RLG00000028364

SPX and EXS domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0015825
Physical Location & Seq
Forward (+)
21891623 .. 21896523
4901 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000028364

Sequence Viewer

Length: 1278 bp
ATGAAGAGTCCACTCTCACAGCTACATACTGCTGCAGTTTTTCCATCTCCAGTTCTTCTATGGAGGCTTAAGGTACTACTTTTCATGATATGGGGATTCAGTTGTTGCAAGATTGGATGGGATTCTGCCATGAGAATGAGTGCAGATTTGCGTAATTTATTCTTATATGAGACCTTTTTGTATTATAACGCACCCCTCCTCATGACTTTGATGGTTTGGCTTTGGGGAGTGAACTTATGGGTTTTTTCGCAGGCCAACATTGGCTATGCAAAAATATTTGATCTTGATCAAAATCATCTCACTCACAAAGAAGTATGGAAGTGTAGCACTTGGATGACCATCATTGTCCCTACTAGCATGACAGCATACCTTTACCTTTACTCACACGGAAAATTATTATTGGCTGCATTACTACCAGTGTCCATGTATATTGCTGTTGCTATAGTTCTGATATCCCCCTTTGATATCTTTTATTTGTCATCTCGGTACTTCTTATTGAGGACACTGTGCAGGATAGCTCTTCCAGTGCAGGCTATATCATTTCCTGACTTTTTTGTGGCTGATGTTTTAACTTCTATGTCTAAGGTGTTTTCAGATTTGGAACGTTCAGTCTGCAGAATGGTTCATGGGCTGGTTGCCACTATTGCATGGCTTGAAGCTGATTCAGTTTGTGGCAGCCACTCAATTGGAATACCTCTAGTGCTTGTTTTTCCTTATGTTTGCCGTTTATTTCAATGCCTACGTGAATACAAGGATACAAAAGACAAGACAAACCTTTTCAATGCTTTAAAATATTCGACTGCAGTCCCAGTGATATTTCTTTCGGCCCTTAAATATCATGTCTTCCCTGATAGGTGGACCAACTTTTATGAGCCGCTTTGGCTTCTGTCTGGTATTGTTAACTCGCTGTATTCATTCTACTGGGACATAGCTCAAGATTGGGACTTGAGTGGCTTCACTCGGATTTTCAAGTTCAGCAGACCGAGTTTAGTTTCCTACTTATTATATGGACAAAAATGGGTATATTTTTGGGCAATAGGAAGCAACCTGATCTTGCGATGTGCATGGACATACAAATTATCTGCTCATCTTCGTCATAACTACATGACTGTATTTGCAATCACTGCATTGGAGATTCTTCGACGCTTCCAATGGATATTCTTTCGAGTAGAAAACGAGTGGAATAAGATTAACAAGTCCAGTTATGAACCCCTACCCATGACTATCATCCAAACAGAAGAAGAGACATTGCTTGACACTAACAGTCACAGTGTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
EXS

Protein Analysis

426

Amino Acids

49.62

Weight (kDa)

8.81

Isoelectric Point (pI)

40.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EXS PF03124 59 - 394 2.4e-93 EXS family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 186
AciI CCGC 1 cut(s) 875
AclI AACGTT 1 cut(s) 604
AfaI GTAC 2 cut(s) 75, 488
AflII CTTAAG 1 cut(s) 68
AgsI TTSAA 4 cut(s) 656, 734, 781, 970
AluBI AGCT 4 cut(s) 22, 518, 659, 932
AluI AGCT 4 cut(s) 22, 518, 659, 932
Alw26I GTCTC 2 cut(s) 164, 1238
AoxI GGCC 2 cut(s) 252, 825
ApeKI GCWGC 3 cut(s) 32, 404, 675
AspS9I GGNCC 2 cut(s) 826, 858
AvaII GGWCC 1 cut(s) 858
BbsI GAAGAC 1 cut(s) 835
BbvI GCAGC 3 cut(s) 19, 391, 687
BccI CCATC 4 cut(s) 52, 111, 205, 347
BceAI ACGGC 1 cut(s) 708
BciVI GTATCC 1 cut(s) 748
BclI TGATCA 1 cut(s) 286
BcoDI GTCTC 2 cut(s) 164, 1238
BfaI CTAG 2 cut(s) 354, 698
BfmI CTRYAG 4 cut(s) 33, 441, 613, 801
BfrI CTTAAG 1 cut(s) 68
BfuI GTATCC 1 cut(s) 748
BglI GCCNNNNNGGC 1 cut(s) 880
BisI GCNGC 4 cut(s) 33, 405, 676, 875
BlsI GCNGC 4 cut(s) 34, 406, 677, 876
Bme18I GGWCC 1 cut(s) 858
BmgT120I GGNCC 2 cut(s) 826, 858
BmrI ACTGGG 2 cut(s) 803, 931
BmuI ACTGGG 2 cut(s) 803, 931
BoxI GACNNNNGTC 1 cut(s) 803
BpiI GAAGAC 1 cut(s) 835
BpmI CTGGAG 1 cut(s) 33
BpuEI CTTGAG 2 cut(s) 918, 967
BsaAI YACGTR 1 cut(s) 743
BsaBI GATNNNNATC 3 cut(s) 285, 291, 338
BsaI GGTCTC 1 cut(s) 164
Bse1I ACTGG 6 cut(s) 50, 416, 524, 809, 926, 1200
Bse3DI GCAATG 1 cut(s) 1247
Bse8I GATNNNNATC 3 cut(s) 285, 291, 338
BseGI GGATG 3 cut(s) 122, 339, 1227
BseJI GATNNNNATC 3 cut(s) 285, 291, 338
BseMI GCAATG 1 cut(s) 1247
BseNI ACTGG 6 cut(s) 50, 416, 524, 809, 926, 1200
BseRI GAGGAG 1 cut(s) 188
BseXI GCAGC 3 cut(s) 19, 391, 687
BsgI GTGCAG 3 cut(s) 162, 529, 548
BshFI GGCC 2 cut(s) 254, 827
BslFI GGGAC 4 cut(s) 332, 791, 938, 956
BsmAI GTCTC 2 cut(s) 164, 1238
BsmFI GGGAC 4 cut(s) 332, 791, 938, 956
BsnI GGCC 2 cut(s) 254, 827
Bso31I GGTCTC 1 cut(s) 164
Bsp143I GATC 3 cut(s) 280, 286, 1050
BspACI CCGC 1 cut(s) 875
BspANI GGCC 2 cut(s) 254, 827
BspHI TCATGA 2 cut(s) 84, 201
BspMAI CTGCAG 3 cut(s) 37, 617, 805
BspQI GCTCTTC 1 cut(s) 525
BspTI CTTAAG 1 cut(s) 68
BspTNI GGTCTC 1 cut(s) 164
BsrDI GCAATG 1 cut(s) 1247
BsrI ACTGG 6 cut(s) 50, 416, 524, 809, 926, 1200
BssMI GATC 3 cut(s) 280, 286, 1050
Bst4CI ACNGT 4 cut(s) 507, 1111, 1265, 1271
Bst6I CTCTTC 2 cut(s) 525, 1236
BstAFI CTTAAG 1 cut(s) 68
BstAPI GCANNNNNTGC 1 cut(s) 1124
BstBAI YACGTR 1 cut(s) 743
BstC8I GCNNGC 2 cut(s) 252, 531
BstDEI CTNAG 1 cut(s) 582
BstF5I GGATG 3 cut(s) 122, 339, 1227
BstKTI GATC 3 cut(s) 283, 289, 1053
BstMAI GTCTC 2 cut(s) 164, 1238
BstMBI GATC 3 cut(s) 280, 286, 1050
BstMWI GCNNNNNNNGC 3 cut(s) 644, 880, 1124
BstPAI GACNNNNGTC 1 cut(s) 803
BstSFI CTRYAG 4 cut(s) 33, 441, 613, 801
BstV1I GCAGC 3 cut(s) 19, 391, 687
BstV2I GAAGAC 1 cut(s) 835
BstXI CCANNNNNNTGG 1 cut(s) 686
BsuI GTATCC 1 cut(s) 748
BsuRI GGCC 2 cut(s) 254, 827
BtgZI GCGATG 1 cut(s) 1072
BtsCI GGATG 3 cut(s) 122, 339, 1227
BtsI GCAGTG 1 cut(s) 1122
BtsIMutI CAGTG 6 cut(s) 423, 503, 531, 816, 1122, 1276
Cac8I GCNNGC 2 cut(s) 252, 531
CciI TCATGA 2 cut(s) 84, 201
Cfr13I GGNCC 2 cut(s) 826, 858
CseI GACGC 1 cut(s) 1152
Csp6I GTAC 2 cut(s) 74, 487
CviQI GTAC 2 cut(s) 74, 487
DdeI CTNAG 1 cut(s) 582
DpnI GATC 3 cut(s) 282, 288, 1052
DpnII GATC 3 cut(s) 280, 286, 1050
DraI TTTAAA 1 cut(s) 789
Eam1104I CTCTTC 2 cut(s) 525, 1236
EarI CTCTTC 2 cut(s) 525, 1236
Eco31I GGTCTC 1 cut(s) 164
Eco32I GATATC 2 cut(s) 453, 466
Eco47I GGWCC 1 cut(s) 858
EcoRV GATATC 2 cut(s) 453, 466
FaqI GGGAC 4 cut(s) 332, 791, 938, 956
FbaI TGATCA 1 cut(s) 286
Fnu4HI GCNGC 4 cut(s) 33, 405, 676, 875
FokI GGATG 3 cut(s) 129, 346, 1214
Fsp4HI GCNGC 4 cut(s) 33, 405, 676, 875
FspBI CTAG 2 cut(s) 354, 698
GluI GCNGC 4 cut(s) 33, 405, 676, 875
GsuI CTGGAG 1 cut(s) 33
HaeIII GGCC 2 cut(s) 254, 827
HgaI GACGC 1 cut(s) 1152
HincII GTYRAC 1 cut(s) 901
HindII GTYRAC 1 cut(s) 901
HinfI GANTC 5 cut(s) 7, 96, 122, 662, 1135
HpaI GTTAAC 1 cut(s) 901
Hpy166II GTNNAC 4 cut(s) 11, 232, 858, 901
Hpy188I TCNGA 3 cut(s) 450, 595, 963
Hpy188III TCNNGA 5 cut(s) 85, 202, 284, 545, 935
Hpy8I GTNNAC 4 cut(s) 11, 232, 858, 901
Hpy99I CGWCG 1 cut(s) 1146
HpyCH4III ACNGT 4 cut(s) 507, 1111, 1265, 1271
HpyCH4IV ACGT 2 cut(s) 604, 742
HpyF10VI GCNNNNNNNGC 3 cut(s) 644, 880, 1124
HpyF3I CTNAG 1 cut(s) 582
HpySE526I ACGT 2 cut(s) 604, 742
Ksp22I TGATCA 1 cut(s) 286
KspAI GTTAAC 1 cut(s) 901
Kzo9I GATC 3 cut(s) 280, 286, 1050
LguI GCTCTTC 1 cut(s) 525
Lsp1109I GCAGC 3 cut(s) 19, 391, 687
MaeI CTAG 2 cut(s) 354, 698
MaeII ACGT 2 cut(s) 604, 742
MaeIII GTNAC 1 cut(s) 1265
MalI GATC 3 cut(s) 282, 288, 1052
MboI GATC 3 cut(s) 280, 286, 1050
MboII GAAGA 8 cut(s) 16, 47, 512, 835, 1082, 1130, 1250, 1253
MfeI CAATTG 1 cut(s) 684
MluCI AATT 4 cut(s) 154, 392, 684, 1076
MlyI GAGTC 1 cut(s) 16
MnlI CCTC 5 cut(s) 57, 206, 209, 492, 705
MseI TTAA 6 cut(s) 69, 569, 788, 831, 900, 1191
MslI CAYNNNNRTG 2 cut(s) 134, 332
MspCI CTTAAG 1 cut(s) 68
MunI CAATTG 1 cut(s) 684
MwoI GCNNNNNNNGC 3 cut(s) 644, 880, 1124
NdeII GATC 3 cut(s) 280, 286, 1050
NmuCI GTSAC 1 cut(s) 1265
PagI TCATGA 2 cut(s) 84, 201
PciSI GCTCTTC 1 cut(s) 525
PfeI GAWTC 4 cut(s) 96, 122, 662, 1135
PkrI GCNGC 4 cut(s) 34, 406, 677, 876
PleI GAGTC 1 cut(s) 15
PpsI GAGTC 1 cut(s) 15
Ppu21I YACGTR 1 cut(s) 743
PshAI GACNNNNGTC 1 cut(s) 803
PsiI TTATAA 1 cut(s) 186
Psp1406I AACGTT 1 cut(s) 604
PspPI GGNCC 2 cut(s) 826, 858
PstI CTGCAG 3 cut(s) 37, 617, 805
RsaI GTAC 2 cut(s) 75, 488
RsaNI GTAC 2 cut(s) 74, 487
RseI CAYNNNNRTG 2 cut(s) 134, 332
SapI GCTCTTC 1 cut(s) 525
SaqAI TTAA 6 cut(s) 69, 569, 788, 831, 900, 1191
SatI GCNGC 4 cut(s) 33, 405, 676, 875
Sau3AI GATC 3 cut(s) 280, 286, 1050
Sau96I GGNCC 2 cut(s) 826, 858
SchI GAGTC 1 cut(s) 16
SfcI CTRYAG 4 cut(s) 33, 441, 613, 801
SinI GGWCC 1 cut(s) 858
SmiMI CAYNNNNRTG 2 cut(s) 134, 332
SmlI CTYRAG 3 cut(s) 68, 933, 946
SmoI CTYRAG 3 cut(s) 68, 933, 946
Sse9I AATT 4 cut(s) 154, 392, 684, 1076
SsiI CCGC 1 cut(s) 875
SspI AATATT 2 cut(s) 276, 794
SspMI CTAG 2 cut(s) 354, 698
TaaI ACNGT 4 cut(s) 507, 1111, 1265, 1271
TaiI ACGT 2 cut(s) 607, 745
TaqI TCGA 3 cut(s) 797, 1141, 1165
TaqII GACCGA 1 cut(s) 997
TasI AATT 4 cut(s) 154, 392, 684, 1076
TauI GCSGC 1 cut(s) 877
TfiI GAWTC 4 cut(s) 96, 122, 662, 1135
Tru1I TTAA 6 cut(s) 69, 569, 788, 831, 900, 1191
Tru9I TTAA 6 cut(s) 69, 569, 788, 831, 900, 1191
TscAI CASTG 6 cut(s) 423, 510, 531, 816, 1129, 1276
TseFI GTSAC 1 cut(s) 1265
TseI GCWGC 3 cut(s) 32, 404, 675
Tsp45I GTSAC 1 cut(s) 1265
TspDTI ATGAA 5 cut(s) 17, 73, 614, 903, 1221
TspGWI ACGGA 1 cut(s) 402
TspRI CASTG 6 cut(s) 423, 510, 531, 816, 1129, 1276
Vha464I CTTAAG 1 cut(s) 68
VpaK11BI GGWCC 1 cut(s) 858
XcmI CCANNNNNNNNNTGG 1 cut(s) 57
XspI CTAG 2 cut(s) 354, 698
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.