Rw1G020690

SPX and EXS domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0015825
Physical Location & Seq
Reverse (-)
44352956 .. 44357868
4913 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G020690.1

Sequence Viewer

Length: 1254 bp
ATGAAGAGTCCACTCTCACAGATTCATACCGCTGCAGTGTTTCCTTCTCCAGTTTTTCTATGGAGGGTTAAGGTACTACTTTTCATGATATGGGGGTTCAGTTGTTGCAAGATTGGATGGGATTCTGCCATGAGAATGAGTGCAGATTTGCGTAATTTATTCTTATATGAGGCCTTTTTGTATTATAACCCACCCCTCCTCATGACTTTGATGGTTTGGCTTTGGGGAGTGAACTTATGGGTTTTTTCACAGGCCAACATTGGCTATGCAAAAATATTTGATCTTGATCAAAATCATCTCACTCACAAAGAAGTATGGAAGTGTAGCACTTGGATGACCATCATTGTCCCTACTAGCATGACAGCATATCTTTACCTTTACTCACATGGAAAATTATTATTGGCTGCATTACTACCAGTGTCCCTGTATATTGCTGTTGCTATAGTTCTGATATCCCCCTTTGATATCTTTTATTTGTCATCTCGGTACTTCTTATTGAGGACACTGAGCAGGATAGCTCTTCCAGTGCAGGCTATATCATTTCCTGACTTTTTGGTGGCTGATATTTTAACTTCTATGTCTAAGGTGTTTTCAGATTTGGAACGTTCAGTCTGCAGAATGGTTCATGGGCTGGTTGCCACTATTGCATGGCTTGAAGCTGATTCAGTTTGTGGCAGCCACTCAATTGGAATCCCTCTAGTGCTTGTTTTTCCTTATGTTTGCCGTTTATTTCAATGCCTACGTCAATACAAGGATACAAAAGACAAGACAGACCTTTTCAATGCTTTAAAATATTCGACTGCAGTCCCAGTGATTTTTCTTTCAGCCCTTAAATATCATGCCCCTGATAGGTGGACAAACTTTTATGAGCCGCTTTGGCTTCTGTCTAGTATTGTTAACTCGCTGTATTCATTCTACTGGGACATAGCTCAAGATTGGGACTTGAGTGGCTTCACTCGGATTTTCAAGTTCAGCAGACCAAGTTTAGTTTCCCACTTATTATATGGACAAAAATGGGTATATTTTTGGGCAATAGGAAGCAACCTGATCTTGCGATGTGCGTGGACATACAAATTCTCTGCTCATCTTCGTCATAACTACATGACTGTATTTGCAATCACTGCATTGGAGATTCTTCGACGCTTCCAATGGGTATTCTTTCGAGTAGAAAATGAGTGGAATAAGATTAACAAGTCCAGTTATGACCCCCTACCCATGACTATCATCCAAACAGAAGAAAGAGACATTGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
EXS

Protein Analysis

417

Amino Acids

48.67

Weight (kDa)

9.03

Isoelectric Point (pI)

42.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EXS PF03124 59 - 393 1.6e-94 EXS family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 186
AciI CCGC 2 cut(s) 30, 872
AclI AACGTT 1 cut(s) 604
AcsI RAATTY 1 cut(s) 1073
AfaI GTAC 2 cut(s) 75, 488
AfiI CCNNNNNNNGG 1 cut(s) 849
AgsI TTSAA 4 cut(s) 656, 734, 781, 967
AjuI GAANNNNNNNTTGG 2 cut(s) 973, 1005
AluBI AGCT 3 cut(s) 518, 659, 929
AluI AGCT 3 cut(s) 518, 659, 929
Alw26I GTCTC 1 cut(s) 1236
AoxI GGCC 2 cut(s) 171, 252
ApeKI GCWGC 3 cut(s) 32, 404, 675
ApoI RAATTY 1 cut(s) 1073
BbvI GCAGC 3 cut(s) 19, 391, 687
BccI CCATC 3 cut(s) 111, 205, 347
BceAI ACGGC 1 cut(s) 708
BciVI GTATCC 1 cut(s) 748
BclI TGATCA 1 cut(s) 286
BcoDI GTCTC 1 cut(s) 1236
BfaI CTAG 3 cut(s) 354, 698, 888
BfmI CTRYAG 4 cut(s) 33, 441, 613, 801
BfuI GTATCC 1 cut(s) 748
BglI GCCNNNNNGGC 1 cut(s) 877
BisI GCNGC 4 cut(s) 33, 405, 676, 872
BlsI GCNGC 4 cut(s) 34, 406, 677, 873
BmrI ACTGGG 2 cut(s) 803, 928
BmuI ACTGGG 2 cut(s) 803, 928
BoxI GACNNNNGTC 1 cut(s) 803
BpmI CTGGAG 1 cut(s) 33
BpuEI CTTGAG 2 cut(s) 915, 964
BsaBI GATNNNNATC 3 cut(s) 285, 291, 338
Bsc4I CCNNNNNNNGG 1 cut(s) 849
Bse1I ACTGG 6 cut(s) 50, 416, 524, 809, 923, 1197
Bse3DI GCAATG 1 cut(s) 1245
Bse8I GATNNNNATC 3 cut(s) 285, 291, 338
BseGI GGATG 3 cut(s) 122, 339, 1224
BseJI GATNNNNATC 3 cut(s) 285, 291, 338
BseLI CCNNNNNNNGG 1 cut(s) 849
BseMI GCAATG 1 cut(s) 1245
BseMII CTCAG 1 cut(s) 497
BseNI ACTGG 6 cut(s) 50, 416, 524, 809, 923, 1197
BseRI GAGGAG 1 cut(s) 188
BseXI GCAGC 3 cut(s) 19, 391, 687
BsgI GTGCAG 2 cut(s) 162, 548
BshFI GGCC 2 cut(s) 173, 254
BslFI GGGAC 5 cut(s) 332, 406, 791, 935, 953
BslI CCNNNNNNNGG 1 cut(s) 849
BsmAI GTCTC 1 cut(s) 1236
BsmFI GGGAC 5 cut(s) 332, 406, 791, 935, 953
BsnI GGCC 2 cut(s) 173, 254
Bsp143I GATC 3 cut(s) 280, 286, 1047
BspACI CCGC 2 cut(s) 30, 872
BspANI GGCC 2 cut(s) 173, 254
BspCNI CTCAG 1 cut(s) 498
BspHI TCATGA 2 cut(s) 84, 201
BspMAI CTGCAG 3 cut(s) 37, 617, 805
BspQI GCTCTTC 1 cut(s) 525
BsrDI GCAATG 1 cut(s) 1245
BsrI ACTGG 6 cut(s) 50, 416, 524, 809, 923, 1197
BssMI GATC 3 cut(s) 280, 286, 1047
Bst4CI ACNGT 1 cut(s) 1108
Bst6I CTCTTC 1 cut(s) 525
BstAPI GCANNNNNTGC 1 cut(s) 1121
BstC8I GCNNGC 1 cut(s) 531
BstDEI CTNAG 2 cut(s) 506, 582
BstF5I GGATG 3 cut(s) 122, 339, 1224
BstKTI GATC 3 cut(s) 283, 289, 1050
BstMAI GTCTC 1 cut(s) 1236
BstMBI GATC 3 cut(s) 280, 286, 1047
BstMWI GCNNNNNNNGC 3 cut(s) 644, 877, 1121
BstPAI GACNNNNGTC 1 cut(s) 803
BstSFI CTRYAG 4 cut(s) 33, 441, 613, 801
BstV1I GCAGC 3 cut(s) 19, 391, 687
BstXI CCANNNNNNTGG 1 cut(s) 686
BsuI GTATCC 1 cut(s) 748
BsuRI GGCC 2 cut(s) 173, 254
BtgZI GCGATG 1 cut(s) 1069
BtsCI GGATG 3 cut(s) 122, 339, 1224
BtsI GCAGTG 2 cut(s) 42, 1119
BtsIMutI CAGTG 6 cut(s) 42, 423, 503, 531, 816, 1119
Cac8I GCNNGC 1 cut(s) 531
CciI TCATGA 2 cut(s) 84, 201
CseI GACGC 1 cut(s) 1149
Csp6I GTAC 2 cut(s) 74, 487
CviQI GTAC 2 cut(s) 74, 487
DdeI CTNAG 2 cut(s) 506, 582
DpnI GATC 3 cut(s) 282, 288, 1049
DpnII GATC 3 cut(s) 280, 286, 1047
DraI TTTAAA 1 cut(s) 789
Eam1104I CTCTTC 1 cut(s) 525
EarI CTCTTC 1 cut(s) 525
Eco147I AGGCCT 1 cut(s) 173
Eco32I GATATC 2 cut(s) 453, 466
EcoRV GATATC 2 cut(s) 453, 466
FaqI GGGAC 5 cut(s) 332, 406, 791, 935, 953
FbaI TGATCA 1 cut(s) 286
Fnu4HI GCNGC 4 cut(s) 33, 405, 676, 872
FokI GGATG 3 cut(s) 129, 346, 1211
Fsp4HI GCNGC 4 cut(s) 33, 405, 676, 872
FspBI CTAG 3 cut(s) 354, 698, 888
GluI GCNGC 4 cut(s) 33, 405, 676, 872
GsuI CTGGAG 1 cut(s) 33
HaeIII GGCC 2 cut(s) 173, 254
HgaI GACGC 1 cut(s) 1149
HincII GTYRAC 1 cut(s) 898
HindII GTYRAC 1 cut(s) 898
HinfI GANTC 6 cut(s) 7, 22, 122, 662, 690, 1132
HpaI GTTAAC 1 cut(s) 898
Hpy166II GTNNAC 5 cut(s) 11, 232, 855, 898, 1065
Hpy188I TCNGA 3 cut(s) 450, 595, 960
Hpy188III TCNNGA 5 cut(s) 85, 202, 284, 545, 932
Hpy8I GTNNAC 5 cut(s) 11, 232, 855, 898, 1065
Hpy99I CGWCG 1 cut(s) 1143
HpyAV CCTTC 1 cut(s) 54
HpyCH4III ACNGT 1 cut(s) 1108
HpyCH4IV ACGT 2 cut(s) 604, 742
HpyF10VI GCNNNNNNNGC 3 cut(s) 644, 877, 1121
HpyF3I CTNAG 2 cut(s) 506, 582
HpySE526I ACGT 2 cut(s) 604, 742
Ksp22I TGATCA 1 cut(s) 286
KspAI GTTAAC 1 cut(s) 898
Kzo9I GATC 3 cut(s) 280, 286, 1047
LguI GCTCTTC 1 cut(s) 525
Lsp1109I GCAGC 3 cut(s) 19, 391, 687
MaeI CTAG 3 cut(s) 354, 698, 888
MaeII ACGT 2 cut(s) 604, 742
MalI GATC 3 cut(s) 282, 288, 1049
MboI GATC 3 cut(s) 280, 286, 1047
MboII GAAGA 5 cut(s) 16, 512, 1079, 1127, 1247
MfeI CAATTG 1 cut(s) 684
MluCI AATT 4 cut(s) 154, 392, 684, 1073
MlyI GAGTC 1 cut(s) 16
MnlI CCTC 6 cut(s) 57, 163, 206, 209, 492, 705
MseI TTAA 6 cut(s) 69, 569, 788, 831, 897, 1188
MslI CAYNNNNRTG 2 cut(s) 134, 332
MspA1I CMGCKG 1 cut(s) 32
MunI CAATTG 1 cut(s) 684
MwoI GCNNNNNNNGC 3 cut(s) 644, 877, 1121
NdeII GATC 3 cut(s) 280, 286, 1047
PagI TCATGA 2 cut(s) 84, 201
PceI AGGCCT 1 cut(s) 173
PciSI GCTCTTC 1 cut(s) 525
PfeI GAWTC 5 cut(s) 22, 122, 662, 690, 1132
PkrI GCNGC 4 cut(s) 34, 406, 677, 873
PleI GAGTC 1 cut(s) 15
PpsI GAGTC 1 cut(s) 15
PshAI GACNNNNGTC 1 cut(s) 803
PsiI TTATAA 1 cut(s) 186
Psp1406I AACGTT 1 cut(s) 604
PstI CTGCAG 3 cut(s) 37, 617, 805
RsaI GTAC 2 cut(s) 75, 488
RsaNI GTAC 2 cut(s) 74, 487
RseI CAYNNNNRTG 2 cut(s) 134, 332
SapI GCTCTTC 1 cut(s) 525
SaqAI TTAA 6 cut(s) 69, 569, 788, 831, 897, 1188
SatI GCNGC 4 cut(s) 33, 405, 676, 872
Sau3AI GATC 3 cut(s) 280, 286, 1047
SchI GAGTC 1 cut(s) 16
SfcI CTRYAG 4 cut(s) 33, 441, 613, 801
SmiMI CAYNNNNRTG 2 cut(s) 134, 332
SmlI CTYRAG 2 cut(s) 930, 943
SmoI CTYRAG 2 cut(s) 930, 943
Sse9I AATT 4 cut(s) 154, 392, 684, 1073
SseBI AGGCCT 1 cut(s) 173
SsiI CCGC 2 cut(s) 30, 872
SspI AATATT 2 cut(s) 276, 794
SspMI CTAG 3 cut(s) 354, 698, 888
StuI AGGCCT 1 cut(s) 173
TaaI ACNGT 1 cut(s) 1108
TaiI ACGT 2 cut(s) 607, 745
TaqI TCGA 3 cut(s) 797, 1138, 1162
TasI AATT 4 cut(s) 154, 392, 684, 1073
TauI GCSGC 1 cut(s) 874
TfiI GAWTC 5 cut(s) 22, 122, 662, 690, 1132
Tru1I TTAA 6 cut(s) 69, 569, 788, 831, 897, 1188
Tru9I TTAA 6 cut(s) 69, 569, 788, 831, 897, 1188
TscAI CASTG 6 cut(s) 42, 423, 510, 531, 816, 1126
TseI GCWGC 3 cut(s) 32, 404, 675
TspDTI ATGAA 5 cut(s) 14, 17, 73, 614, 900
TspRI CASTG 6 cut(s) 42, 423, 510, 531, 816, 1126
XapI RAATTY 1 cut(s) 1073
XcmI CCANNNNNNNNNTGG 2 cut(s) 57, 1001
XspI CTAG 3 cut(s) 354, 698, 888
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.