Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001258.1

Orthogroup ID

OG0008468

Physical Location & Seq

Genomic Coordinates Reverse (-)

7776 .. 13705

Gene Structure 5930 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001258.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 717 bp

atggcagtgagctcactctccataaacttgtggcatcccttcgaatactctcgcaccggaaggtctccacgtctcaaactcaagcatgtcctcttcgctcccacgaaacgccgccttcgcgtttcggccttttcgacgccgcccaaagcccgtttcgtcgcccgtcggacccagtccgtcccggttccccagctcgaacggcctctaagtgaatatatgagcttgccggcgagtcagtactcggttttggacgcggagaggatagagagagtggacgacaacacgttcaggtgctatgtgtatagattcaagttctttgctttcgaggtctgccctgttcttcttgttagagtcgaagagcagcccaatggctgttgcattaagctcttgtcctgcaagcttgaggggtcacccattgtggttgcgcagaatgacaagtttgacgcttatatggtgaaccaaatatcatgtggaagcaacaaaagcagttcatcactgcaacaactcagttcagaaactgtcattgaggtcagtattgagattccgtttgcatttcgtgccattccagcgcaagctattgaatcttctgggacccaagtccttgaacaaatactaagaattatgcttcctcgatttttagagcagcttgtgaaggactatcgagcatgggcctctggtgatagatcaagacagcctcttggaactggcgagatatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1997

Protein Analysis

238

Amino Acids

27.01

Weight (kDa)

9.32

Isoelectric Point (pI)

67.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008468)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G04440 AT5G04440
fragaria_vesca	FvH4_7g06650 FvH4_7g06650 FvH4_7g06650 FvH4_7g06650 FvH4_7g06650 FvH4_7g06650
malus_domestica	MD07G1074500.v1.1
prunus_persica	Prupe.2G094500_v2.0.a1
pyrus_communis	pycom07g05850
rosa_chinensis	RchiOBHm_Chr1g0336111
rosa_laevigata	RLG00000029378
rosa_multiflora	Rmu_sc0001258.1_g000002 Rmu_sc0040159.1_g000001
rosa_roxburghii	Rroxscaffold_4G00315870
rosa_rugosa	Rorug01G0123000 Rorug01G0123100
rosa_samantha	Rh1AG143700 Rh1BG113300 Rh1CG135400 Rh1DG150100
rosa_wichuraiana	Rw0G015180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	426
AccII	CGCG	2 cut(s)	120, 254
AciI	CCGC	3 cut(s)	112, 140, 254
AcyI	GRCGYC	1 cut(s)	137
AfaI	GTAC	1 cut(s)	239
AflIII	ACRYGT	1 cut(s)	282
AgsI	TTSAA	3 cut(s)	310, 581, 605
AjiI	CACGTC	1 cut(s)	71
AjuI	GAANNNNNNNTTGG	2 cut(s)	137, 169
AluBI	AGCT	7 cut(s)	12, 193, 222, 385, 400, 575, 646
AluI	AGCT	7 cut(s)	12, 193, 222, 385, 400, 575, 646
Alw21I	GWGCWC	1 cut(s)	14
Alw26I	GTCTC	2 cut(s)	69, 77
AlwNI	CAGNNNCTG	1 cut(s)	518
AoxI	GGCC	3 cut(s)	126, 200, 669
ApeKI	GCWGC	2 cut(s)	361, 643
AspLEI	GCGC	2 cut(s)	427, 571
AspS9I	GGNCC	3 cut(s)	168, 591, 669
AsuC2I	CCSGG	1 cut(s)	182
AsuHPI	GGTGA	3 cut(s)	402, 466, 689
AsuII	TTCGAA	1 cut(s)	42
AvaII	GGWCC	2 cut(s)	168, 591
BanII	GRGCYC	1 cut(s)	14
Bbv12I	GWGCWC	1 cut(s)	14
BbvI	GCAGC	2 cut(s)	373, 655
BceAI	ACGGC	1 cut(s)	215
BcnI	CCSGG	1 cut(s)	182
BcoDI	GTCTC	2 cut(s)	69, 77
BisI	GCNGC	4 cut(s)	112, 140, 362, 644
BlsI	GCNGC	4 cut(s)	113, 141, 363, 645
BmcAI	AGTACT	1 cut(s)	239
Bme1390I	CCNGG	1 cut(s)	182
Bme18I	GGWCC	2 cut(s)	168, 591
BmgBI	CACGTC	1 cut(s)	71
BmgT120I	GGNCC	3 cut(s)	168, 591, 669
BmiI	GGNNCC	4 cut(s)	170, 186, 592, 593
BmrFI	CCNGG	1 cut(s)	182
BmrI	ACTGGG	1 cut(s)	166
BmsI	GCATC	1 cut(s)	43
BmuI	ACTGGG	1 cut(s)	166
BoxI	GACNNNNGTC	1 cut(s)	596
Bpu14I	TTCGAA	1 cut(s)	42
BpuEI	CTTGAG	2 cut(s)	65, 422
BpuMI	CCSGG	1 cut(s)	182
BsaHI	GRCGYC	1 cut(s)	137
BsaI	GGTCTC	1 cut(s)	69
BsaWI	WCCGGW	1 cut(s)	56
Bse118I	RCCGGY	1 cut(s)	226
Bse1I	ACTGG	2 cut(s)	172, 709
BseGI	GGATG	1 cut(s)	34
BseMII	CTCAG	1 cut(s)	520
BseNI	ACTGG	2 cut(s)	172, 709
BseXI	GCAGC	2 cut(s)	373, 655
BseYI	CCCAGC	1 cut(s)	189
Bsh1236I	CGCG	2 cut(s)	120, 254
BshFI	GGCC	3 cut(s)	128, 202, 671
BsiHKAI	GWGCWC	1 cut(s)	14
BsiSI	CCGG	3 cut(s)	57, 182, 227
BslFI	GGGAC	2 cut(s)	164, 604
BsmAI	GTCTC	2 cut(s)	69, 77
BsmBI	CGTCTC	1 cut(s)	77
BsmFI	GGGAC	2 cut(s)	164, 604
BsnI	GGCC	3 cut(s)	128, 202, 671
Bso31I	GGTCTC	1 cut(s)	69
Bsp119I	TTCGAA	1 cut(s)	42
Bsp1286I	GDGCHC	1 cut(s)	14
Bsp143I	GATC	1 cut(s)	683
BspACI	CCGC	3 cut(s)	112, 140, 254
BspANI	GGCC	3 cut(s)	128, 202, 671
BspCNI	CTCAG	1 cut(s)	519
BspFNI	CGCG	2 cut(s)	120, 254
BspLI	GGNNCC	4 cut(s)	170, 186, 592, 593
BspQI	GCTCTTC	1 cut(s)	351
BspT104I	TTCGAA	1 cut(s)	42
BspTNI	GGTCTC	1 cut(s)	69
BsrFI	RCCGGY	1 cut(s)	226
BsrI	ACTGG	2 cut(s)	172, 709
BssAI	RCCGGY	1 cut(s)	226
BssMI	GATC	1 cut(s)	683
BssNI	GRCGYC	1 cut(s)	137
Bst4CI	ACNGT	1 cut(s)	520
Bst6I	CTCTTC	2 cut(s)	98, 351
BstACI	GRCGYC	1 cut(s)	137
BstAPI	GCANNNNNTGC	1 cut(s)	557
BstBI	TTCGAA	1 cut(s)	42
BstC8I	GCNNGC	4 cut(s)	224, 228, 398, 573
BstDEI	CTNAG	3 cut(s)	206, 506, 614
BstEII	GGTNACC	1 cut(s)	408
BstF5I	GGATG	1 cut(s)	34
BstFNI	CGCG	2 cut(s)	120, 254
BstHHI	GCGC	2 cut(s)	427, 571
BstKTI	GATC	1 cut(s)	686
BstMAI	GTCTC	2 cut(s)	69, 77
BstMBI	GATC	1 cut(s)	683
BstMWI	GCNNNNNNNGC	5 cut(s)	117, 199, 483, 557, 566
BstNSI	RCATGY	1 cut(s)	89
BstPAI	GACNNNNGTC	1 cut(s)	596
BstPI	GGTNACC	1 cut(s)	408
BstSCI	CCNGG	1 cut(s)	180
BstUI	CGCG	2 cut(s)	120, 254
BstV1I	GCAGC	2 cut(s)	373, 655
BsuRI	GGCC	3 cut(s)	128, 202, 671
BtrI	CACGTC	1 cut(s)	71
BtsCI	GGATG	1 cut(s)	34
BtsI	GCAGTG	2 cut(s)	12, 494
BtsIMutI	CAGTG	2 cut(s)	12, 494
Cac8I	GCNNGC	4 cut(s)	224, 228, 398, 573
CaiI	CAGNNNCTG	1 cut(s)	518
CfoI	GCGC	2 cut(s)	427, 571
Cfr10I	RCCGGY	1 cut(s)	226
Cfr13I	GGNCC	3 cut(s)	168, 591, 669
CseI	GACGC	3 cut(s)	145, 260, 452
Csp6I	GTAC	1 cut(s)	238
CviAII	CATG	3 cut(s)	86, 468, 666
CviQI	GTAC	1 cut(s)	238
DdeI	CTNAG	3 cut(s)	206, 506, 614
DpnI	GATC	1 cut(s)	685
DpnII	GATC	1 cut(s)	683
Eam1104I	CTCTTC	2 cut(s)	98, 351
EarI	CTCTTC	2 cut(s)	98, 351
Ecl136II	GAGCTC	1 cut(s)	12
Eco24I	GRGCYC	1 cut(s)	14
Eco31I	GGTCTC	1 cut(s)	69
Eco47I	GGWCC	2 cut(s)	168, 591
Eco53kI	GAGCTC	1 cut(s)	12
Eco91I	GGTNACC	1 cut(s)	408
EcoICRI	GAGCTC	1 cut(s)	12
EcoO109I	RGGNCCY	1 cut(s)	591
EcoO65I	GGTNACC	1 cut(s)	408
EcoT38I	GRGCYC	1 cut(s)	14
Esp3I	CGTCTC	1 cut(s)	77
FaeI	CATG	3 cut(s)	89, 471, 669
FaqI	GGGAC	2 cut(s)	164, 604
FatI	CATG	3 cut(s)	85, 467, 665
Fnu4HI	GCNGC	4 cut(s)	112, 140, 362, 644
FokI	GGATG	1 cut(s)	21
FriOI	GRGCYC	1 cut(s)	14
Fsp4HI	GCNGC	4 cut(s)	112, 140, 362, 644
FspI	TGCGCA	1 cut(s)	426
GlaI	GCGC	2 cut(s)	426, 570
GluI	GCNGC	4 cut(s)	112, 140, 362, 644
GsaI	CCCAGC	1 cut(s)	193
HaeIII	GGCC	3 cut(s)	128, 202, 671
HapII	CCGG	3 cut(s)	57, 182, 227
HgaI	GACGC	3 cut(s)	145, 260, 452
HhaI	GCGC	2 cut(s)	427, 571
Hin1I	GRCGYC	1 cut(s)	137
Hin1II	CATG	3 cut(s)	89, 471, 669
Hin6I	GCGC	2 cut(s)	425, 569
HinP1I	GCGC	2 cut(s)	425, 569
HindIII	AAGCTT	1 cut(s)	398
HinfI	GANTC	5 cut(s)	232, 306, 351, 541, 581
HpaII	CCGG	3 cut(s)	57, 182, 227
HphI	GGTGA	3 cut(s)	402, 466, 689
Hpy166II	GTNNAC	2 cut(s)	274, 457
Hpy188I	TCNGA	2 cut(s)	168, 514
Hpy188III	TCNNGA	1 cut(s)	687
Hpy8I	GTNNAC	2 cut(s)	274, 457
Hpy99I	CGWCG	3 cut(s)	139, 161, 168
HpyAV	CCTTC	4 cut(s)	49, 54, 125, 646
HpyCH4III	ACNGT	1 cut(s)	520
HpyCH4IV	ACGT	2 cut(s)	70, 284
HpyCH4V	TGCA	4 cut(s)	378, 396, 499, 551
HpyF10VI	GCNNNNNNNGC	5 cut(s)	117, 199, 483, 557, 566
HpyF3I	CTNAG	3 cut(s)	206, 506, 614
HpySE526I	ACGT	2 cut(s)	70, 284
Hsp92I	GRCGYC	1 cut(s)	137
Hsp92II	CATG	3 cut(s)	89, 471, 669
HspAI	GCGC	2 cut(s)	425, 569
KflI	GGGWCCC	1 cut(s)	591
KroI	GCCGGC	1 cut(s)	226
KroNI	GCCGGC	1 cut(s)	228
Kzo9I	GATC	1 cut(s)	683
LguI	GCTCTTC	1 cut(s)	351
LmnI	GCTCC	1 cut(s)	103
Lsp1109I	GCAGC	2 cut(s)	373, 655
LweI	GCATC	1 cut(s)	43
MaeII	ACGT	2 cut(s)	70, 284
MaeIII	GTNAC	1 cut(s)	408
MalI	GATC	1 cut(s)	685
MboI	GATC	1 cut(s)	683
MboII	GAAGA	4 cut(s)	85, 332, 368, 576
MhlI	GDGCHC	1 cut(s)	14
MluCI	AATT	1 cut(s)	618
MlyI	GAGTC	2 cut(s)	241, 360
MmeI	TCCRAC	1 cut(s)	146
MnlI	CCTC	9 cut(s)	101, 213, 252, 319, 397, 520, 639, 682, 705
MroNI	GCCGGC	1 cut(s)	226
MseI	TTAA	1 cut(s)	381
MspI	CCGG	3 cut(s)	57, 182, 227
MspR9I	CCNGG	1 cut(s)	182
MvnI	CGCG	2 cut(s)	120, 254
MwoI	GCNNNNNNNGC	5 cut(s)	117, 199, 483, 557, 566
NaeI	GCCGGC	1 cut(s)	228
NciI	CCSGG	1 cut(s)	182
NdeII	GATC	1 cut(s)	683
NgoMIV	GCCGGC	1 cut(s)	226
NlaIII	CATG	3 cut(s)	89, 471, 669
NlaIV	GGNNCC	4 cut(s)	170, 186, 592, 593
NmuCI	GTSAC	1 cut(s)	408
NsbI	TGCGCA	1 cut(s)	426
NspI	RCATGY	1 cut(s)	89
NspV	TTCGAA	1 cut(s)	42
PciSI	GCTCTTC	1 cut(s)	351
PcsI	WCGNNNNNNNCGW	1 cut(s)	131
PdiI	GCCGGC	1 cut(s)	228
PfeI	GAWTC	3 cut(s)	306, 541, 581
PflFI	GACNNNGTC	1 cut(s)	172
PkrI	GCNGC	4 cut(s)	113, 141, 363, 645
PleI	GAGTC	2 cut(s)	240, 359
PpsI	GAGTC	2 cut(s)	240, 359
PpuMI	RGGWCCY	1 cut(s)	591
PshAI	GACNNNNGTC	1 cut(s)	596
Psp124BI	GAGCTC	1 cut(s)	14
Psp5II	RGGWCCY	1 cut(s)	591
PspEI	GGTNACC	1 cut(s)	408
PspFI	CCCAGC	1 cut(s)	189
PspN4I	GGNNCC	4 cut(s)	170, 186, 592, 593
PspPI	GGNCC	3 cut(s)	168, 591, 669
PspPPI	RGGWCCY	1 cut(s)	591
PstNI	CAGNNNCTG	1 cut(s)	518
PsyI	GACNNNGTC	1 cut(s)	172
RsaI	GTAC	1 cut(s)	239
RsaNI	GTAC	1 cut(s)	238
SacI	GAGCTC	1 cut(s)	14
SapI	GCTCTTC	1 cut(s)	351
SaqAI	TTAA	1 cut(s)	381
SatI	GCNGC	4 cut(s)	112, 140, 362, 644
Sau3AI	GATC	1 cut(s)	683
Sau96I	GGNCC	3 cut(s)	168, 591, 669
ScaI	AGTACT	1 cut(s)	239
SchI	GAGTC	2 cut(s)	241, 360
ScrFI	CCNGG	1 cut(s)	182
SduI	GDGCHC	1 cut(s)	14
SfaNI	GCATC	1 cut(s)	43
SfuI	TTCGAA	1 cut(s)	42
SinI	GGWCC	2 cut(s)	168, 591
SmlI	CTYRAG	2 cut(s)	80, 401
SmoI	CTYRAG	2 cut(s)	80, 401
Sse9I	AATT	1 cut(s)	618
SsiI	CCGC	3 cut(s)	112, 140, 254
SstI	GAGCTC	1 cut(s)	14
StyD4I	CCNGG	1 cut(s)	180
TaaI	ACNGT	1 cut(s)	520
TaiI	ACGT	2 cut(s)	73, 287
TaqI	TCGA	7 cut(s)	42, 134, 195, 324, 354, 631, 661
TasI	AATT	1 cut(s)	618
TatI	WGTACW	1 cut(s)	237
TauI	GCSGC	2 cut(s)	114, 142
TfiI	GAWTC	3 cut(s)	306, 541, 581
Tru1I	TTAA	1 cut(s)	381
Tru9I	TTAA	1 cut(s)	381
TscAI	CASTG	2 cut(s)	12, 501
TseFI	GTSAC	1 cut(s)	408
TseI	GCWGC	2 cut(s)	361, 643
Tsp45I	GTSAC	1 cut(s)	408
TspDTI	ATGAA	1 cut(s)	480
TspGWI	ACGGA	2 cut(s)	166, 534
TspRI	CASTG	2 cut(s)	12, 501
Tth111I	GACNNNGTC	1 cut(s)	172
VpaK11BI	GGWCC	2 cut(s)	168, 591
XceI	RCATGY	1 cut(s)	89
XcmI	CCANNNNNNNNNTGG	1 cut(s)	467
ZrmI	AGTACT	1 cut(s)	239

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.