Rh1DG235000

SPX and EXS domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0015825
Physical Location & Seq
Reverse (-)
44855768 .. 44859142
3375 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG235000.1

Sequence Viewer

Length: 801 bp
ATGAAGAGTCCACTCTCACAGATTCATACCGCTGCAGTGTTTCCATCTCCAGTTATTCTATGGAGGCTTAAGGTACTACTTTTCATGATATGGGGATTCAGTTGTTGCAAGATTGGATGGGATTCTGCCATGAGAATGAGTGCAGATTTGCGTAATTTATTCTTATATGAGGCCTTTTTGTATTATAACCCACCCCTCCTCATGACTTTGATGGTTTGGCTTTGGGGAGTGAACTTATGGGTTTTTTCGCAGGCCAACATTGGCTATGCAAAAATATTTGATCTTGATCAAAATCATCTCATTCACAAAGAAGTATGGAAGTGTAGCACTTGGATGACCATCATTGTCCCTACTAGCATGACAGCATACCTTTACCTTTACTCACACGGAAAATTATTATTGGCTGCATTACTACCAGTGTCCCTGTATATTGCTGTTGCTATAGTTCTGATATCCCCCTTTGATATCTTTTATTTGTCATCTCGGTACTTCTTATTGAGGACGCTGTGCAGGATAGCTCTTCCAGTGCAGGCTATATCATTTCCTGACTTTTTCGTGGCTGATGTTTTAACTTCTATGTCTAAGGTGTTTTCAGATTTGGAACGTTCAGTCTGCAGAATGGTTCATGGGCTGGTTGCCATTATTGCATGGCTTGAAGCTGATTCAGTTTGTGGCAGCCACTCAATTGGAATCCCTCTAGTGCTTGTTTTTCCTTATGTTTGCCGTTTATTTCAATGCCTACGTCAATACAAGGATACAAAAGACAAGACAAACCTTTTCAATGGTAATGACTCATTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
EXS

Protein Analysis

266

Amino Acids

30.49

Weight (kDa)

8.74

Isoelectric Point (pI)

39.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EXS PF03124 59 - 261 3.3e-46 EXS family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 186
AciI CCGC 1 cut(s) 30
AclI AACGTT 1 cut(s) 604
AfaI GTAC 2 cut(s) 75, 488
AflII CTTAAG 1 cut(s) 68
AgsI TTSAA 3 cut(s) 656, 734, 781
AluBI AGCT 2 cut(s) 518, 659
AluI AGCT 2 cut(s) 518, 659
AoxI GGCC 2 cut(s) 171, 252
ApeKI GCWGC 3 cut(s) 32, 404, 675
BbvI GCAGC 3 cut(s) 19, 391, 687
BccI CCATC 4 cut(s) 52, 111, 205, 347
BceAI ACGGC 1 cut(s) 708
BciVI GTATCC 1 cut(s) 748
BclI TGATCA 1 cut(s) 286
BfaI CTAG 2 cut(s) 354, 698
BfmI CTRYAG 3 cut(s) 33, 441, 613
BfrI CTTAAG 1 cut(s) 68
BfuI GTATCC 1 cut(s) 748
BisI GCNGC 3 cut(s) 33, 405, 676
BlsI GCNGC 3 cut(s) 34, 406, 677
BpmI CTGGAG 1 cut(s) 33
BsaBI GATNNNNATC 3 cut(s) 285, 291, 338
Bse1I ACTGG 3 cut(s) 50, 416, 524
Bse8I GATNNNNATC 3 cut(s) 285, 291, 338
BseGI GGATG 2 cut(s) 122, 339
BseJI GATNNNNATC 3 cut(s) 285, 291, 338
BseNI ACTGG 3 cut(s) 50, 416, 524
BseRI GAGGAG 1 cut(s) 188
BseXI GCAGC 3 cut(s) 19, 391, 687
BsgI GTGCAG 3 cut(s) 162, 529, 548
BshFI GGCC 2 cut(s) 173, 254
BslFI GGGAC 2 cut(s) 332, 406
BsmFI GGGAC 2 cut(s) 332, 406
BsnI GGCC 2 cut(s) 173, 254
Bsp143I GATC 2 cut(s) 280, 286
BspACI CCGC 1 cut(s) 30
BspANI GGCC 2 cut(s) 173, 254
BspHI TCATGA 2 cut(s) 84, 201
BspMAI CTGCAG 2 cut(s) 37, 617
BspQI GCTCTTC 1 cut(s) 525
BspTI CTTAAG 1 cut(s) 68
BsrI ACTGG 3 cut(s) 50, 416, 524
BssMI GATC 2 cut(s) 280, 286
Bst6I CTCTTC 1 cut(s) 525
BstAFI CTTAAG 1 cut(s) 68
BstC8I GCNNGC 2 cut(s) 252, 531
BstDEI CTNAG 1 cut(s) 582
BstF5I GGATG 2 cut(s) 122, 339
BstKTI GATC 2 cut(s) 283, 289
BstMBI GATC 2 cut(s) 280, 286
BstMWI GCNNNNNNNGC 1 cut(s) 644
BstSFI CTRYAG 3 cut(s) 33, 441, 613
BstV1I GCAGC 3 cut(s) 19, 391, 687
BstXI CCANNNNNNTGG 1 cut(s) 686
BsuI GTATCC 1 cut(s) 748
BsuRI GGCC 2 cut(s) 173, 254
BtsCI GGATG 2 cut(s) 122, 339
BtsI GCAGTG 1 cut(s) 42
BtsIMutI CAGTG 3 cut(s) 42, 423, 531
Cac8I GCNNGC 2 cut(s) 252, 531
CciI TCATGA 2 cut(s) 84, 201
CseI GACGC 1 cut(s) 511
Csp6I GTAC 2 cut(s) 74, 487
CviAII CATG 6 cut(s) 85, 130, 202, 358, 626, 648
CviQI GTAC 2 cut(s) 74, 487
DdeI CTNAG 1 cut(s) 582
DpnI GATC 2 cut(s) 282, 288
DpnII GATC 2 cut(s) 280, 286
Eam1104I CTCTTC 1 cut(s) 525
EarI CTCTTC 1 cut(s) 525
Eco147I AGGCCT 1 cut(s) 173
Eco32I GATATC 2 cut(s) 453, 466
EcoRV GATATC 2 cut(s) 453, 466
FaeI CATG 6 cut(s) 88, 133, 205, 361, 629, 651
FaqI GGGAC 2 cut(s) 332, 406
FatI CATG 6 cut(s) 84, 129, 201, 357, 625, 647
FbaI TGATCA 1 cut(s) 286
Fnu4HI GCNGC 3 cut(s) 33, 405, 676
FokI GGATG 2 cut(s) 129, 346
Fsp4HI GCNGC 3 cut(s) 33, 405, 676
FspBI CTAG 2 cut(s) 354, 698
GluI GCNGC 3 cut(s) 33, 405, 676
GsuI CTGGAG 1 cut(s) 33
HaeIII GGCC 2 cut(s) 173, 254
HgaI GACGC 1 cut(s) 511
Hin1II CATG 6 cut(s) 88, 133, 205, 361, 629, 651
HinfI GANTC 7 cut(s) 7, 22, 96, 122, 662, 690, 791
Hpy166II GTNNAC 2 cut(s) 11, 232
Hpy188I TCNGA 2 cut(s) 450, 595
Hpy188III TCNNGA 4 cut(s) 85, 202, 284, 545
Hpy8I GTNNAC 2 cut(s) 11, 232
HpyCH4IV ACGT 2 cut(s) 604, 742
HpyCH4V TGCA 9 cut(s) 35, 108, 143, 269, 407, 510, 529, 615, 647
HpyF10VI GCNNNNNNNGC 1 cut(s) 644
HpyF3I CTNAG 1 cut(s) 582
HpySE526I ACGT 2 cut(s) 604, 742
Hsp92II CATG 6 cut(s) 88, 133, 205, 361, 629, 651
Ksp22I TGATCA 1 cut(s) 286
Kzo9I GATC 2 cut(s) 280, 286
LguI GCTCTTC 1 cut(s) 525
LpnPI CCDG 9 cut(s) 63, 236, 429, 437, 496, 515, 537, 558, 617
Lsp1109I GCAGC 3 cut(s) 19, 391, 687
MaeI CTAG 2 cut(s) 354, 698
MaeII ACGT 2 cut(s) 604, 742
MalI GATC 2 cut(s) 282, 288
MboI GATC 2 cut(s) 280, 286
MboII GAAGA 2 cut(s) 16, 512
MfeI CAATTG 1 cut(s) 684
MluCI AATT 3 cut(s) 154, 392, 684
MlyI GAGTC 2 cut(s) 16, 785
MnlI CCTC 6 cut(s) 57, 163, 206, 209, 492, 705
MseI TTAA 2 cut(s) 69, 569
MslI CAYNNNNRTG 2 cut(s) 134, 332
MspA1I CMGCKG 1 cut(s) 32
MspCI CTTAAG 1 cut(s) 68
MunI CAATTG 1 cut(s) 684
MwoI GCNNNNNNNGC 1 cut(s) 644
NdeII GATC 2 cut(s) 280, 286
NlaIII CATG 6 cut(s) 88, 133, 205, 361, 629, 651
PagI TCATGA 2 cut(s) 84, 201
PceI AGGCCT 1 cut(s) 173
PciSI GCTCTTC 1 cut(s) 525
PfeI GAWTC 5 cut(s) 22, 96, 122, 662, 690
PkrI GCNGC 3 cut(s) 34, 406, 677
PleI GAGTC 2 cut(s) 15, 785
PpsI GAGTC 2 cut(s) 15, 785
PsiI TTATAA 1 cut(s) 186
Psp1406I AACGTT 1 cut(s) 604
PstI CTGCAG 2 cut(s) 37, 617
RsaI GTAC 2 cut(s) 75, 488
RsaNI GTAC 2 cut(s) 74, 487
RseI CAYNNNNRTG 2 cut(s) 134, 332
SapI GCTCTTC 1 cut(s) 525
SaqAI TTAA 2 cut(s) 69, 569
SatI GCNGC 3 cut(s) 33, 405, 676
Sau3AI GATC 2 cut(s) 280, 286
SchI GAGTC 2 cut(s) 16, 785
SetI ASST 9 cut(s) 75, 372, 378, 520, 588, 607, 661, 745, 777
SfcI CTRYAG 3 cut(s) 33, 441, 613
SmiMI CAYNNNNRTG 2 cut(s) 134, 332
SmlI CTYRAG 1 cut(s) 68
SmoI CTYRAG 1 cut(s) 68
Sse9I AATT 3 cut(s) 154, 392, 684
SseBI AGGCCT 1 cut(s) 173
SsiI CCGC 1 cut(s) 30
SspI AATATT 1 cut(s) 276
SspMI CTAG 2 cut(s) 354, 698
StuI AGGCCT 1 cut(s) 173
TaiI ACGT 2 cut(s) 607, 745
TasI AATT 3 cut(s) 154, 392, 684
TfiI GAWTC 5 cut(s) 22, 96, 122, 662, 690
Tru1I TTAA 2 cut(s) 69, 569
Tru9I TTAA 2 cut(s) 69, 569
TscAI CASTG 3 cut(s) 42, 423, 531
TseI GCWGC 3 cut(s) 32, 404, 675
TspDTI ATGAA 4 cut(s) 14, 17, 73, 614
TspGWI ACGGA 1 cut(s) 402
TspRI CASTG 3 cut(s) 42, 423, 531
Vha464I CTTAAG 1 cut(s) 68
XcmI CCANNNNNNNNNTGG 1 cut(s) 57
XspI CTAG 2 cut(s) 354, 698
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.