PflFI GACNNNGTC 1 cut(s) 172
PkrI GCNGC 3 cut(s) 113, 141, 363
PleI GAGTC 2 cut(s) 240, 359
PpsI GAGTC 2 cut(s) 240, 359
PpuMI RGGWCCY 1 cut(s) 591
PshAI GACNNNNGTC 1 cut(s) 596
Psp124BI GAGCTC 1 cut(s) 14
Psp5II RGGWCCY 1 cut(s) 591
PspEI GGTNACC 1 cut(s) 408
PspFI CCCAGC 1 cut(s) 189
PspN4I GGNNCC 4 cut(s) 170, 186, 592, 593
PspPI GGNCC 2 cut(s) 168, 591
PspPPI RGGWCCY 1 cut(s) 591
PstNI CAGNNNCTG 1 cut(s) 518
PsyI GACNNNGTC 1 cut(s) 172
RsaI GTAC 1 cut(s) 239
RsaNI GTAC 1 cut(s) 238
SacI GAGCTC 1 cut(s) 14
SapI GCTCTTC 1 cut(s) 351
SaqAI TTAA 1 cut(s) 381
SatI GCNGC 3 cut(s) 112, 140, 362
Sau96I GGNCC 2 cut(s) 168, 591
ScaI AGTACT 1 cut(s) 239
SchI GAGTC 2 cut(s) 241, 360
ScrFI CCNGG 1 cut(s) 182
SduI GDGCHC 1 cut(s) 14
SfaNI GCATC 1 cut(s) 43
SfuI TTCGAA 1 cut(s) 42
SinI GGWCC 2 cut(s) 168, 591
SmlI CTYRAG 2 cut(s) 80, 401
SmoI CTYRAG 2 cut(s) 80, 401
Sse9I AATT 3 cut(s) 561, 618, 651
SsiI CCGC 3 cut(s) 112, 140, 254
SstI GAGCTC 1 cut(s) 14
StyD4I CCNGG 1 cut(s) 180
TaaI ACNGT 1 cut(s) 520
TaiI ACGT 2 cut(s) 73, 287
TaqI TCGA 5 cut(s) 42, 134, 324, 354, 631
TasI AATT 3 cut(s) 561, 618, 651
TatI WGTACW 1 cut(s) 237
TauI GCSGC 2 cut(s) 114, 142
TfiI GAWTC 3 cut(s) 306, 541, 581
Tru1I TTAA 1 cut(s) 381
Tru9I TTAA 1 cut(s) 381
TscAI CASTG 2 cut(s) 12, 501
TseFI GTSAC 1 cut(s) 408
TseI GCWGC 1 cut(s) 361
Tsp45I GTSAC 1 cut(s) 408
TspDTI ATGAA 2 cut(s) 480, 645
TspGWI ACGGA 2 cut(s) 166, 534
TspRI CASTG 2 cut(s) 12, 501
Tth111I GACNNNGTC 1 cut(s) 172
VpaK11BI GGWCC 2 cut(s) 168, 591
XceI RCATGY 1 cut(s) 89
XcmI CCANNNNNNNNNTGG 1 cut(s) 467
ZrmI AGTACT 1 cut(s) 239
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.