Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0015825

Physical Location & Seq

Genomic Coordinates Reverse (-)

45249674 .. 45254627

Gene Structure 4954 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ57780

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1485 bp

ATGAGGAGTCCACTCTCACAGATTCATACCGCTGCAGTGTTTCCATCTCCAGTTTTTCTATGGAGGCTTAAGGACATTACATTTTCAGGTACTACTTTTCATGATATTGGGATTCAGTTGTTGCAAGTATTGATTGGATGGGATTCTGCCATGAGAATGAGTGCAGATTTGCGTCATTTATTTTTATATGAGGCCTTTTTGTATTATAACCCACCCCTCCTCATGGTGAGGCTTGATTGTTGCTTATCTTTTAATTTCTATTTGTTGCAGACTTTGATGGTTTGGCTTTGGGGAGTGAACTTATGGGTTTTTTCGCAGGCCAACATTGGCTATGCAAAAATATTTGATCTTGATCAAAATCATCTCACTCACAAAGAAGTATGGAAGGTGTCCCTGTATATTGCTGTTGCTATAGTTCTGATATCCCCCTTTGATATCTTTTATTTGTCATCTCGGTACTTCTTATTGAGGACACTGTGCAGGATAGCTCTTCCAGTGCAGGCAAGTTTTCTTTCTTGTAGCTTGTATCCGGACATACTTGGGCACATCTTACCTAAAGAACTAAGTTGGTTAAAGTTTATAAATGAGTTGTTGTCTTTGCCTGTCTTCTATCCTAATGTTGTAGTAATCAAGGTATTGCATAATTTAAGACAAAAGAAAGAAAGAAAGAACAAGAGAAACTTGTTTATCAAATCCTGGAATGATGTGTTTATGGATGCAGGTCTTTACAATCTGCAGGCTATATCATTTCCTGACTTTTTCGTGGCTGAAGTTTTAACTTCTATGTCTAAGGTGTTTTCAGATTTGGAACGTTCAGTCTGCAGAATGGTTCATGGGCTGGTTGCCACTATTGCATGGCTTGAAGCTGATTCAGTTTGTGGCAGCCACTCAATTGGAATCCCTCTAGTGCATGTTTTTCCTTATGTTTGCCGTTTATTTCAATGCCTACGTCAATACAAGGATACAAAAGACAAGACAAACCTTTTCAATGCTTTAAAATATTCGACTGCAGTCCCAGTGATTTTTCTTTCGGCCCTTAAATATCATGTCTTCCCTGATAGGTGGACAAACTTTTATGAGCCGCTTTGGCTTCTGTCTAGTATTGTTAACTCGCTGTATTCATTCTACTGGGACATAGCTCAAGATTGGGACTTGAGTGGCTTCACTCGGATTTTCAAGTTCAGCAGACCAAGTTTAGTTTCCTACTTATTATATGGACAAAAATGGGTATATTTTTGGGCAATAGGAAGCAACCTGATCTTGCGATGTGCATGGACATACAAATTCTCTGCTCATCTTCGTCATAACTACATGGCTGTATTTGCAATCACTGCATTGGAGATTCTTCGACGCTTCCAATGGGTATTCTTTCGAGTAGAAAATGAGTGGAATAAGATTAACAAGTCCAGTTATGATCCCCTACCCATGACTATCATCCAAACAGAAGAAGAGACATTGCTTGACGCTAACAGTCACAGTGTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EXS

Protein Analysis

494

Amino Acids

57.93

Weight (kDa)

8.94

Isoelectric Point (pI)

47.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EXS	PF03124	82 - 133	1.7e-07	EXS family
EXS	PF03124	197 - 463	3.6e-67	EXS family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015825)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G35730
prunus_persica	Prupe.2G153500_v2.0.a1 Prupe.2G153500_v2.0.a1 Prupe.2G153500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0326611 RchiOBHm_Chr1g0352051 RchiOBHm_Chr2g0127371
rosa_laevigata	RLG00000028364
rosa_multiflora	Rmu_sc0002464.1_g000004
rosa_rugosa	Rorug01G0223700
rosa_samantha	Rh1AG238200 Rh1BG208600 Rh1CG222600 Rh1DG235000
rosa_wichuraiana	Rw1G020690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	207, 581
Acc36I	ACCTGC	1 cut(s)	710
AccIII	TCCGGA	1 cut(s)	529
AciI	CCGC	2 cut(s)	30, 1082
AclI	AACGTT	1 cut(s)	811
AclWI	GGATC	1 cut(s)	1409
AcsI	RAATTY	1 cut(s)	1283
AcuI	CTGAAG	1 cut(s)	789
AfaI	GTAC	2 cut(s)	91, 458
AfiI	CCNNNNNNNGG	1 cut(s)	223
AflII	CTTAAG	1 cut(s)	68
AgsI	TTSAA	4 cut(s)	863, 941, 988, 1177
AjnI	CCWGG	1 cut(s)	695
AjuI	GAANNNNNNNTTGG	2 cut(s)	1183, 1215
AluBI	AGCT	4 cut(s)	488, 522, 866, 1139
AluI	AGCT	4 cut(s)	488, 522, 866, 1139
Alw26I	GTCTC	1 cut(s)	1445
AlwI	GGATC	1 cut(s)	1409
Aor13HI	TCCGGA	1 cut(s)	529
AoxI	GGCC	3 cut(s)	192, 318, 1032
ApeKI	GCWGC	2 cut(s)	32, 882
ApoI	RAATTY	1 cut(s)	1283
AspS9I	GGNCC	1 cut(s)	1033
AsuHPI	GGTGA	1 cut(s)	238
BaeGI	GKGCMC	1 cut(s)	546
BbsI	GAAGAC	2 cut(s)	598, 1042
BbvI	GCAGC	2 cut(s)	19, 894
BccI	CCATC	3 cut(s)	52, 132, 271
BceAI	ACGGC	1 cut(s)	915
BciT130I	CCWGG	1 cut(s)	697
BciVI	GTATCC	2 cut(s)	537, 955
BclI	TGATCA	1 cut(s)	352
BcoDI	GTCTC	1 cut(s)	1445
BfaI	CTAG	2 cut(s)	905, 1098
BfmI	CTRYAG	5 cut(s)	33, 411, 734, 820, 1008
BfrI	CTTAAG	1 cut(s)	68
BfuAI	ACCTGC	1 cut(s)	710
BfuI	GTATCC	2 cut(s)	537, 955
BglI	GCCNNNNNGGC	1 cut(s)	1087
BisI	GCNGC	3 cut(s)	33, 883, 1082
BlsI	GCNGC	3 cut(s)	34, 884, 1083
Bme1390I	CCNGG	1 cut(s)	697
BmgT120I	GGNCC	1 cut(s)	1033
BmrFI	CCNGG	1 cut(s)	697
BmrI	ACTGGG	2 cut(s)	1010, 1138
BmsI	GCATC	1 cut(s)	706
BmuI	ACTGGG	2 cut(s)	1010, 1138
BoxI	GACNNNNGTC	1 cut(s)	1010
BpiI	GAAGAC	2 cut(s)	598, 1042
BpmI	CTGGAG	1 cut(s)	33
BpuEI	CTTGAG	2 cut(s)	1125, 1174
BsaBI	GATNNNNATC	2 cut(s)	351, 357
BsaWI	WCCGGW	1 cut(s)	529
Bsc4I	CCNNNNNNNGG	1 cut(s)	223
Bse1I	ACTGG	5 cut(s)	50, 494, 1016, 1133, 1407
Bse3DI	GCAATG	1 cut(s)	1454
Bse8I	GATNNNNATC	2 cut(s)	351, 357
BseAI	TCCGGA	1 cut(s)	529
BseBI	CCWGG	1 cut(s)	697
BseGI	GGATG	3 cut(s)	143, 721, 1434
BseJI	GATNNNNATC	2 cut(s)	351, 357
BseLI	CCNNNNNNNGG	1 cut(s)	223
BseMI	GCAATG	1 cut(s)	1454
BseNI	ACTGG	5 cut(s)	50, 494, 1016, 1133, 1407
BseRI	GAGGAG	2 cut(s)	19, 209
BseSI	GKGCMC	1 cut(s)	546
BseXI	GCAGC	2 cut(s)	19, 894
BsgI	GTGCAG	3 cut(s)	183, 499, 518
BshFI	GGCC	3 cut(s)	194, 320, 1034
BsiSI	CCGG	1 cut(s)	530
BslFI	GGGAC	4 cut(s)	376, 998, 1145, 1163
BslI	CCNNNNNNNGG	1 cut(s)	223
BsmAI	GTCTC	1 cut(s)	1445
BsmFI	GGGAC	4 cut(s)	376, 998, 1145, 1163
BsnI	GGCC	3 cut(s)	194, 320, 1034
Bsp1286I	GDGCHC	1 cut(s)	546
Bsp13I	TCCGGA	1 cut(s)	529
Bsp143I	GATC	4 cut(s)	346, 352, 1257, 1414
BspACI	CCGC	2 cut(s)	30, 1082
BspANI	GGCC	3 cut(s)	194, 320, 1034
BspEI	TCCGGA	1 cut(s)	529
BspHI	TCATGA	1 cut(s)	100
BspMAI	CTGCAG	4 cut(s)	37, 738, 824, 1012
BspMI	ACCTGC	1 cut(s)	710
BspPI	GGATC	1 cut(s)	1409
BspQI	GCTCTTC	1 cut(s)	495
BspTI	CTTAAG	1 cut(s)	68
BsrDI	GCAATG	1 cut(s)	1454
BsrI	ACTGG	5 cut(s)	50, 494, 1016, 1133, 1407
BssMI	GATC	4 cut(s)	346, 352, 1257, 1414
Bst2UI	CCWGG	1 cut(s)	697
Bst4CI	ACNGT	3 cut(s)	477, 1472, 1478
Bst6I	CTCTTC	2 cut(s)	495, 1443
BstAFI	CTTAAG	1 cut(s)	68
BstAPI	GCANNNNNTGC	1 cut(s)	1331
BstC8I	GCNNGC	3 cut(s)	318, 501, 738
BstDEI	CTNAG	2 cut(s)	563, 789
BstF5I	GGATG	3 cut(s)	143, 721, 1434
BstKTI	GATC	4 cut(s)	349, 355, 1260, 1417
BstMAI	GTCTC	1 cut(s)	1445
BstMBI	GATC	4 cut(s)	346, 352, 1257, 1414
BstMWI	GCNNNNNNNGC	4 cut(s)	851, 1087, 1322, 1331
BstNI	CCWGG	1 cut(s)	697
BstNSI	RCATGY	1 cut(s)	914
BstPAI	GACNNNNGTC	1 cut(s)	1010
BstSCI	CCNGG	1 cut(s)	695
BstSFI	CTRYAG	5 cut(s)	33, 411, 734, 820, 1008
BstSLI	GKGCMC	1 cut(s)	546
BstV1I	GCAGC	2 cut(s)	19, 894
BstV2I	GAAGAC	2 cut(s)	598, 1042
BstXI	CCANNNNNNTGG	1 cut(s)	893
BsuI	GTATCC	2 cut(s)	537, 955
BsuRI	GGCC	3 cut(s)	194, 320, 1034
BtgZI	GCGATG	1 cut(s)	1279
BtsCI	GGATG	3 cut(s)	143, 721, 1434
BtsI	GCAGTG	2 cut(s)	42, 1329
BtsIMutI	CAGTG	6 cut(s)	42, 473, 501, 1023, 1329, 1483
BveI	ACCTGC	1 cut(s)	710
Cac8I	GCNNGC	3 cut(s)	318, 501, 738
CciI	TCATGA	1 cut(s)	100
Cfr13I	GGNCC	1 cut(s)	1033
CseI	GACGC	3 cut(s)	161, 1359, 1472
Csp6I	GTAC	2 cut(s)	90, 457
CviQI	GTAC	2 cut(s)	90, 457
DdeI	CTNAG	2 cut(s)	563, 789
DpnI	GATC	4 cut(s)	348, 354, 1259, 1416
DpnII	GATC	4 cut(s)	346, 352, 1257, 1414
DraI	TTTAAA	1 cut(s)	996
Eam1104I	CTCTTC	2 cut(s)	495, 1443
EarI	CTCTTC	2 cut(s)	495, 1443
Eco147I	AGGCCT	1 cut(s)	194
Eco32I	GATATC	2 cut(s)	423, 436
Eco57I	CTGAAG	1 cut(s)	789
EcoRII	CCWGG	1 cut(s)	695
EcoRV	GATATC	2 cut(s)	423, 436
FalI	AAGNNNNNCTT	2 cut(s)	665, 697
FaqI	GGGAC	4 cut(s)	376, 998, 1145, 1163
FbaI	TGATCA	1 cut(s)	352
Fnu4HI	GCNGC	3 cut(s)	33, 883, 1082
FokI	GGATG	3 cut(s)	150, 728, 1421
Fsp4HI	GCNGC	3 cut(s)	33, 883, 1082
FspBI	CTAG	2 cut(s)	905, 1098
GluI	GCNGC	3 cut(s)	33, 883, 1082
GsuI	CTGGAG	1 cut(s)	33
HaeIII	GGCC	3 cut(s)	194, 320, 1034
HapII	CCGG	1 cut(s)	530
HgaI	GACGC	3 cut(s)	161, 1359, 1472
HincII	GTYRAC	1 cut(s)	1108
HindII	GTYRAC	1 cut(s)	1108
HinfI	GANTC	7 cut(s)	7, 22, 112, 143, 869, 897, 1342
HpaI	GTTAAC	1 cut(s)	1108
HpaII	CCGG	1 cut(s)	530
HphI	GGTGA	1 cut(s)	238
Hpy166II	GTNNAC	4 cut(s)	11, 298, 1065, 1108
Hpy188I	TCNGA	3 cut(s)	420, 802, 1170
Hpy188III	TCNNGA	5 cut(s)	101, 350, 530, 752, 1142
Hpy8I	GTNNAC	4 cut(s)	11, 298, 1065, 1108
Hpy99I	CGWCG	1 cut(s)	1353
HpyAV	CCTTC	1 cut(s)	379
HpyCH4III	ACNGT	3 cut(s)	477, 1472, 1478
HpyCH4IV	ACGT	2 cut(s)	811, 949
HpyF10VI	GCNNNNNNNGC	4 cut(s)	851, 1087, 1322, 1331
HpyF3I	CTNAG	2 cut(s)	563, 789
HpySE526I	ACGT	2 cut(s)	811, 949
Kpn2I	TCCGGA	1 cut(s)	529
Ksp22I	TGATCA	1 cut(s)	352
KspAI	GTTAAC	1 cut(s)	1108
Kzo9I	GATC	4 cut(s)	346, 352, 1257, 1414
LguI	GCTCTTC	1 cut(s)	495
Lsp1109I	GCAGC	2 cut(s)	19, 894
LweI	GCATC	1 cut(s)	706
MaeI	CTAG	2 cut(s)	905, 1098
MaeII	ACGT	2 cut(s)	811, 949
MaeIII	GTNAC	1 cut(s)	1472
MalI	GATC	4 cut(s)	348, 354, 1259, 1416
MboI	GATC	4 cut(s)	346, 352, 1257, 1414
MboII	GAAGA	7 cut(s)	482, 598, 1042, 1289, 1337, 1457, 1460
MfeI	CAATTG	1 cut(s)	891
MhlI	GDGCHC	1 cut(s)	546
MluCI	AATT	4 cut(s)	253, 643, 891, 1283
MlyI	GAGTC	1 cut(s)	16
MnlI	CCTC	7 cut(s)	57, 184, 222, 227, 230, 462, 912
MroI	TCCGGA	1 cut(s)	529
MseI	TTAA	9 cut(s)	69, 252, 572, 647, 776, 995, 1038, 1107, 1398
MslI	CAYNNNNRTG	1 cut(s)	155
MspA1I	CMGCKG	1 cut(s)	32
MspCI	CTTAAG	1 cut(s)	68
MspI	CCGG	1 cut(s)	530
MspR9I	CCNGG	1 cut(s)	697
MunI	CAATTG	1 cut(s)	891
MvaI	CCWGG	1 cut(s)	697
MwoI	GCNNNNNNNGC	4 cut(s)	851, 1087, 1322, 1331
NdeII	GATC	4 cut(s)	346, 352, 1257, 1414
NmuCI	GTSAC	1 cut(s)	1472
NspI	RCATGY	1 cut(s)	914
PagI	TCATGA	1 cut(s)	100
PceI	AGGCCT	1 cut(s)	194
PciSI	GCTCTTC	1 cut(s)	495
PfeI	GAWTC	6 cut(s)	22, 112, 143, 869, 897, 1342
PfoI	TCCNGGA	1 cut(s)	695
PkrI	GCNGC	3 cut(s)	34, 884, 1083
PleI	GAGTC	1 cut(s)	15
PpsI	GAGTC	1 cut(s)	15
PshAI	GACNNNNGTC	1 cut(s)	1010
PsiI	TTATAA	2 cut(s)	207, 581
Psp1406I	AACGTT	1 cut(s)	811
Psp6I	CCWGG	1 cut(s)	695
PspGI	CCWGG	1 cut(s)	695
PspPI	GGNCC	1 cut(s)	1033
PstI	CTGCAG	4 cut(s)	37, 738, 824, 1012
RsaI	GTAC	2 cut(s)	91, 458
RsaNI	GTAC	2 cut(s)	90, 457
RseI	CAYNNNNRTG	1 cut(s)	155
SapI	GCTCTTC	1 cut(s)	495
SaqAI	TTAA	9 cut(s)	69, 252, 572, 647, 776, 995, 1038, 1107, 1398
SatI	GCNGC	3 cut(s)	33, 883, 1082
Sau3AI	GATC	4 cut(s)	346, 352, 1257, 1414
Sau96I	GGNCC	1 cut(s)	1033
SchI	GAGTC	1 cut(s)	16
ScrFI	CCNGG	1 cut(s)	697
SduI	GDGCHC	1 cut(s)	546
SfaNI	GCATC	1 cut(s)	706
SfcI	CTRYAG	5 cut(s)	33, 411, 734, 820, 1008
SmiMI	CAYNNNNRTG	1 cut(s)	155
SmlI	CTYRAG	3 cut(s)	68, 1140, 1153
SmoI	CTYRAG	3 cut(s)	68, 1140, 1153
Sse9I	AATT	4 cut(s)	253, 643, 891, 1283
SseBI	AGGCCT	1 cut(s)	194
SsiI	CCGC	2 cut(s)	30, 1082
SspI	AATATT	2 cut(s)	342, 1001
SspMI	CTAG	2 cut(s)	905, 1098
StuI	AGGCCT	1 cut(s)	194
StyD4I	CCNGG	1 cut(s)	695
TaaI	ACNGT	3 cut(s)	477, 1472, 1478
TaiI	ACGT	2 cut(s)	814, 952
TaqI	TCGA	3 cut(s)	1004, 1348, 1372
TasI	AATT	4 cut(s)	253, 643, 891, 1283
TauI	GCSGC	1 cut(s)	1084
TfiI	GAWTC	6 cut(s)	22, 112, 143, 869, 897, 1342
Tru1I	TTAA	9 cut(s)	69, 252, 572, 647, 776, 995, 1038, 1107, 1398
Tru9I	TTAA	9 cut(s)	69, 252, 572, 647, 776, 995, 1038, 1107, 1398
TscAI	CASTG	6 cut(s)	42, 480, 501, 1023, 1336, 1483
TseFI	GTSAC	1 cut(s)	1472
TseI	GCWGC	2 cut(s)	32, 882
Tsp45I	GTSAC	1 cut(s)	1472
TspDTI	ATGAA	4 cut(s)	14, 89, 821, 1110
TspRI	CASTG	6 cut(s)	42, 480, 501, 1023, 1336, 1483
Vha464I	CTTAAG	1 cut(s)	68
XapI	RAATTY	1 cut(s)	1283
XceI	RCATGY	1 cut(s)	914
XcmI	CCANNNNNNNNNTGG	1 cut(s)	57
XspI	CTAG	2 cut(s)	905, 1098

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.