Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0008468

Physical Location & Seq

Genomic Coordinates Forward (+)

5121252 .. 5125769

Gene Structure 4518 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g05850.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 873 bp

ATGGTGATGCTTTTGGGTCAAAATTATCATTCCTATTATCCTCCACCCAACCCAACCGCTGCTTCTTCTTCTTCCTCTTCCTCTGCCTTGTATACAACTATTTTCCCTACTTTTTGGGGAAAAGAAAAATTAAAAAATATTTGTTCATATATAAAAACAGAGAAGATGGCACTGAGCTCATTCTCTATAAAATTCGGTTCGATTTCGTGTCCCTACGAAGGCCACAGGACCGGTACGTCTACGAGACTCCTCAAGCTCAACCATGTCCTTTCGGTTCGCGTTTCGGCCGATTCGACCCCAAAAGCCCGATTCGTCGCCCGCCGAACCGAGTCCGTCTCGGTTCCGCAGCTCCAGCGTCCTCTAAGTGAGTATATGAGCTTGCCGGCGAGTCAGTACTCGGTTTTGGACGCGGAGAGGATCGAGAGAGTGGATGCGAATACATTCAGGTGCTATGTGTATAGGTTCAAGTTCTTTGCGTTTGAGGTTTGCCCTGTTCTTCTTGTTAAAGTCGAAGAGCAGCCCAATGGCTGTTGCATTAAGCTCTTGTCCTGCAAGCTGGATGGTTCGCCGATTGCAGTTGCGCAGAATGACAAGTTTGACGCTTTTATGGTGAACCAAATATCGTGTGCTAGCAACCAAACCAACTCCTCACGACAAGAACTCAAATCAGATACTGTCATTGAGGTTAGCATTGAGATTCCTTTTGCATTTCGTGCAATCCCAGTGCAAGCTATTGAATCATCTGGGACCCAAGTCCTTGAACAAGTACTAAGAATTATGCTTCCCAGGTTTATGTCACAGCTTGTGAGGGATTATCGAGCCTGGGCTTCTGGTGATAGATCAAGGCAGCCTCTTGGAACTGGCGAGATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1997

Protein Analysis

291

Amino Acids

32.49

Weight (kDa)

9.07

Isoelectric Point (pI)

51.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008468)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G04440 AT5G04440
fragaria_vesca	FvH4_7g06650 FvH4_7g06650 FvH4_7g06650 FvH4_7g06650 FvH4_7g06650 FvH4_7g06650
malus_domestica	MD07G1074500.v1.1
prunus_persica	Prupe.2G094500_v2.0.a1
pyrus_communis	pycom07g05850
rosa_chinensis	RchiOBHm_Chr1g0336111
rosa_laevigata	RLG00000029378
rosa_multiflora	Rmu_sc0001258.1_g000002 Rmu_sc0040159.1_g000001
rosa_roxburghii	Rroxscaffold_4G00315870
rosa_rugosa	Rorug01G0123000 Rorug01G0123100
rosa_samantha	Rh1AG143700 Rh1BG113300 Rh1CG135400 Rh1DG150100
rosa_wichuraiana	Rw0G015180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	235
Acc16I	TGCGCA	1 cut(s)	582
AccI	GTMKAC	2 cut(s)	92, 239
AccII	CGCG	2 cut(s)	279, 410
AciI	CCGC	4 cut(s)	57, 319, 344, 410
AclWI	GGATC	1 cut(s)	425
AcoI	YGGCCR	1 cut(s)	285
AcsI	RAATTY	1 cut(s)	191
AfaI	GTAC	3 cut(s)	235, 395, 768
AfiI	CCNNNNNNNGG	1 cut(s)	218
AgeI	ACCGGT	1 cut(s)	230
AgsI	TTSAA	3 cut(s)	466, 737, 761
AjnI	CCWGG	2 cut(s)	785, 821
AjuI	GAANNNNNNNTTGG	2 cut(s)	46, 78
AluBI	AGCT	8 cut(s)	177, 256, 349, 378, 541, 556, 731, 802
AluI	AGCT	8 cut(s)	177, 256, 349, 378, 541, 556, 731, 802
Alw21I	GWGCWC	1 cut(s)	179
Alw26I	GTCTC	2 cut(s)	238, 340
AlwI	GGATC	1 cut(s)	425
AlwNI	CAGNNNCTG	1 cut(s)	674
AoxI	GGCC	2 cut(s)	220, 285
ApeKI	GCWGC	4 cut(s)	59, 346, 517, 847
ApoI	RAATTY	1 cut(s)	191
AsiGI	ACCGGT	1 cut(s)	230
Asp700I	GAANNNNTTC	1 cut(s)	440
AspLEI	GCGC	1 cut(s)	583
AspS9I	GGNCC	2 cut(s)	228, 747
AsuHPI	GGTGA	3 cut(s)	16, 622, 845
AsuNHI	GCTAGC	1 cut(s)	629
AvaII	GGWCC	2 cut(s)	228, 747
BanII	GRGCYC	1 cut(s)	179
Bbv12I	GWGCWC	1 cut(s)	179
BbvI	GCAGC	4 cut(s)	46, 358, 529, 859
BccI	CCATC	2 cut(s)	160, 554
BciT130I	CCWGG	2 cut(s)	787, 823
BcoDI	GTCTC	2 cut(s)	238, 340
BfaI	CTAG	1 cut(s)	630
BisI	GCNGC	4 cut(s)	60, 347, 518, 848
BlsI	GCNGC	4 cut(s)	61, 348, 519, 849
BmcAI	AGTACT	2 cut(s)	395, 768
Bme1390I	CCNGG	2 cut(s)	787, 823
Bme18I	GGWCC	2 cut(s)	228, 747
BmgT120I	GGNCC	2 cut(s)	228, 747
BmiI	GGNNCC	3 cut(s)	342, 748, 749
BmrFI	CCNGG	2 cut(s)	787, 823
BmrI	ACTGGG	1 cut(s)	716
BmsI	GCATC	1 cut(s)	421
BmtI	GCTAGC	1 cut(s)	633
BmuI	ACTGGG	1 cut(s)	716
BoxI	GACNNNNGTC	1 cut(s)	752
BplI	GAGNNNNNCTC	2 cut(s)	320, 352
BpmI	CTGGAG	1 cut(s)	335
BpuEI	CTTGAG	1 cut(s)	236
BsaJI	CCNNGG	2 cut(s)	785, 822
BsaWI	WCCGGW	1 cut(s)	230
Bsc4I	CCNNNNNNNGG	1 cut(s)	218
Bse118I	RCCGGY	2 cut(s)	230, 382
Bse1I	ACTGG	2 cut(s)	722, 865
BseBI	CCWGG	2 cut(s)	787, 823
BseDI	CCNNGG	2 cut(s)	785, 822
BseGI	GGATG	2 cut(s)	436, 565
BseLI	CCNNNNNNNGG	1 cut(s)	218
BseMII	CTCAG	1 cut(s)	164
BseNI	ACTGG	2 cut(s)	722, 865
BseRI	GAGGAG	2 cut(s)	239, 637
BseX3I	CGGCCG	1 cut(s)	285
BseXI	GCAGC	4 cut(s)	46, 358, 529, 859
Bsh1236I	CGCG	2 cut(s)	279, 410
Bsh1285I	CGRYCG	1 cut(s)	288
BshFI	GGCC	2 cut(s)	222, 287
BshTI	ACCGGT	1 cut(s)	230
BsiEI	CGRYCG	1 cut(s)	288
BsiHKAI	GWGCWC	1 cut(s)	179
BsiSI	CCGG	2 cut(s)	231, 383
BslFI	GGGAC	2 cut(s)	195, 760
BslI	CCNNNNNNNGG	1 cut(s)	218
BsmAI	GTCTC	2 cut(s)	238, 340
BsmBI	CGTCTC	1 cut(s)	340
BsmFI	GGGAC	2 cut(s)	195, 760
BsnI	GGCC	2 cut(s)	222, 287
Bsp1286I	GDGCHC	1 cut(s)	179
Bsp143I	GATC	2 cut(s)	417, 839
BspACI	CCGC	4 cut(s)	57, 319, 344, 410
BspANI	GGCC	2 cut(s)	222, 287
BspCNI	CTCAG	1 cut(s)	165
BspFNI	CGCG	2 cut(s)	279, 410
BspLI	GGNNCC	3 cut(s)	342, 748, 749
BspOI	GCTAGC	1 cut(s)	633
BspPI	GGATC	1 cut(s)	425
BspQI	GCTCTTC	1 cut(s)	507
BsrFI	RCCGGY	2 cut(s)	230, 382
BsrI	ACTGG	2 cut(s)	722, 865
BssAI	RCCGGY	2 cut(s)	230, 382
BssECI	CCNNGG	2 cut(s)	785, 822
BssMI	GATC	2 cut(s)	417, 839
BssNAI	GTATAC	1 cut(s)	93
Bst1107I	GTATAC	1 cut(s)	93
Bst2UI	CCWGG	2 cut(s)	787, 823
Bst4CI	ACNGT	1 cut(s)	676
Bst6I	CTCTTC	2 cut(s)	82, 507
BstAPI	GCANNNNNTGC	1 cut(s)	713
BstC8I	GCNNGC	6 cut(s)	319, 380, 384, 554, 631, 729
BstDEI	CTNAG	3 cut(s)	173, 362, 770
BstF5I	GGATG	2 cut(s)	436, 565
BstFNI	CGCG	2 cut(s)	279, 410
BstHHI	GCGC	1 cut(s)	583
BstKTI	GATC	2 cut(s)	420, 842
BstMAI	GTCTC	2 cut(s)	238, 340
BstMBI	GATC	2 cut(s)	417, 839
BstMCI	CGRYCG	1 cut(s)	288
BstMWI	GCNNNNNNNGC	2 cut(s)	352, 713
BstNI	CCWGG	2 cut(s)	787, 823
BstPAI	GACNNNNGTC	1 cut(s)	752
BstSCI	CCNGG	2 cut(s)	785, 821
BstUI	CGCG	2 cut(s)	279, 410
BstV1I	GCAGC	4 cut(s)	46, 358, 529, 859
BstZ17I	GTATAC	1 cut(s)	93
BstZI	CGGCCG	1 cut(s)	285
BsuRI	GGCC	2 cut(s)	222, 287
BtsCI	GGATG	2 cut(s)	436, 565
BtsIMutI	CAGTG	2 cut(s)	170, 729
Cac8I	GCNNGC	6 cut(s)	319, 380, 384, 554, 631, 729
CaiI	CAGNNNCTG	1 cut(s)	674
CfoI	GCGC	1 cut(s)	583
Cfr10I	RCCGGY	2 cut(s)	230, 382
Cfr13I	GGNCC	2 cut(s)	228, 747
CseI	GACGC	3 cut(s)	344, 416, 608
Csp6I	GTAC	3 cut(s)	234, 394, 767
CspAI	ACCGGT	1 cut(s)	230
CviAII	CATG	1 cut(s)	263
CviQI	GTAC	3 cut(s)	234, 394, 767
DdeI	CTNAG	3 cut(s)	173, 362, 770
DpnI	GATC	2 cut(s)	419, 841
DpnII	GATC	2 cut(s)	417, 839
DrdI	GACNNNNNNGTC	1 cut(s)	235
DseDI	GACNNNNNNGTC	1 cut(s)	235
EaeI	YGGCCR	1 cut(s)	285
EagI	CGGCCG	1 cut(s)	285
Eam1104I	CTCTTC	2 cut(s)	82, 507
EarI	CTCTTC	2 cut(s)	82, 507
Ecl136II	GAGCTC	1 cut(s)	177
EclXI	CGGCCG	1 cut(s)	285
Eco24I	GRGCYC	1 cut(s)	179
Eco47I	GGWCC	2 cut(s)	228, 747
Eco52I	CGGCCG	1 cut(s)	285
Eco53kI	GAGCTC	1 cut(s)	177
EcoICRI	GAGCTC	1 cut(s)	177
EcoO109I	RGGNCCY	1 cut(s)	747
EcoRII	CCWGG	2 cut(s)	785, 821
EcoT38I	GRGCYC	1 cut(s)	179
Esp3I	CGTCTC	1 cut(s)	340
FaeI	CATG	1 cut(s)	266
FaqI	GGGAC	2 cut(s)	195, 760
FatI	CATG	1 cut(s)	262
FauI	CCCGC	1 cut(s)	326
FblI	GTMKAC	2 cut(s)	92, 239
Fnu4HI	GCNGC	4 cut(s)	60, 347, 518, 848
FokI	GGATG	2 cut(s)	443, 572
FriOI	GRGCYC	1 cut(s)	179
Fsp4HI	GCNGC	4 cut(s)	60, 347, 518, 848
FspBI	CTAG	1 cut(s)	630
FspI	TGCGCA	1 cut(s)	582
GlaI	GCGC	1 cut(s)	582
GluI	GCNGC	4 cut(s)	60, 347, 518, 848
GsuI	CTGGAG	1 cut(s)	335
HaeIII	GGCC	2 cut(s)	222, 287
HapII	CCGG	2 cut(s)	231, 383
HgaI	GACGC	3 cut(s)	344, 416, 608
HhaI	GCGC	1 cut(s)	583
Hin1II	CATG	1 cut(s)	266
Hin6I	GCGC	1 cut(s)	581
HinP1I	GCGC	1 cut(s)	581
HinfI	GANTC	7 cut(s)	246, 290, 309, 329, 388, 697, 737
HpaII	CCGG	2 cut(s)	231, 383
HphI	GGTGA	3 cut(s)	16, 622, 845
Hpy166II	GTNNAC	3 cut(s)	93, 240, 613
Hpy188I	TCNGA	1 cut(s)	670
Hpy188III	TCNNGA	2 cut(s)	421, 651
Hpy8I	GTNNAC	3 cut(s)	93, 240, 613
Hpy99I	CGWCG	1 cut(s)	317
HpyAV	CCTTC	1 cut(s)	212
HpyCH4III	ACNGT	1 cut(s)	676
HpyCH4IV	ACGT	1 cut(s)	236
HpyCH4V	TGCA	6 cut(s)	534, 552, 575, 707, 716, 727
HpyF10VI	GCNNNNNNNGC	2 cut(s)	352, 713
HpyF3I	CTNAG	3 cut(s)	173, 362, 770
HpySE526I	ACGT	1 cut(s)	236
Hsp92II	CATG	1 cut(s)	266
HspAI	GCGC	1 cut(s)	581
KflI	GGGWCCC	1 cut(s)	747
KroI	GCCGGC	1 cut(s)	382
KroNI	GCCGGC	1 cut(s)	384
Kzo9I	GATC	2 cut(s)	417, 839
LguI	GCTCTTC	1 cut(s)	507
LmnI	GCTCC	1 cut(s)	354
Lsp1109I	GCAGC	4 cut(s)	46, 358, 529, 859
LweI	GCATC	1 cut(s)	421
MaeI	CTAG	1 cut(s)	630
MaeII	ACGT	1 cut(s)	236
MaeIII	GTNAC	1 cut(s)	795
MalI	GATC	2 cut(s)	419, 841
MboI	GATC	2 cut(s)	417, 839
MboII	GAAGA	7 cut(s)	57, 60, 63, 69, 175, 488, 524
MhlI	GDGCHC	1 cut(s)	179
MluCI	AATT	4 cut(s)	22, 128, 191, 774
MlyI	GAGTC	3 cut(s)	240, 338, 397
MroNI	GCCGGC	1 cut(s)	382
MroXI	GAANNNNTTC	1 cut(s)	440
MseI	TTAA	3 cut(s)	131, 504, 537
MslI	CAYNNNNRTG	1 cut(s)	445
MspA1I	CMGCKG	1 cut(s)	59
MspI	CCGG	2 cut(s)	231, 383
MspR9I	CCNGG	2 cut(s)	787, 823
MvaI	CCWGG	2 cut(s)	787, 823
MvnI	CGCG	2 cut(s)	279, 410
MwoI	GCNNNNNNNGC	2 cut(s)	352, 713
NaeI	GCCGGC	1 cut(s)	384
NdeII	GATC	2 cut(s)	417, 839
NgoMIV	GCCGGC	1 cut(s)	382
NheI	GCTAGC	1 cut(s)	629
NlaIII	CATG	1 cut(s)	266
NlaIV	GGNNCC	3 cut(s)	342, 748, 749
NmuCI	GTSAC	1 cut(s)	795
NsbI	TGCGCA	1 cut(s)	582
PciSI	GCTCTTC	1 cut(s)	507
PcsI	WCGNNNNNNNCGW	1 cut(s)	290
PdiI	GCCGGC	1 cut(s)	384
PdmI	GAANNNNTTC	1 cut(s)	440
PfeI	GAWTC	4 cut(s)	290, 309, 697, 737
PinAI	ACCGGT	1 cut(s)	230
PkrI	GCNGC	4 cut(s)	61, 348, 519, 849
PleI	GAGTC	3 cut(s)	240, 337, 396
PpsI	GAGTC	3 cut(s)	240, 337, 396
PpuMI	RGGWCCY	1 cut(s)	747
PshAI	GACNNNNGTC	1 cut(s)	752
Psp124BI	GAGCTC	1 cut(s)	179
Psp5II	RGGWCCY	1 cut(s)	747
Psp6I	CCWGG	2 cut(s)	785, 821
PspGI	CCWGG	2 cut(s)	785, 821
PspN4I	GGNNCC	3 cut(s)	342, 748, 749
PspPI	GGNCC	2 cut(s)	228, 747
PspPPI	RGGWCCY	1 cut(s)	747
PstNI	CAGNNNCTG	1 cut(s)	674
RsaI	GTAC	3 cut(s)	235, 395, 768
RsaNI	GTAC	3 cut(s)	234, 394, 767
RseI	CAYNNNNRTG	1 cut(s)	445
SacI	GAGCTC	1 cut(s)	179
SapI	GCTCTTC	1 cut(s)	507
SaqAI	TTAA	3 cut(s)	131, 504, 537
SatI	GCNGC	4 cut(s)	60, 347, 518, 848
Sau3AI	GATC	2 cut(s)	417, 839
Sau96I	GGNCC	2 cut(s)	228, 747
ScaI	AGTACT	2 cut(s)	395, 768
SchI	GAGTC	3 cut(s)	240, 338, 397
ScrFI	CCNGG	2 cut(s)	787, 823
SduI	GDGCHC	1 cut(s)	179
SfaNI	GCATC	1 cut(s)	421
SinI	GGWCC	2 cut(s)	228, 747
SmiMI	CAYNNNNRTG	1 cut(s)	445
SmlI	CTYRAG	1 cut(s)	251
SmoI	CTYRAG	1 cut(s)	251
Sse9I	AATT	4 cut(s)	22, 128, 191, 774
SsiI	CCGC	4 cut(s)	57, 319, 344, 410
SspI	AATATT	1 cut(s)	139
SspMI	CTAG	1 cut(s)	630
SstI	GAGCTC	1 cut(s)	179
StyD4I	CCNGG	2 cut(s)	785, 821
TaaI	ACNGT	1 cut(s)	676
TaiI	ACGT	1 cut(s)	239
TaqI	TCGA	5 cut(s)	200, 293, 420, 510, 817
TasI	AATT	4 cut(s)	22, 128, 191, 774
TatI	WGTACW	2 cut(s)	393, 766
TfiI	GAWTC	4 cut(s)	290, 309, 697, 737
Tru1I	TTAA	3 cut(s)	131, 504, 537
Tru9I	TTAA	3 cut(s)	131, 504, 537
TscAI	CASTG	2 cut(s)	177, 729
TseFI	GTSAC	1 cut(s)	795
TseI	GCWGC	4 cut(s)	59, 346, 517, 847
Tsp45I	GTSAC	1 cut(s)	795
TspDTI	ATGAA	1 cut(s)	135
TspGWI	ACGGA	1 cut(s)	322
TspRI	CASTG	2 cut(s)	177, 729
VpaK11BI	GGWCC	2 cut(s)	228, 747
XapI	RAATTY	1 cut(s)	191
XmiI	GTMKAC	2 cut(s)	92, 239
XmnI	GAANNNNTTC	1 cut(s)	440
XspI	CTAG	1 cut(s)	630
ZrmI	AGTACT	2 cut(s)	395, 768

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.