Prupe.2G159900_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
OG0011874
Physical Location & Seq
Forward (+)
21210789 .. 21213934
3146 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G159900.3

Sequence Viewer

Length: 255 bp
ATGGGAGGAGGTGAACATGCACACGGAGATGGGGCCCACGGAGACTTCAGGGCCAAGGTGTGGAGCATGAGTGGGGGTCCGTACTGTAGGCCCAAGCACTGGAAGCGCAACACCGCCATCGCCATGGCCGGCATCTTCCTTGTCTGCATTCCTATCGCCATGAAATCTGCCGAGCTCGAGCAACGGCCACATAATCCTGTACGCCCGATCCCATCACAACTCTGGTGCAAGAACTTTGGAAACAAAGACTACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

85

Amino Acids

9.33

Weight (kDa)

9.45

Isoelectric Point (pI)

35.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 60, 99
AciI CCGC 1 cut(s) 114
AclWI GGATC 1 cut(s) 202
AcoI YGGCCR 2 cut(s) 126, 185
AcuI CTGAAG 1 cut(s) 31
AfaI GTAC 2 cut(s) 83, 201
AfiI CCNNNNNNNGG 2 cut(s) 60, 99
AluBI AGCT 1 cut(s) 175
AluI AGCT 1 cut(s) 175
Alw21I GWGCWC 1 cut(s) 177
Alw26I GTCTC 1 cut(s) 36
AlwI GGATC 1 cut(s) 202
Ama87I CYCGRG 1 cut(s) 176
AoxI GGCC 5 cut(s) 33, 51, 89, 126, 185
ApaI GGGCCC 1 cut(s) 37
AspLEI GCGC 1 cut(s) 108
AspS9I GGNCC 5 cut(s) 33, 34, 51, 77, 90
AsuHPI GGTGA 1 cut(s) 23
AvaI CYCGRG 1 cut(s) 176
AvaII GGWCC 1 cut(s) 77
BaeGI GKGCMC 1 cut(s) 37
BanII GRGCYC 2 cut(s) 37, 177
Bbv12I GWGCWC 1 cut(s) 177
BccI CCATC 3 cut(s) 23, 125, 220
BceAI ACGGC 1 cut(s) 200
BcgI CGANNNNNNTGC 2 cut(s) 136, 170
BcoDI GTCTC 1 cut(s) 36
BfmI CTRYAG 1 cut(s) 85
Bme18I GGWCC 1 cut(s) 77
BmeT110I CYCGRG 1 cut(s) 176
BmgT120I GGNCC 5 cut(s) 33, 34, 51, 77, 90
BmiI GGNNCC 3 cut(s) 34, 35, 78
BmsI GCATC 1 cut(s) 141
BsaJI CCNNGG 3 cut(s) 37, 54, 123
BsaXI ACNNNNNCTCC 2 cut(s) 55, 85
Bsc4I CCNNNNNNNGG 2 cut(s) 60, 99
Bse118I RCCGGY 1 cut(s) 128
Bse1I ACTGG 1 cut(s) 104
BseDI CCNNGG 3 cut(s) 37, 54, 123
BseLI CCNNNNNNNGG 2 cut(s) 60, 99
BseNI ACTGG 1 cut(s) 104
BseRI GAGGAG 1 cut(s) 21
BseSI GKGCMC 1 cut(s) 37
BshFI GGCC 5 cut(s) 35, 53, 91, 128, 187
BsiHKAI GWGCWC 1 cut(s) 177
BsiHKCI CYCGRG 1 cut(s) 176
BsiSI CCGG 1 cut(s) 129
BslI CCNNNNNNNGG 2 cut(s) 60, 99
BsmAI GTCTC 1 cut(s) 36
BsmI GAATGC 1 cut(s) 147
BsnI GGCC 5 cut(s) 35, 53, 91, 128, 187
BsoBI CYCGRG 1 cut(s) 176
Bsp120I GGGCCC 1 cut(s) 33
Bsp1286I GDGCHC 2 cut(s) 37, 177
Bsp143I GATC 1 cut(s) 207
Bsp19I CCATGG 1 cut(s) 123
BspACI CCGC 1 cut(s) 114
BspANI GGCC 5 cut(s) 35, 53, 91, 128, 187
BspLI GGNNCC 3 cut(s) 34, 35, 78
BspPI GGATC 1 cut(s) 202
BsrFI RCCGGY 1 cut(s) 128
BsrI ACTGG 1 cut(s) 104
BssAI RCCGGY 1 cut(s) 128
BssECI CCNNGG 3 cut(s) 37, 54, 123
BssMI GATC 1 cut(s) 207
BssT1I CCWWGG 2 cut(s) 54, 123
Bst4CI ACNGT 1 cut(s) 86
BstC8I GCNNGC 1 cut(s) 130
BstDSI CCRYGG 2 cut(s) 37, 123
BstHHI GCGC 1 cut(s) 108
BstKTI GATC 1 cut(s) 210
BstMAI GTCTC 1 cut(s) 36
BstMBI GATC 1 cut(s) 207
BstMWI GCNNNNNNNGC 1 cut(s) 103
BstNSI RCATGY 1 cut(s) 20
BstSFI CTRYAG 1 cut(s) 85
BstSLI GKGCMC 1 cut(s) 37
BstXI CCANNNNNNTGG 1 cut(s) 124
BsuRI GGCC 5 cut(s) 35, 53, 91, 128, 187
BtgI CCRYGG 2 cut(s) 37, 123
BtgZI GCGATG 1 cut(s) 103
BtsIMutI CAGTG 1 cut(s) 97
Cac8I GCNNGC 1 cut(s) 130
CfoI GCGC 1 cut(s) 108
Cfr10I RCCGGY 1 cut(s) 128
Cfr13I GGNCC 5 cut(s) 33, 34, 51, 77, 90
Csp6I GTAC 2 cut(s) 82, 200
CviAII CATG 4 cut(s) 17, 67, 124, 160
CviJI RGCY 6 cut(s) 35, 53, 91, 128, 175, 187
CviKI_1 RGCY 6 cut(s) 35, 53, 91, 128, 175, 187
CviQI GTAC 2 cut(s) 82, 200
DpnI GATC 1 cut(s) 209
DpnII GATC 1 cut(s) 207
EaeI YGGCCR 2 cut(s) 126, 185
Ecl136II GAGCTC 1 cut(s) 175
Eco130I CCWWGG 2 cut(s) 54, 123
Eco24I GRGCYC 2 cut(s) 37, 177
Eco47I GGWCC 1 cut(s) 77
Eco53kI GAGCTC 1 cut(s) 175
Eco57I CTGAAG 1 cut(s) 31
Eco88I CYCGRG 1 cut(s) 176
EcoICRI GAGCTC 1 cut(s) 175
EcoO109I RGGNCCY 1 cut(s) 33
EcoT14I CCWWGG 2 cut(s) 54, 123
EcoT38I GRGCYC 2 cut(s) 37, 177
ErhI CCWWGG 2 cut(s) 54, 123
FaeI CATG 4 cut(s) 20, 70, 127, 163
FaiI YATR 5 cut(s) 18, 68, 125, 161, 192
FatI CATG 4 cut(s) 16, 66, 123, 159
FriOI GRGCYC 2 cut(s) 37, 177
GlaI GCGC 1 cut(s) 107
HaeIII GGCC 5 cut(s) 35, 53, 91, 128, 187
HapII CCGG 1 cut(s) 129
HhaI GCGC 1 cut(s) 108
Hin1II CATG 4 cut(s) 20, 70, 127, 163
Hin6I GCGC 1 cut(s) 106
HinP1I GCGC 1 cut(s) 106
HpaII CCGG 1 cut(s) 129
HphI GGTGA 1 cut(s) 23
Hpy166II GTNNAC 1 cut(s) 14
Hpy8I GTNNAC 1 cut(s) 14
HpyCH4III ACNGT 1 cut(s) 86
HpyCH4V TGCA 3 cut(s) 20, 147, 228
HpyF10VI GCNNNNNNNGC 1 cut(s) 103
Hsp92II CATG 4 cut(s) 20, 70, 127, 163
HspAI GCGC 1 cut(s) 106
KroI GCCGGC 1 cut(s) 128
KroNI GCCGGC 1 cut(s) 130
Kzo9I GATC 1 cut(s) 207
LmnI GCTCC 1 cut(s) 63
LpnPI CCDG 5 cut(s) 34, 85, 142, 208, 210
LweI GCATC 1 cut(s) 141
MalI GATC 1 cut(s) 209
MboI GATC 1 cut(s) 207
MboII GAAGA 1 cut(s) 127
MhlI GDGCHC 2 cut(s) 37, 177
MroNI GCCGGC 1 cut(s) 128
MslI CAYNNNNRTG 2 cut(s) 27, 122
MspI CCGG 1 cut(s) 129
Mva1269I GAATGC 1 cut(s) 147
MwoI GCNNNNNNNGC 1 cut(s) 103
NaeI GCCGGC 1 cut(s) 130
NcoI CCATGG 1 cut(s) 123
NdeII GATC 1 cut(s) 207
NgoMIV GCCGGC 1 cut(s) 128
NlaIII CATG 4 cut(s) 20, 70, 127, 163
NlaIV GGNNCC 3 cut(s) 34, 35, 78
NmeAIII GCCGAG 1 cut(s) 196
NspI RCATGY 1 cut(s) 20
PaeR7I CTCGAG 1 cut(s) 176
PctI GAATGC 1 cut(s) 147
PdiI GCCGGC 1 cut(s) 130
PflMI CCANNNNNTGG 2 cut(s) 60, 99
Psp124BI GAGCTC 1 cut(s) 177
PspN4I GGNNCC 3 cut(s) 34, 35, 78
PspOMI GGGCCC 1 cut(s) 33
PspPI GGNCC 5 cut(s) 33, 34, 51, 77, 90
PspXI VCTCGAGB 1 cut(s) 176
RsaI GTAC 2 cut(s) 83, 201
RsaNI GTAC 2 cut(s) 82, 200
RseI CAYNNNNRTG 2 cut(s) 27, 122
SacI GAGCTC 1 cut(s) 177
Sau3AI GATC 1 cut(s) 207
Sau96I GGNCC 5 cut(s) 33, 34, 51, 77, 90
SduI GDGCHC 2 cut(s) 37, 177
SetI ASST 3 cut(s) 13, 60, 177
SfaNI GCATC 1 cut(s) 141
SfcI CTRYAG 1 cut(s) 85
Sfr274I CTCGAG 1 cut(s) 176
SinI GGWCC 1 cut(s) 77
SlaI CTCGAG 1 cut(s) 176
SmiMI CAYNNNNRTG 2 cut(s) 27, 122
SmlI CTYRAG 1 cut(s) 176
SmoI CTYRAG 1 cut(s) 176
SsiI CCGC 1 cut(s) 114
SstI GAGCTC 1 cut(s) 177
StyI CCWWGG 2 cut(s) 54, 123
TaaI ACNGT 1 cut(s) 86
TaqI TCGA 1 cut(s) 177
TscAI CASTG 1 cut(s) 104
TspDTI ATGAA 1 cut(s) 176
TspGWI ACGGA 3 cut(s) 39, 54, 69
TspRI CASTG 1 cut(s) 104
Van91I CCANNNNNTGG 2 cut(s) 60, 99
VpaK11BI GGWCC 1 cut(s) 77
XceI RCATGY 1 cut(s) 20
XcmI CCANNNNNNNNNTGG 1 cut(s) 219
XhoI CTCGAG 1 cut(s) 176
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.