Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0015825

Physical Location & Seq

Genomic Coordinates Reverse (-)

20767272 .. 20772523

Gene Structure 5252 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G153500.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1281 bp

ATGAAGAGTCCAAGTTCACAGCTACATAGTGCTGCAATATTTCCATCTCCAGCTTTTTTATGGAGGTTCAAGGTACTACTTTTCATGATATGGGGATTCAGTTGTTGCAAGATTGGATGGGATTCTGTCATGAGGATGAGTGCAGATTTGCGTAATTTGTTCTTATATGAGGTGTTTTTGTATTATAACCCTCTCCTCCTAGTGACCTTGATGGTTTGGCTCTGGGGAGTTAACTTATGGGTTTTTTCACAGTCCAATGTTGGTTATGCAAAAATATTTGATCTTGATCAAAATCACCTCACTCACAAAGAAATATGGAAGTGTAGCACTTGGATGACAATCATTGTCCCTACTAGCATGACCGCATACCTTTATTTTTACTCCAATGGAAATGTATCATTGGCAGCATTACAACCGGTATCCCTGTATATTGCTGTTGCTATGGTTCTGATATCCCCCTTTGATATTTTCTATTTGTCATCTCGTTACCTCTTGTTAAGGACGCTATGGAGGATAGCTCTTCCATTGCAGGCAATATCATTTCCCGACTTTTTTTTGGCTGATATCCTTACTTCTATGGCAAAGGTGTTTTCTGATTTGGAACGTTCGGTTTGTAGAATGGTTCATAGGCAGGTTGCCACTATCGCCTGGCTTGAAGCTGATTCAGTTTGTGGCAGCCACTCAATTGCAATCCCTCTAGTGCTTGTTTTTCCTTATCTTTGCCGTTTATTTCAATGTCTTCGTCAATTCAAGGATACAAAAGAAAAGACAACCCTTTTCAATGCTTTAAAATATTCGACTGCGGTCCCAGTGATTTTTCTTTCGGCCCTCAAATATCATGTCTTCCCTGATAGGTGGACAAACTTCTACTCCCCACTTTGGCTTCTGTCAAGTGCTGTTAACTCTCTCTATTCCTTCTACTGGGATATAGCTCGAGATTGGGACTTGAGTGGTTTCTCTCGGATTTTCAAGTTCAGCAGATCGAGTATGCTTTCGAACATGTTCTATGGACGAAAATGGGTGTATTTCTGGGTAATAGGAAGCAACCTGGTTCTGCGATGCACATGGACGTACAAATTGTCTTCTCATCTCCGTCACAACTACTTGACGGTGTTTACAATCACTGCATTGGAGATTCTTCGGCGCTTTCAATGGATATTTTTTCGGGTTGAAAATGAGTGGAATAAGATTAACAGGTCAAGCCTTGATCAGCTTCTTCCCATGACTGGCATCCAAGCAGAAGAAGAGATGTTACTTGAAACCAACAACCACATTGTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EXS

Protein Analysis

427

Amino Acids

50.06

Weight (kDa)

9.21

Isoelectric Point (pI)

46.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015825)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G35730
prunus_persica	Prupe.2G153500_v2.0.a1 Prupe.2G153500_v2.0.a1 Prupe.2G153500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0326611 RchiOBHm_Chr1g0352051 RchiOBHm_Chr2g0127371
rosa_laevigata	RLG00000028364
rosa_multiflora	Rmu_sc0002464.1_g000004
rosa_rugosa	Rorug01G0223700
rosa_samantha	Rh1AG238200 Rh1BG208600 Rh1CG222600 Rh1DG235000
rosa_wichuraiana	Rw1G020690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	186
Acc36I	ACCTGC	1 cut(s)	622
AciI	CCGC	2 cut(s)	363, 803
AclI	AACGTT	1 cut(s)	604
AfaI	GTAC	2 cut(s)	75, 1073
AfiI	CCNNNNNNNGG	3 cut(s)	879, 921, 1226
AflIII	ACRYGT	1 cut(s)	999
AgeI	ACCGGT	1 cut(s)	415
AgsI	TTSAA	9 cut(s)	70, 656, 734, 751, 781, 970, 1151, 1172, 1259
AjnI	CCWGG	2 cut(s)	647, 1047
AluBI	AGCT	6 cut(s)	22, 53, 518, 659, 932, 1213
AluI	AGCT	6 cut(s)	22, 53, 518, 659, 932, 1213
Ama87I	CYCGRG	1 cut(s)	933
AoxI	GGCC	1 cut(s)	825
ApeKI	GCWGC	3 cut(s)	32, 404, 675
ArsI	GACNNNNNNTTYG	2 cut(s)	825, 857
AsiGI	ACCGGT	1 cut(s)	415
Asp700I	GAANNNNTTC	1 cut(s)	1001
AspLEI	GCGC	1 cut(s)	1146
AspS9I	GGNCC	2 cut(s)	805, 826
AsuHPI	GGTGA	1 cut(s)	287
AsuII	TTCGAA	1 cut(s)	995
AvaI	CYCGRG	1 cut(s)	933
AvaII	GGWCC	1 cut(s)	805
BarI	GAAGNNNNNNTAC	2 cut(s)	1236, 1268
BbsI	GAAGAC	3 cut(s)	731, 835, 1074
BbvI	GCAGC	3 cut(s)	19, 416, 687
BccI	CCATC	3 cut(s)	52, 111, 205
BceAI	ACGGC	1 cut(s)	708
BciT130I	CCWGG	2 cut(s)	649, 1049
BciVI	GTATCC	2 cut(s)	430, 748
BclI	TGATCA	2 cut(s)	286, 1207
BfaI	CTAG	3 cut(s)	200, 354, 698
BfoI	RGCGCY	1 cut(s)	1147
BfuAI	ACCTGC	1 cut(s)	622
BfuI	GTATCC	2 cut(s)	430, 748
BisI	GCNGC	3 cut(s)	33, 405, 676
BlsI	GCNGC	3 cut(s)	34, 406, 677
Bme1390I	CCNGG	2 cut(s)	649, 1049
Bme18I	GGWCC	1 cut(s)	805
BmeT110I	CYCGRG	1 cut(s)	933
BmgT120I	GGNCC	2 cut(s)	805, 826
BmiI	GGNNCC	1 cut(s)	807
BmrFI	CCNGG	2 cut(s)	649, 1049
BmrI	ACTGGG	2 cut(s)	803, 931
BmsI	GCATC	2 cut(s)	1049, 1239
BmuI	ACTGGG	2 cut(s)	803, 931
BoxI	GACNNNNGTC	1 cut(s)	803
BpiI	GAAGAC	3 cut(s)	731, 835, 1074
BplI	GAGNNNNNCTC	2 cut(s)	502, 534
BpmI	CTGGAG	1 cut(s)	33
Bpu14I	TTCGAA	1 cut(s)	995
BpuEI	CTTGAG	1 cut(s)	967
BsaBI	GATNNNNATC	3 cut(s)	285, 291, 338
BsaWI	WCCGGW	1 cut(s)	415
BsaXI	ACNNNNNCTCC	2 cut(s)	854, 884
Bsc4I	CCNNNNNNNGG	3 cut(s)	879, 921, 1226
Bse118I	RCCGGY	1 cut(s)	415
Bse1I	ACTGG	3 cut(s)	809, 926, 1231
Bse3DI	GCAATG	1 cut(s)	524
Bse8I	GATNNNNATC	3 cut(s)	285, 291, 338
BseBI	CCWGG	2 cut(s)	649, 1049
BseGI	GGATG	4 cut(s)	122, 141, 339, 1230
BseJI	GATNNNNATC	3 cut(s)	285, 291, 338
BseLI	CCNNNNNNNGG	3 cut(s)	879, 921, 1226
BseMI	GCAATG	1 cut(s)	524
BseNI	ACTGG	3 cut(s)	809, 926, 1231
BseRI	GAGGAG	1 cut(s)	185
BseXI	GCAGC	3 cut(s)	19, 416, 687
BsgI	GTGCAG	1 cut(s)	162
BshFI	GGCC	1 cut(s)	827
BshTI	ACCGGT	1 cut(s)	415
BsiHKCI	CYCGRG	1 cut(s)	933
BsiSI	CCGG	1 cut(s)	416
BslFI	GGGAC	3 cut(s)	332, 791, 956
BslI	CCNNNNNNNGG	3 cut(s)	879, 921, 1226
BsmFI	GGGAC	3 cut(s)	332, 791, 956
BsnI	GGCC	1 cut(s)	827
BsoBI	CYCGRG	1 cut(s)	933
Bsp119I	TTCGAA	1 cut(s)	995
Bsp143I	GATC	4 cut(s)	280, 286, 980, 1207
BspACI	CCGC	2 cut(s)	363, 803
BspANI	GGCC	1 cut(s)	827
BspHI	TCATGA	2 cut(s)	84, 129
BspLI	GGNNCC	1 cut(s)	807
BspMI	ACCTGC	1 cut(s)	622
BspQI	GCTCTTC	1 cut(s)	525
BspT104I	TTCGAA	1 cut(s)	995
BsrDI	GCAATG	1 cut(s)	524
BsrFI	RCCGGY	1 cut(s)	415
BsrI	ACTGG	3 cut(s)	809, 926, 1231
BssAI	RCCGGY	1 cut(s)	415
BssMI	GATC	4 cut(s)	280, 286, 980, 1207
Bst2UI	CCWGG	2 cut(s)	649, 1049
Bst4CI	ACNGT	2 cut(s)	252, 1111
Bst6I	CTCTTC	2 cut(s)	525, 1239
BstBI	TTCGAA	1 cut(s)	995
BstC8I	GCNNGC	1 cut(s)	531
BstF5I	GGATG	4 cut(s)	122, 141, 339, 1230
BstH2I	RGCGCY	1 cut(s)	1147
BstHHI	GCGC	1 cut(s)	1146
BstKTI	GATC	4 cut(s)	283, 289, 983, 1210
BstMBI	GATC	4 cut(s)	280, 286, 980, 1207
BstMWI	GCNNNNNNNGC	1 cut(s)	644
BstNI	CCWGG	2 cut(s)	649, 1049
BstNSI	RCATGY	1 cut(s)	1003
BstPAI	GACNNNNGTC	1 cut(s)	803
BstSCI	CCNGG	2 cut(s)	647, 1047
BstV1I	GCAGC	3 cut(s)	19, 416, 687
BstV2I	GAAGAC	3 cut(s)	731, 835, 1074
BsuI	GTATCC	2 cut(s)	430, 748
BsuRI	GGCC	1 cut(s)	827
BtgZI	GCGATG	1 cut(s)	1072
BtsCI	GGATG	4 cut(s)	122, 141, 339, 1230
BtsI	GCAGTG	1 cut(s)	1122
BtsIMutI	CAGTG	2 cut(s)	816, 1122
BveI	ACCTGC	1 cut(s)	622
Cac8I	GCNNGC	1 cut(s)	531
CciI	TCATGA	2 cut(s)	84, 129
CfoI	GCGC	1 cut(s)	1146
Cfr10I	RCCGGY	1 cut(s)	415
Cfr13I	GGNCC	2 cut(s)	805, 826
CseI	GACGC	1 cut(s)	511
CsiI	ACCWGGT	1 cut(s)	1047
Csp6I	GTAC	2 cut(s)	74, 1072
CspAI	ACCGGT	1 cut(s)	415
CviAII	CATG	7 cut(s)	85, 130, 358, 839, 1000, 1065, 1222
CviQI	GTAC	2 cut(s)	74, 1072
DpnI	GATC	4 cut(s)	282, 288, 982, 1209
DpnII	GATC	4 cut(s)	280, 286, 980, 1207
DraI	TTTAAA	1 cut(s)	789
Eam1104I	CTCTTC	2 cut(s)	525, 1239
EarI	CTCTTC	2 cut(s)	525, 1239
Eco32I	GATATC	2 cut(s)	453, 565
Eco47I	GGWCC	1 cut(s)	805
Eco88I	CYCGRG	1 cut(s)	933
EcoRII	CCWGG	2 cut(s)	647, 1047
EcoRV	GATATC	2 cut(s)	453, 565
FaeI	CATG	7 cut(s)	88, 133, 361, 842, 1003, 1068, 1225
FaqI	GGGAC	3 cut(s)	332, 791, 956
FatI	CATG	7 cut(s)	84, 129, 357, 838, 999, 1064, 1221
FbaI	TGATCA	2 cut(s)	286, 1207
Fnu4HI	GCNGC	3 cut(s)	33, 405, 676
FokI	GGATG	4 cut(s)	129, 148, 346, 1217
Fsp4HI	GCNGC	3 cut(s)	33, 405, 676
FspBI	CTAG	3 cut(s)	200, 354, 698
GlaI	GCGC	1 cut(s)	1145
GluI	GCNGC	3 cut(s)	33, 405, 676
GsuI	CTGGAG	1 cut(s)	33
HaeII	RGCGCY	1 cut(s)	1147
HaeIII	GGCC	1 cut(s)	827
HapII	CCGG	1 cut(s)	416
HgaI	GACGC	1 cut(s)	511
HhaI	GCGC	1 cut(s)	1146
Hin1II	CATG	7 cut(s)	88, 133, 361, 842, 1003, 1068, 1225
Hin6I	GCGC	1 cut(s)	1144
HinP1I	GCGC	1 cut(s)	1144
HincII	GTYRAC	2 cut(s)	232, 901
HindII	GTYRAC	2 cut(s)	232, 901
HinfI	GANTC	5 cut(s)	7, 96, 122, 662, 1135
HpaI	GTTAAC	2 cut(s)	232, 901
HpaII	CCGG	1 cut(s)	416
HphI	GGTGA	1 cut(s)	287
Hpy166II	GTNNAC	5 cut(s)	17, 232, 858, 901, 1116
Hpy188I	TCNGA	3 cut(s)	450, 595, 963
Hpy188III	TCNNGA	5 cut(s)	85, 130, 284, 545, 935
Hpy8I	GTNNAC	5 cut(s)	17, 232, 858, 901, 1116
HpyAV	CCTTC	1 cut(s)	925
HpyCH4III	ACNGT	2 cut(s)	252, 1111
HpyCH4IV	ACGT	2 cut(s)	604, 1070
HpyCH4V	TGCA	8 cut(s)	35, 108, 143, 269, 529, 689, 1062, 1127
HpyF10VI	GCNNNNNNNGC	1 cut(s)	644
HpySE526I	ACGT	2 cut(s)	604, 1070
Hsp92II	CATG	7 cut(s)	88, 133, 361, 842, 1003, 1068, 1225
HspAI	GCGC	1 cut(s)	1144
Ksp22I	TGATCA	2 cut(s)	286, 1207
KspAI	GTTAAC	2 cut(s)	232, 901
Kzo9I	GATC	4 cut(s)	280, 286, 980, 1207
LguI	GCTCTTC	1 cut(s)	525
Lsp1109I	GCAGC	3 cut(s)	19, 416, 687
LweI	GCATC	2 cut(s)	1049, 1239
MabI	ACCWGGT	1 cut(s)	1047
MaeI	CTAG	3 cut(s)	200, 354, 698
MaeII	ACGT	2 cut(s)	604, 1070
MaeIII	GTNAC	4 cut(s)	202, 485, 1094, 1251
MalI	GATC	4 cut(s)	282, 288, 982, 1209
MboI	GATC	4 cut(s)	280, 286, 980, 1207
MboII	GAAGA	9 cut(s)	16, 512, 731, 835, 1074, 1130, 1208, 1253, 1256
MfeI	CAATTG	1 cut(s)	684
MluCI	AATT	4 cut(s)	154, 684, 746, 1076
MlyI	GAGTC	1 cut(s)	16
MroXI	GAANNNNTTC	1 cut(s)	1001
MseI	TTAA	5 cut(s)	231, 497, 788, 900, 1191
MslI	CAYNNNNRTG	2 cut(s)	134, 332
MspI	CCGG	1 cut(s)	416
MspR9I	CCNGG	2 cut(s)	649, 1049
MunI	CAATTG	1 cut(s)	684
MvaI	CCWGG	2 cut(s)	649, 1049
MwoI	GCNNNNNNNGC	1 cut(s)	644
NdeII	GATC	4 cut(s)	280, 286, 980, 1207
NlaIII	CATG	7 cut(s)	88, 133, 361, 842, 1003, 1068, 1225
NlaIV	GGNNCC	1 cut(s)	807
NmuCI	GTSAC	2 cut(s)	202, 1094
NspI	RCATGY	1 cut(s)	1003
NspV	TTCGAA	1 cut(s)	995
PaeR7I	CTCGAG	1 cut(s)	933
PagI	TCATGA	2 cut(s)	84, 129
PciI	ACATGT	1 cut(s)	999
PciSI	GCTCTTC	1 cut(s)	525
PdmI	GAANNNNTTC	1 cut(s)	1001
PfeI	GAWTC	4 cut(s)	96, 122, 662, 1135
PinAI	ACCGGT	1 cut(s)	415
PkrI	GCNGC	3 cut(s)	34, 406, 677
PleI	GAGTC	1 cut(s)	15
PpsI	GAGTC	1 cut(s)	15
PscI	ACATGT	1 cut(s)	999
PshAI	GACNNNNGTC	1 cut(s)	803
PsiI	TTATAA	1 cut(s)	186
Psp1406I	AACGTT	1 cut(s)	604
Psp6I	CCWGG	2 cut(s)	647, 1047
PspGI	CCWGG	2 cut(s)	647, 1047
PspN4I	GGNNCC	1 cut(s)	807
PspPI	GGNCC	2 cut(s)	805, 826
RsaI	GTAC	2 cut(s)	75, 1073
RsaNI	GTAC	2 cut(s)	74, 1072
RseI	CAYNNNNRTG	2 cut(s)	134, 332
SapI	GCTCTTC	1 cut(s)	525
SaqAI	TTAA	5 cut(s)	231, 497, 788, 900, 1191
SatI	GCNGC	3 cut(s)	33, 405, 676
Sau3AI	GATC	4 cut(s)	280, 286, 980, 1207
Sau96I	GGNCC	2 cut(s)	805, 826
SchI	GAGTC	1 cut(s)	16
ScrFI	CCNGG	2 cut(s)	649, 1049
SexAI	ACCWGGT	1 cut(s)	1047
SfaNI	GCATC	2 cut(s)	1049, 1239
Sfr274I	CTCGAG	1 cut(s)	933
SfuI	TTCGAA	1 cut(s)	995
SinI	GGWCC	1 cut(s)	805
SlaI	CTCGAG	1 cut(s)	933
SmiMI	CAYNNNNRTG	2 cut(s)	134, 332
SmlI	CTYRAG	2 cut(s)	933, 946
SmoI	CTYRAG	2 cut(s)	933, 946
Sse9I	AATT	4 cut(s)	154, 684, 746, 1076
SsiI	CCGC	2 cut(s)	363, 803
SspI	AATATT	3 cut(s)	39, 276, 794
SspMI	CTAG	3 cut(s)	200, 354, 698
StyD4I	CCNGG	2 cut(s)	647, 1047
TaaI	ACNGT	2 cut(s)	252, 1111
TaiI	ACGT	2 cut(s)	607, 1073
TaqI	TCGA	4 cut(s)	797, 934, 983, 995
TasI	AATT	4 cut(s)	154, 684, 746, 1076
TfiI	GAWTC	4 cut(s)	96, 122, 662, 1135
Tru1I	TTAA	5 cut(s)	231, 497, 788, 900, 1191
Tru9I	TTAA	5 cut(s)	231, 497, 788, 900, 1191
TscAI	CASTG	2 cut(s)	816, 1129
TseFI	GTSAC	2 cut(s)	202, 1094
TseI	GCWGC	3 cut(s)	32, 404, 675
Tsp45I	GTSAC	2 cut(s)	202, 1094
TspDTI	ATGAA	3 cut(s)	17, 73, 614
TspGWI	ACGGA	1 cut(s)	1082
TspRI	CASTG	2 cut(s)	816, 1129
VpaK11BI	GGWCC	1 cut(s)	805
XceI	RCATGY	1 cut(s)	1003
XcmI	CCANNNNNNNNNTGG	1 cut(s)	57
XhoI	CTCGAG	1 cut(s)	933
XmnI	GAANNNNTTC	1 cut(s)	1001
XspI	CTAG	3 cut(s)	200, 354, 698

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.