Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0011028.1

Orthogroup ID

OG0011874

Physical Location & Seq

Genomic Coordinates Forward (+)

41442 .. 47580

Gene Structure 6139 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0011028.1_g000010.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 537 bp

atgatatttgtggtcgttttgaagtgttctgtactgtggcctaagtcgacgaagacttgggccgacaatgccctgagagttaatgttgcagtgaagcatgcttcgggcaaagtgacctgggctgacgaagacccgaccccgagaatcaaattcacactgagtacccagagtgaactaaatccaaagcaaaagccccaaagcaaagctcattgtcatcttcagctctacaatccccgccctcaggcctcagtcagagaaagagagtcggtgatcggagcaatgggaggaggcgaacatgcacacggcgagggggcccacggcggagacttcagggcgaaggtgtggagcatgagcggtgggccctactgcaggcccaagcactggaagcgcaacacggccttcgccatgttcggagtcttcctcatctgcattcccatcgccatgaaatccgccgagctcgagcaacggccacatcaaccagttcgccccattccttcacaaatgtggtgcaagaactttggaaagaaagactactga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

178

Amino Acids

20.0

Weight (kDa)

9.82

Isoelectric Point (pI)

28.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011874)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G00585
malus_domestica	MD01G1052300.v1.1
prunus_persica	Prupe.2G159900_v2.0.a1 Prupe.2G159900_v2.0.a1 Prupe.2G159900_v2.0.a1
pyrus_communis	pycom07g12460
rosa_chinensis	RchiOBHm_Chr0c39g0503241 RchiOBHm_Chr1g0353201 RchiOBHm_Chr1g0353351 RchiOBHm_Chr1g0353371
rosa_multiflora	Rmu_sc0001207.1_g000014 Rmu_sc0001207.1_g000076 Rmu_sc0011028.1_g000010
rosa_roxburghii	Rroxscaffold_4G00301890
rosa_rugosa	Rorug01G0235500
rosa_samantha	Rh1AG247700 Rh1CG231400
rosa_wichuraiana	Rw0G018060 Rw1G021580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	381
AccBSI	CCGCTC	1 cut(s)	354
AccI	GTMKAC	1 cut(s)	47
AciI	CCGC	4 cut(s)	235, 321, 354, 450
AcoI	YGGCCR	1 cut(s)	467
AcsI	RAATTY	1 cut(s)	149
AcuI	CTGAAG	2 cut(s)	203, 313
AfaI	GTAC	2 cut(s)	33, 163
AfiI	CCNNNNNNNGG	3 cut(s)	241, 369, 381
AgsI	TTSAA	1 cut(s)	22
AjnI	CCWGG	1 cut(s)	116
AleI	CACNNNNGTG	1 cut(s)	502
AluBI	AGCT	3 cut(s)	206, 223, 457
AluI	AGCT	3 cut(s)	206, 223, 457
Alw21I	GWGCWC	1 cut(s)	459
Alw26I	GTCTC	1 cut(s)	318
Ama87I	CYCGRG	2 cut(s)	139, 458
AoxI	GGCC	8 cut(s)	38, 60, 243, 312, 359, 371, 396, 467
ApaI	GGGCCC	2 cut(s)	316, 363
ApoI	RAATTY	1 cut(s)	149
AspLEI	GCGC	1 cut(s)	390
AspS9I	GGNCC	6 cut(s)	60, 312, 313, 359, 360, 372
AsuHPI	GGTGA	1 cut(s)	280
AvaI	CYCGRG	2 cut(s)	139, 458
AxyI	CCTNAGG	1 cut(s)	240
BaeGI	GKGCMC	2 cut(s)	316, 363
BanII	GRGCYC	3 cut(s)	316, 363, 459
BbsI	GAAGAC	3 cut(s)	59, 135, 409
Bbv12I	GWGCWC	1 cut(s)	459
BccI	CCATC	1 cut(s)	443
BceAI	ACGGC	4 cut(s)	319, 334, 411, 482
BcgI	CGANNNNNNTGC	2 cut(s)	418, 452
BciT130I	CCWGG	1 cut(s)	118
BcoDI	GTCTC	1 cut(s)	318
BfmI	CTRYAG	1 cut(s)	367
Bme1390I	CCNGG	1 cut(s)	118
BmeT110I	CYCGRG	2 cut(s)	139, 458
BmgT120I	GGNCC	6 cut(s)	60, 312, 313, 359, 360, 372
BmiI	GGNNCC	3 cut(s)	313, 314, 361
BmrFI	CCNGG	1 cut(s)	118
BpiI	GAAGAC	3 cut(s)	59, 135, 409
BplI	GAGNNNNNCTC	2 cut(s)	405, 437
BsaJI	CCNNGG	2 cut(s)	117, 316
Bsc4I	CCNNNNNNNGG	3 cut(s)	241, 369, 381
Bse1I	ACTGG	2 cut(s)	386, 479
Bse21I	CCTNAGG	1 cut(s)	240
Bse3DI	GCAATG	1 cut(s)	285
BseBI	CCWGG	1 cut(s)	118
BseDI	CCNNGG	2 cut(s)	117, 316
BseLI	CCNNNNNNNGG	3 cut(s)	241, 369, 381
BseMI	GCAATG	1 cut(s)	285
BseMII	CTCAG	4 cut(s)	65, 149, 254, 261
BseNI	ACTGG	2 cut(s)	386, 479
BseRI	GAGGAG	1 cut(s)	300
BseSI	GKGCMC	2 cut(s)	316, 363
BshFI	GGCC	8 cut(s)	40, 62, 245, 314, 361, 373, 398, 469
BsiHKAI	GWGCWC	1 cut(s)	459
BsiHKCI	CYCGRG	2 cut(s)	139, 458
BslI	CCNNNNNNNGG	3 cut(s)	241, 369, 381
BsmAI	GTCTC	1 cut(s)	318
BsmI	GAATGC	1 cut(s)	429
BsnI	GGCC	8 cut(s)	40, 62, 245, 314, 361, 373, 398, 469
BsoBI	CYCGRG	2 cut(s)	139, 458
Bsp120I	GGGCCC	2 cut(s)	312, 359
Bsp1286I	GDGCHC	3 cut(s)	316, 363, 459
Bsp143I	GATC	1 cut(s)	270
BspACI	CCGC	4 cut(s)	235, 321, 354, 450
BspANI	GGCC	8 cut(s)	40, 62, 245, 314, 361, 373, 398, 469
BspCNI	CTCAG	4 cut(s)	66, 150, 253, 260
BspLI	GGNNCC	3 cut(s)	313, 314, 361
BspMAI	CTGCAG	1 cut(s)	371
BsrBI	CCGCTC	1 cut(s)	354
BsrDI	GCAATG	1 cut(s)	285
BsrI	ACTGG	2 cut(s)	386, 479
BssECI	CCNNGG	2 cut(s)	117, 316
BssMI	GATC	1 cut(s)	270
Bst2UI	CCWGG	1 cut(s)	118
Bst4CI	ACNGT	1 cut(s)	36
BstC8I	GCNNGC	2 cut(s)	99, 371
BstDEI	CTNAG	5 cut(s)	42, 74, 158, 240, 247
BstDSI	CCRYGG	1 cut(s)	316
BstENI	CCTNNNNNAGG	1 cut(s)	367
BstHHI	GCGC	1 cut(s)	390
BstKTI	GATC	1 cut(s)	273
BstMAI	GTCTC	1 cut(s)	318
BstMBI	GATC	1 cut(s)	270
BstMWI	GCNNNNNNNGC	2 cut(s)	68, 385
BstNI	CCWGG	1 cut(s)	118
BstNSI	RCATGY	2 cut(s)	101, 299
BstSCI	CCNGG	1 cut(s)	116
BstSFI	CTRYAG	1 cut(s)	367
BstSLI	GKGCMC	2 cut(s)	316, 363
BstV2I	GAAGAC	3 cut(s)	59, 135, 409
Bsu36I	CCTNAGG	1 cut(s)	240
BsuRI	GGCC	8 cut(s)	40, 62, 245, 314, 361, 373, 398, 469
BtgI	CCRYGG	1 cut(s)	316
BtgZI	GCGATG	1 cut(s)	421
BtsI	GCAGTG	1 cut(s)	96
BtsIMutI	CAGTG	3 cut(s)	96, 155, 379
Cac8I	GCNNGC	2 cut(s)	99, 371
CfoI	GCGC	1 cut(s)	390
Cfr13I	GGNCC	6 cut(s)	60, 312, 313, 359, 360, 372
Csp6I	GTAC	2 cut(s)	32, 162
CviAII	CATG	5 cut(s)	98, 296, 349, 406, 442
CviQI	GTAC	2 cut(s)	32, 162
DdeI	CTNAG	5 cut(s)	42, 74, 158, 240, 247
DpnI	GATC	1 cut(s)	272
DpnII	GATC	1 cut(s)	270
EaeI	YGGCCR	1 cut(s)	467
EciI	GGCGGA	2 cut(s)	336, 439
Ecl136II	GAGCTC	1 cut(s)	457
Eco147I	AGGCCT	1 cut(s)	245
Eco24I	GRGCYC	3 cut(s)	316, 363, 459
Eco53kI	GAGCTC	1 cut(s)	457
Eco57I	CTGAAG	2 cut(s)	203, 313
Eco81I	CCTNAGG	1 cut(s)	240
Eco88I	CYCGRG	2 cut(s)	139, 458
EcoICRI	GAGCTC	1 cut(s)	457
EcoNI	CCTNNNNNAGG	1 cut(s)	367
EcoO109I	RGGNCCY	2 cut(s)	312, 360
EcoRII	CCWGG	1 cut(s)	116
EcoT38I	GRGCYC	3 cut(s)	316, 363, 459
FaeI	CATG	5 cut(s)	101, 299, 352, 409, 445
FaiI	YATR	5 cut(s)	99, 297, 350, 407, 443
FatI	CATG	5 cut(s)	97, 295, 348, 405, 441
FauI	CCCGC	1 cut(s)	242
FblI	GTMKAC	1 cut(s)	47
FriOI	GRGCYC	3 cut(s)	316, 363, 459
GlaI	GCGC	1 cut(s)	389
HaeIII	GGCC	8 cut(s)	40, 62, 245, 314, 361, 373, 398, 469
HhaI	GCGC	1 cut(s)	390
Hin1II	CATG	5 cut(s)	101, 299, 352, 409, 445
Hin6I	GCGC	1 cut(s)	388
HinP1I	GCGC	1 cut(s)	388
HincII	GTYRAC	1 cut(s)	48
HindII	GTYRAC	1 cut(s)	48
HinfI	GANTC	3 cut(s)	144, 263, 414
HphI	GGTGA	1 cut(s)	280
Hpy166II	GTNNAC	2 cut(s)	48, 173
Hpy188I	TCNGA	3 cut(s)	254, 275, 413
Hpy8I	GTNNAC	2 cut(s)	48, 173
Hpy99I	CGWCG	1 cut(s)	52
HpyAV	CCTTC	3 cut(s)	331, 409, 504
HpyCH4III	ACNGT	1 cut(s)	36
HpyCH4V	TGCA	5 cut(s)	89, 299, 369, 429, 510
HpyF10VI	GCNNNNNNNGC	2 cut(s)	68, 385
HpyF3I	CTNAG	5 cut(s)	42, 74, 158, 240, 247
Hsp92II	CATG	5 cut(s)	101, 299, 352, 409, 445
HspAI	GCGC	1 cut(s)	388
Kzo9I	GATC	1 cut(s)	270
LmnI	GCTCC	2 cut(s)	275, 345
LpnPI	CCDG	9 cut(s)	86, 103, 130, 179, 227, 316, 355, 367, 492
MaeIII	GTNAC	1 cut(s)	112
MalI	GATC	1 cut(s)	272
MbiI	CCGCTC	1 cut(s)	354
MboI	GATC	1 cut(s)	270
MboII	GAAGA	4 cut(s)	64, 140, 209, 409
MhlI	GDGCHC	3 cut(s)	316, 363, 459
MluCI	AATT	1 cut(s)	149
MlyI	GAGTC	2 cut(s)	272, 423
MnlI	CCTC	6 cut(s)	249, 256, 278, 281, 301, 431
MseI	TTAA	1 cut(s)	81
MslI	CAYNNNNRTG	2 cut(s)	440, 502
MspR9I	CCNGG	1 cut(s)	118
Mva1269I	GAATGC	1 cut(s)	429
MvaI	CCWGG	1 cut(s)	118
MwoI	GCNNNNNNNGC	2 cut(s)	68, 385
NdeII	GATC	1 cut(s)	270
NlaIII	CATG	5 cut(s)	101, 299, 352, 409, 445
NlaIV	GGNNCC	3 cut(s)	313, 314, 361
NmeAIII	GCCGAG	1 cut(s)	478
NmuCI	GTSAC	1 cut(s)	112
NspI	RCATGY	2 cut(s)	101, 299
OliI	CACNNNNGTG	1 cut(s)	502
PaeI	GCATGC	1 cut(s)	101
PaeR7I	CTCGAG	1 cut(s)	458
PceI	AGGCCT	1 cut(s)	245
PctI	GAATGC	1 cut(s)	429
PfeI	GAWTC	1 cut(s)	144
PflMI	CCANNNNNTGG	1 cut(s)	381
PleI	GAGTC	2 cut(s)	271, 422
PpsI	GAGTC	2 cut(s)	271, 422
Psp124BI	GAGCTC	1 cut(s)	459
Psp6I	CCWGG	1 cut(s)	116
PspGI	CCWGG	1 cut(s)	116
PspN4I	GGNNCC	3 cut(s)	313, 314, 361
PspOMI	GGGCCC	2 cut(s)	312, 359
PspPI	GGNCC	6 cut(s)	60, 312, 313, 359, 360, 372
PspXI	VCTCGAGB	1 cut(s)	458
PstI	CTGCAG	1 cut(s)	371
RsaI	GTAC	2 cut(s)	33, 163
RsaNI	GTAC	2 cut(s)	32, 162
RseI	CAYNNNNRTG	2 cut(s)	440, 502
SacI	GAGCTC	1 cut(s)	459
SalI	GTCGAC	1 cut(s)	46
SaqAI	TTAA	1 cut(s)	81
Sau3AI	GATC	1 cut(s)	270
Sau96I	GGNCC	6 cut(s)	60, 312, 313, 359, 360, 372
SchI	GAGTC	2 cut(s)	272, 423
ScrFI	CCNGG	1 cut(s)	118
SduI	GDGCHC	3 cut(s)	316, 363, 459
SetI	ASST	5 cut(s)	119, 208, 225, 342, 459
SfcI	CTRYAG	1 cut(s)	367
Sfr274I	CTCGAG	1 cut(s)	458
SlaI	CTCGAG	1 cut(s)	458
SmiMI	CAYNNNNRTG	2 cut(s)	440, 502
SmlI	CTYRAG	1 cut(s)	458
SmoI	CTYRAG	1 cut(s)	458
SphI	GCATGC	1 cut(s)	101
Sse9I	AATT	1 cut(s)	149
SseBI	AGGCCT	1 cut(s)	245
SsiI	CCGC	4 cut(s)	235, 321, 354, 450
SstI	GAGCTC	1 cut(s)	459
StuI	AGGCCT	1 cut(s)	245
StyD4I	CCNGG	1 cut(s)	116
TaaI	ACNGT	1 cut(s)	36
TaqI	TCGA	2 cut(s)	47, 459
TasI	AATT	1 cut(s)	149
TatI	WGTACW	1 cut(s)	31
TfiI	GAWTC	1 cut(s)	144
Tru1I	TTAA	1 cut(s)	81
Tru9I	TTAA	1 cut(s)	81
TscAI	CASTG	3 cut(s)	96, 162, 386
TseFI	GTSAC	1 cut(s)	112
Tsp45I	GTSAC	1 cut(s)	112
TspDTI	ATGAA	1 cut(s)	458
TspRI	CASTG	3 cut(s)	96, 162, 386
Van91I	CCANNNNNTGG	1 cut(s)	381
XagI	CCTNNNNNAGG	1 cut(s)	367
XapI	RAATTY	1 cut(s)	149
XceI	RCATGY	2 cut(s)	101, 299
XhoI	CTCGAG	1 cut(s)	458
XmiI	GTMKAC	1 cut(s)	47

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.