Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0040159.1

Orthogroup ID

OG0008468

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 833

Gene Structure 833 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0040159.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 445 bp

atggcagtgagctcactctccataaacttgtggcatcccttcgaatactctcgcaccggaaggtctccacgtctcaaactcaagcatgtcctcttcgctcccacgaaacgccgccttcgcgtttcggccctttcgacgccgcccaaagcccgtttcgtcgcccgtcggacccagtccgtcccggttccccagctccaacggcctctaagtgaatatatgagcttgccggcgagtcagtactcggttttggacgcggagaggatagagagagtggacgacaacacgttcaggtgctatgtgtatagattcaagttctttgctttcgaggtctgccctgttcttcttgttagagtcgaagagcagcccaatggctgttgcattaagctcttgtcctgcaagcttgaggggtcacccattgtggttgcgcagaatgacaagtttgacg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1997

Protein Analysis

148

Amino Acids

17.05

Weight (kDa)

9.75

Isoelectric Point (pI)

65.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008468)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G04440 AT5G04440
fragaria_vesca	FvH4_7g06650 FvH4_7g06650 FvH4_7g06650 FvH4_7g06650 FvH4_7g06650 FvH4_7g06650
malus_domestica	MD07G1074500.v1.1
prunus_persica	Prupe.2G094500_v2.0.a1
pyrus_communis	pycom07g05850
rosa_chinensis	RchiOBHm_Chr1g0336111
rosa_laevigata	RLG00000029378
rosa_multiflora	Rmu_sc0001258.1_g000002 Rmu_sc0040159.1_g000001
rosa_roxburghii	Rroxscaffold_4G00315870
rosa_rugosa	Rorug01G0123000 Rorug01G0123100
rosa_samantha	Rh1AG143700 Rh1BG113300 Rh1CG135400 Rh1DG150100
rosa_wichuraiana	Rw0G015180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	426
AccII	CGCG	2 cut(s)	120, 254
AciI	CCGC	3 cut(s)	112, 140, 254
AcyI	GRCGYC	1 cut(s)	137
AfaI	GTAC	1 cut(s)	239
AflIII	ACRYGT	1 cut(s)	282
AgsI	TTSAA	1 cut(s)	310
AjiI	CACGTC	1 cut(s)	71
AjuI	GAANNNNNNNTTGG	2 cut(s)	137, 169
AluBI	AGCT	5 cut(s)	12, 193, 222, 385, 400
AluI	AGCT	5 cut(s)	12, 193, 222, 385, 400
Alw21I	GWGCWC	1 cut(s)	14
Alw26I	GTCTC	2 cut(s)	69, 77
AoxI	GGCC	2 cut(s)	126, 200
ApeKI	GCWGC	1 cut(s)	361
AspLEI	GCGC	1 cut(s)	427
AspS9I	GGNCC	2 cut(s)	127, 168
AsuC2I	CCSGG	1 cut(s)	182
AsuHPI	GGTGA	1 cut(s)	402
AsuII	TTCGAA	1 cut(s)	42
AvaII	GGWCC	1 cut(s)	168
BanII	GRGCYC	1 cut(s)	14
Bbv12I	GWGCWC	1 cut(s)	14
BbvI	GCAGC	1 cut(s)	373
BceAI	ACGGC	1 cut(s)	215
BcnI	CCSGG	1 cut(s)	182
BcoDI	GTCTC	2 cut(s)	69, 77
BisI	GCNGC	3 cut(s)	112, 140, 362
BlsI	GCNGC	3 cut(s)	113, 141, 363
BmcAI	AGTACT	1 cut(s)	239
Bme1390I	CCNGG	1 cut(s)	182
Bme18I	GGWCC	1 cut(s)	168
BmgBI	CACGTC	1 cut(s)	71
BmgT120I	GGNCC	2 cut(s)	127, 168
BmiI	GGNNCC	2 cut(s)	170, 186
BmrFI	CCNGG	1 cut(s)	182
BmrI	ACTGGG	1 cut(s)	166
BmsI	GCATC	1 cut(s)	43
BmuI	ACTGGG	1 cut(s)	166
Bpu14I	TTCGAA	1 cut(s)	42
BpuEI	CTTGAG	2 cut(s)	65, 422
BpuMI	CCSGG	1 cut(s)	182
BsaHI	GRCGYC	1 cut(s)	137
BsaI	GGTCTC	1 cut(s)	69
BsaWI	WCCGGW	1 cut(s)	56
Bse118I	RCCGGY	1 cut(s)	226
Bse1I	ACTGG	1 cut(s)	172
BseGI	GGATG	1 cut(s)	34
BseNI	ACTGG	1 cut(s)	172
BseXI	GCAGC	1 cut(s)	373
BseYI	CCCAGC	1 cut(s)	189
Bsh1236I	CGCG	2 cut(s)	120, 254
BshFI	GGCC	2 cut(s)	128, 202
BsiHKAI	GWGCWC	1 cut(s)	14
BsiSI	CCGG	3 cut(s)	57, 182, 227
BslFI	GGGAC	1 cut(s)	164
BsmAI	GTCTC	2 cut(s)	69, 77
BsmBI	CGTCTC	1 cut(s)	77
BsmFI	GGGAC	1 cut(s)	164
BsnI	GGCC	2 cut(s)	128, 202
Bso31I	GGTCTC	1 cut(s)	69
Bsp119I	TTCGAA	1 cut(s)	42
Bsp1286I	GDGCHC	1 cut(s)	14
BspACI	CCGC	3 cut(s)	112, 140, 254
BspANI	GGCC	2 cut(s)	128, 202
BspFNI	CGCG	2 cut(s)	120, 254
BspLI	GGNNCC	2 cut(s)	170, 186
BspQI	GCTCTTC	1 cut(s)	351
BspT104I	TTCGAA	1 cut(s)	42
BspTNI	GGTCTC	1 cut(s)	69
BsrFI	RCCGGY	1 cut(s)	226
BsrI	ACTGG	1 cut(s)	172
BssAI	RCCGGY	1 cut(s)	226
BssNI	GRCGYC	1 cut(s)	137
Bst6I	CTCTTC	2 cut(s)	98, 351
BstACI	GRCGYC	1 cut(s)	137
BstBI	TTCGAA	1 cut(s)	42
BstC8I	GCNNGC	3 cut(s)	224, 228, 398
BstDEI	CTNAG	1 cut(s)	206
BstEII	GGTNACC	1 cut(s)	408
BstF5I	GGATG	1 cut(s)	34
BstFNI	CGCG	2 cut(s)	120, 254
BstHHI	GCGC	1 cut(s)	427
BstMAI	GTCTC	2 cut(s)	69, 77
BstMWI	GCNNNNNNNGC	2 cut(s)	117, 199
BstNSI	RCATGY	1 cut(s)	89
BstPI	GGTNACC	1 cut(s)	408
BstSCI	CCNGG	1 cut(s)	180
BstUI	CGCG	2 cut(s)	120, 254
BstV1I	GCAGC	1 cut(s)	373
BsuRI	GGCC	2 cut(s)	128, 202
BtrI	CACGTC	1 cut(s)	71
BtsCI	GGATG	1 cut(s)	34
BtsI	GCAGTG	1 cut(s)	12
BtsIMutI	CAGTG	1 cut(s)	12
Cac8I	GCNNGC	3 cut(s)	224, 228, 398
CfoI	GCGC	1 cut(s)	427
Cfr10I	RCCGGY	1 cut(s)	226
Cfr13I	GGNCC	2 cut(s)	127, 168
CseI	GACGC	2 cut(s)	145, 260
Csp6I	GTAC	1 cut(s)	238
CviAII	CATG	1 cut(s)	86
CviQI	GTAC	1 cut(s)	238
DdeI	CTNAG	1 cut(s)	206
Eam1104I	CTCTTC	2 cut(s)	98, 351
EarI	CTCTTC	2 cut(s)	98, 351
Ecl136II	GAGCTC	1 cut(s)	12
Eco24I	GRGCYC	1 cut(s)	14
Eco31I	GGTCTC	1 cut(s)	69
Eco47I	GGWCC	1 cut(s)	168
Eco53kI	GAGCTC	1 cut(s)	12
Eco91I	GGTNACC	1 cut(s)	408
EcoICRI	GAGCTC	1 cut(s)	12
EcoO65I	GGTNACC	1 cut(s)	408
EcoT38I	GRGCYC	1 cut(s)	14
Esp3I	CGTCTC	1 cut(s)	77
FaeI	CATG	1 cut(s)	89
FaiI	YATR	6 cut(s)	23, 87, 216, 218, 297, 303
FaqI	GGGAC	1 cut(s)	164
FatI	CATG	1 cut(s)	85
Fnu4HI	GCNGC	3 cut(s)	112, 140, 362
FokI	GGATG	1 cut(s)	21
FriOI	GRGCYC	1 cut(s)	14
Fsp4HI	GCNGC	3 cut(s)	112, 140, 362
FspI	TGCGCA	1 cut(s)	426
GlaI	GCGC	1 cut(s)	426
GluI	GCNGC	3 cut(s)	112, 140, 362
GsaI	CCCAGC	1 cut(s)	193
HaeIII	GGCC	2 cut(s)	128, 202
HapII	CCGG	3 cut(s)	57, 182, 227
HgaI	GACGC	2 cut(s)	145, 260
HhaI	GCGC	1 cut(s)	427
Hin1I	GRCGYC	1 cut(s)	137
Hin1II	CATG	1 cut(s)	89
Hin6I	GCGC	1 cut(s)	425
HinP1I	GCGC	1 cut(s)	425
HindIII	AAGCTT	1 cut(s)	398
HinfI	GANTC	3 cut(s)	232, 306, 351
HpaII	CCGG	3 cut(s)	57, 182, 227
HphI	GGTGA	1 cut(s)	402
Hpy166II	GTNNAC	1 cut(s)	274
Hpy188I	TCNGA	1 cut(s)	168
Hpy8I	GTNNAC	1 cut(s)	274
Hpy99I	CGWCG	3 cut(s)	139, 161, 168
HpyAV	CCTTC	3 cut(s)	49, 54, 125
HpyCH4IV	ACGT	2 cut(s)	70, 284
HpyCH4V	TGCA	2 cut(s)	378, 396
HpyF10VI	GCNNNNNNNGC	2 cut(s)	117, 199
HpyF3I	CTNAG	1 cut(s)	206
HpySE526I	ACGT	2 cut(s)	70, 284
Hsp92I	GRCGYC	1 cut(s)	137
Hsp92II	CATG	1 cut(s)	89
HspAI	GCGC	1 cut(s)	425
KroI	GCCGGC	1 cut(s)	226
KroNI	GCCGGC	1 cut(s)	228
LguI	GCTCTTC	1 cut(s)	351
LmnI	GCTCC	2 cut(s)	103, 198
LpnPI	CCDG	8 cut(s)	70, 185, 195, 203, 240, 274, 348, 406
Lsp1109I	GCAGC	1 cut(s)	373
LweI	GCATC	1 cut(s)	43
MaeII	ACGT	2 cut(s)	70, 284
MaeIII	GTNAC	1 cut(s)	408
MboII	GAAGA	3 cut(s)	85, 332, 368
MhlI	GDGCHC	1 cut(s)	14
MlyI	GAGTC	2 cut(s)	241, 360
MmeI	TCCRAC	2 cut(s)	146, 220
MnlI	CCTC	5 cut(s)	101, 213, 252, 319, 397
MroNI	GCCGGC	1 cut(s)	226
MseI	TTAA	1 cut(s)	381
MspI	CCGG	3 cut(s)	57, 182, 227
MspR9I	CCNGG	1 cut(s)	182
MvnI	CGCG	2 cut(s)	120, 254
MwoI	GCNNNNNNNGC	2 cut(s)	117, 199
NaeI	GCCGGC	1 cut(s)	228
NciI	CCSGG	1 cut(s)	182
NgoMIV	GCCGGC	1 cut(s)	226
NlaIII	CATG	1 cut(s)	89
NlaIV	GGNNCC	2 cut(s)	170, 186
NmuCI	GTSAC	1 cut(s)	408
NsbI	TGCGCA	1 cut(s)	426
NspI	RCATGY	1 cut(s)	89
NspV	TTCGAA	1 cut(s)	42
PciSI	GCTCTTC	1 cut(s)	351
PcsI	WCGNNNNNNNCGW	1 cut(s)	131
PdiI	GCCGGC	1 cut(s)	228
PfeI	GAWTC	1 cut(s)	306
PflFI	GACNNNGTC	1 cut(s)	172
PkrI	GCNGC	3 cut(s)	113, 141, 363
PleI	GAGTC	2 cut(s)	240, 359
PpsI	GAGTC	2 cut(s)	240, 359
Psp124BI	GAGCTC	1 cut(s)	14
PspEI	GGTNACC	1 cut(s)	408
PspFI	CCCAGC	1 cut(s)	189
PspN4I	GGNNCC	2 cut(s)	170, 186
PspPI	GGNCC	2 cut(s)	127, 168
PsyI	GACNNNGTC	1 cut(s)	172
RsaI	GTAC	1 cut(s)	239
RsaNI	GTAC	1 cut(s)	238
SacI	GAGCTC	1 cut(s)	14
SapI	GCTCTTC	1 cut(s)	351
SaqAI	TTAA	1 cut(s)	381
SatI	GCNGC	3 cut(s)	112, 140, 362
Sau96I	GGNCC	2 cut(s)	127, 168
ScaI	AGTACT	1 cut(s)	239
SchI	GAGTC	2 cut(s)	241, 360
ScrFI	CCNGG	1 cut(s)	182
SduI	GDGCHC	1 cut(s)	14
SfaNI	GCATC	1 cut(s)	43
SfuI	TTCGAA	1 cut(s)	42
SinI	GGWCC	1 cut(s)	168
SmlI	CTYRAG	2 cut(s)	80, 401
SmoI	CTYRAG	2 cut(s)	80, 401
SsiI	CCGC	3 cut(s)	112, 140, 254
SstI	GAGCTC	1 cut(s)	14
StyD4I	CCNGG	1 cut(s)	180
TaiI	ACGT	2 cut(s)	73, 287
TaqI	TCGA	4 cut(s)	42, 134, 324, 354
TatI	WGTACW	1 cut(s)	237
TauI	GCSGC	2 cut(s)	114, 142
TfiI	GAWTC	1 cut(s)	306
Tru1I	TTAA	1 cut(s)	381
Tru9I	TTAA	1 cut(s)	381
TscAI	CASTG	1 cut(s)	12
TseFI	GTSAC	1 cut(s)	408
TseI	GCWGC	1 cut(s)	361
Tsp45I	GTSAC	1 cut(s)	408
TspGWI	ACGGA	1 cut(s)	166
TspRI	CASTG	1 cut(s)	12
Tth111I	GACNNNGTC	1 cut(s)	172
VpaK11BI	GGWCC	1 cut(s)	168
XceI	RCATGY	1 cut(s)	89
ZrmI	AGTACT	1 cut(s)	239

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.