Rorug01G0235500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0011874
Physical Location & Seq
Forward (+)
33972263 .. 33975278
3016 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0235500.1

Sequence Viewer

Length: 2874 bp
ATGGGGTTATCCCAGTGCTTGTTTCTGTTTTTGATCTTTTTCTTCAAGGGATGCAACACCAGTACTTCCCATGAGCCATCTTATTGTCATGATGAGGAAAGCTCTGCGTTGCTACAATTCAAGCACAGCTTTACTATCAACGCATCTGCTTCGGGTTTAGAGGGTGCTTATCCGAAAGTGTTGTCATGGAAACAAGCTCAAGGAGGAAACAACACCAGCTGCTGCACATGGGATGGGGTTGAGTGTGACGAAAACACGGGTCATGTGATTGGGCTTGATCTTAGTAGCAGTTATCTCTACGGCTCTATCAACTCCAACAGTTCCCTCTTCCGTCTTGTTCACCTTCAGAGGCTCAACCTTGCTGATAACAACTTCAAATACTCTCAAATTCCTTCAACTATTAGGAATCTTCCTATGCTCACCCAACTCGACCTCTCTTCCTCCTTCTTTGCTGGTCAAGTCCCATCTCAACTTTCACAGTTGGTTAAGTTGTCACTCCTCAATCTTTCTTCCAATATCGAACCTTCTTCTGGTGTAGGATTGTTGGAACTTGATGGATCCAATTTCAGAAATCTAGTTCAAAACTTAACCAGTCTAGAACATCTTCGTCTCCGTTACATCAACATATCTTCGACAATTCCCCATTCCATGGCCAATTTATCATTTTTGACAACCCTCGACTTACATCAGTGTGAGTTGTTTGGAGACTTCCCGGTAACAATTTTCTACTTCCAAAACTTGAAAAATCTTTATCTGAGAGACAACCAAGATCTCATTGGTTATTTGCCTGAATTTAATCAAAGTAGTCGTCTCACAACACTCGATGTTCATGGAACTAGATTTTCAGGGAACTTTCCTTCTTCCATCGGAAAGATTAATTCTTTGAAGCAATTGGATGTGGCTGCATGCAATTTTACACCAGGGTTGATTCCATCTTCTCTAGGTAATCTTAGACAGCTCACATATCTAGACATTTCAGCAAGCAAATTTGGAGGTCCAATTCCTGATTCTTTTGCAAACCTTACAAAATTGACTACTTTTAGGATTGCTACAAGTCCATTAGCTACTGGTCCCGTCCCATCTTGGATAGGTAACTTCAGCCAACTAGTTTACCTAGATTTTTCATATAGTGGACTGAATGGTTCAATTCTTGCGTCATTTTCCAATCTCACGAACCTTGAGATTCTTTATCTTCAGTTCAATCAGCTGAGTGGTACAGTGGAATTTCAAACATTTCAAAACCTTCAAAATCTCTACCAACTCGATCTAGGTAATAATAATCTGGAATTTCTCACTGATTCCGTGATTATGAATGCAACAGTTCCACAGTTCAACCTTCTAGGATTGGCTAGATGCAACTTGACACAGTTCCCATATTTCTTAAGATATCAAAAAAATTTGCAGTATTTGTACCTTGATCAAAACAAAATTCATGGCCAAGTACCGAAATGGATGTGGAACATGAGCTCCGAAAGTTTGAAGTTCTTCAACCTTGGCCATAACCTCCTTTCAGGCTTTGAGCAACTTCCAGTTGTGCTTCCTTGGGTGAACTTGGAATTTTTAAGTCTTTCGTCCAACATGTTCCATGGGCCACTCCCAATACCGGCAGCATCCACTAGAGGCTATGAAGTTCAGGATAACAACTTTGCTGGAGAAGTTCCACCAGGGATCTGCAATATGAGTTCTCTTCTGGCCCTTGATGCGTCTAATAACAACTTCAGTGGCATGATTCCACAGTGTTTCGGAAACTTTAGCGACCATCTGACACTTTTGCTGCTTGGAAATAACTCATTTCATGGCACACTTCTTCAAACATACACCAACAAAAGCAACTTGAGGATGCTTGATGTGAGTCAAAATCAATTGCAAGGGCAACTACCGAGGTCATTGGCTAATTGTCTGATGCTTGAGACTTTGATTCTGTCAAACAATAACTTGAGTGATGTTTTCCCCTTTTGGTTGGCAACTCTTCCGGAGTTAAAACTTTTGGCAATGCGGCATAATGGGTTCCATGGAGTGATAGGAAAGCCTGAAAACAATCAACGGTTCCCGAAGTTGCGTATTTTAGATATGTCTTATAACAATTTCACCGGCGAGTTTCTAGCTGAGCACATCTTCTTTGAGCATGCCATGAGACCAAACATGACTGTCAGACAGACAACGTACATGGAGGCTGGCATCAGCTACGAAACTGGTAATGGTGTATTCACTTTCAATTATGGTGCCACGATTACAATAACGAGTAAAGGTCTGGACAGATACTATCCAAAGATTCAAGAAGCCTTTGCAGTCATTGATATCTCATGCAACAAATTTGAAGGGAAGATTGATGAATGGATTGGAAATCTAAAAGGGCTTCGCTCGCTGAATGTTTCCAATAACCTGCTCACCGGTAGGATCCCATCATCTTTGGGAAATTTAACAGATCTCGAATCACTGGACCTTTCCAATAACAAGCTCTCAGGAGAGATCCCCCAACAACTGGCGCTACTGACATTCCTTGCAGAATTCAATGTCTCTCACAACAATCTCACAGGTCCTATACCAAGTGGAACCCAACTGAGGGGGTTTAATGTCACTGCTTATGAGGGAAACTCCGCACTGTGTGGAGATCCGTTGCCAAAGAAATGTGGGAACTCTAGTACCCCAGCTCAACTGCCACCTTCTGGAACAGAAGACAACAGTTCAGGGTCCGAAAATGAATTTGATTGGATTTTTGTGTTGGCTGGGTACGGAAGTGGGTTCGTTATAGGAGTGGTACTTGCGGAGGTAGCAATCACACGAAGGCCTGTGTTGTTTCTTCAGATAGTTGGAACATTGATCAAACTAAAGGAAAAGATCAAAAGCTGGAAGAGGTCTGGACGCTACATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

957

Amino Acids

106.29

Weight (kDa)

5.97

Isoelectric Point (pI)

35.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRRNT_2 PF08263 30 - 83 2.8e-07 Leucine rich repeat N-terminal domain
LRR_14 PF23598 104 - 202 9.4e-07 Leucine-rich repeat region
LRR_14 PF23598 192 - 301 1.3e-08 Leucine-rich repeat region
LRR_14 PF23598 288 - 493 3.5e-12 Leucine-rich repeat region
LRR_8 PF13855 610 - 669 2.2e-06 Leucine rich repeat
LRR_8 PF13855 636 - 696 8.1e-06 Leucine rich repeat
LRR_8 PF13855 764 - 820 3.8e-08 Leucine rich repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 2079
Acc36I ACCTGC 1 cut(s) 2391
AccB1I GGYRCC 1 cut(s) 2222
AccB7I CCANNNNNTGG 3 cut(s) 649, 2482, 2666
AccIII TCCGGA 1 cut(s) 1972
AciI CCGC 3 cut(s) 1996, 2598, 2765
AclWI GGATC 7 cut(s) 552, 565, 1676, 2392, 2405, 2464, 2606
AcoI YGGCCR 3 cut(s) 651, 1435, 1495
AcuI CTGAAG 5 cut(s) 329, 1081, 1178, 1702, 2786
AdeI CACNNNGTG 1 cut(s) 2606
AfaI GTAC 8 cut(s) 64, 1216, 1412, 1443, 2165, 2644, 2732, 2760
AfiI CCNNNNNNNGG 7 cut(s) 530, 649, 1603, 2482, 2562, 2563, 2666
AflII CTTAAG 1 cut(s) 1381
AflIII ACRYGT 1 cut(s) 1578
AgeI ACCGGT 1 cut(s) 2390
AhlI ACTAGT 1 cut(s) 1105
AjnI CCWGG 2 cut(s) 919, 1663
AjuI GAANNNNNNNTTGG 2 cut(s) 991, 1023
AloI GAACNNNNNNTCC 2 cut(s) 1451, 1483
Alw21I GWGCWC 2 cut(s) 1469, 2112
Alw26I GTCTC 7 cut(s) 614, 699, 753, 815, 1904, 2128, 2521
AlwI GGATC 7 cut(s) 552, 565, 1676, 2392, 2405, 2464, 2606
AlwNI CAGNNNCTG 1 cut(s) 222
Aor13HI TCCGGA 1 cut(s) 1972
AoxI GGCC 6 cut(s) 651, 1435, 1495, 1589, 1692, 2786
ApeKI GCWGC 5 cut(s) 219, 222, 902, 1607, 1774
ArsI GACNNNNNNTTYG 4 cut(s) 167, 199, 793, 825
AseI ATTAAT 1 cut(s) 876
AsiGI ACCGGT 1 cut(s) 2390
Asp700I GAANNNNTTC 2 cut(s) 603, 1484
AspLEI GCGC 1 cut(s) 2488
AspS9I GGNCC 7 cut(s) 995, 1070, 1589, 1693, 2440, 2537, 2691
AsuC2I CCSGG 1 cut(s) 713
AsuHPI GGTGA 5 cut(s) 332, 412, 1558, 2080, 2380
AvaII GGWCC 5 cut(s) 995, 1070, 2440, 2537, 2691
BaeI ACNNNNGTAYC 4 cut(s) 2626, 2659, 2722, 2755
BalI TGGCCA 3 cut(s) 653, 1437, 1497
BamHI GGATCC 2 cut(s) 557, 2397
BanI GGYRCC 1 cut(s) 2222
BanII GRGCYC 1 cut(s) 1469
BbsI GAAGAC 1 cut(s) 2682
Bbv12I GWGCWC 2 cut(s) 1469, 2112
BbvI GCAGC 5 cut(s) 206, 209, 889, 1619, 1761
BccI CCATC 9 cut(s) 85, 227, 472, 548, 872, 940, 1087, 1767, 2410
BceAI ACGGC 1 cut(s) 316
BcgI CGANNNNNNTGC 2 cut(s) 132, 166
BciT130I CCWGG 2 cut(s) 921, 1665
BclI TGATCA 2 cut(s) 1417, 2820
BcnI CCSGG 1 cut(s) 713
BcoDI GTCTC 7 cut(s) 614, 699, 753, 815, 1904, 2128, 2521
BcuI ACTAGT 1 cut(s) 1105
BfoI RGCGCY 1 cut(s) 2489
BfrI CTTAAG 1 cut(s) 1381
BfuAI ACCTGC 1 cut(s) 2391
BglII AGATCT 2 cut(s) 769, 2425
BisI GCNGC 6 cut(s) 220, 223, 903, 1608, 1775, 1997
BlpI GCTNAGC 1 cut(s) 2106
BlsI GCNGC 6 cut(s) 221, 224, 904, 1609, 1776, 1998
BmcAI AGTACT 1 cut(s) 64
Bme1390I CCNGG 3 cut(s) 713, 921, 1665
Bme18I GGWCC 5 cut(s) 995, 1070, 2440, 2537, 2691
BmgT120I GGNCC 7 cut(s) 995, 1070, 1589, 1693, 2440, 2537, 2691
BmiI GGNNCC 8 cut(s) 559, 1072, 2009, 2048, 2224, 2399, 2554, 2692
BmrFI CCNGG 3 cut(s) 713, 921, 1665
BmrI ACTGGG 1 cut(s) 7
BmsI GCATC 8 cut(s) 41, 152, 1343, 1619, 1690, 1830, 1893, 2187
BmuI ACTGGG 1 cut(s) 7
BpiI GAAGAC 1 cut(s) 2682
BplI GAGNNNNNCTC 4 cut(s) 86, 118, 2579, 2611
BpmI CTGGAG 1 cut(s) 1671
Bpu1102I GCTNAGC 1 cut(s) 2106
BpuEI CTTGAG 5 cut(s) 183, 1199, 1855, 1928, 1957
BpuMI CCSGG 1 cut(s) 713
BsaI GGTCTC 1 cut(s) 2128
BsaJI CCNNGG 8 cut(s) 648, 920, 1492, 1541, 1585, 1664, 1880, 2011
BsaWI WCCGGW 2 cut(s) 1972, 2390
BsaXI ACNNNNNCTCC 2 cut(s) 1451, 1481
Bsc4I CCNNNNNNNGG 7 cut(s) 530, 649, 1603, 2482, 2562, 2563, 2666
Bse118I RCCGGY 3 cut(s) 1603, 2090, 2390
Bse1I ACTGG 8 cut(s) 13, 60, 591, 1072, 1529, 2197, 2442, 2487
Bse3DI GCAATG 1 cut(s) 1998
BseAI TCCGGA 1 cut(s) 1972
BseBI CCWGG 2 cut(s) 921, 1665
BseDI CCNNGG 8 cut(s) 648, 920, 1492, 1541, 1585, 1664, 1880, 2011
BseGI GGATG 6 cut(s) 56, 238, 901, 1458, 1610, 1845
BseLI CCNNNNNNNGG 7 cut(s) 530, 649, 1603, 2482, 2562, 2563, 2666
BseMI GCAATG 1 cut(s) 1998
BseMII CTCAG 5 cut(s) 746, 1199, 2097, 2475, 2552
BseNI ACTGG 8 cut(s) 13, 60, 591, 1072, 1529, 2197, 2442, 2487
BseRI GAGGAG 1 cut(s) 488
BseXI GCAGC 5 cut(s) 206, 209, 889, 1619, 1761
BseYI CCCAGC 2 cut(s) 2647, 2726
BsgI GTGCAG 1 cut(s) 208
BshFI GGCC 6 cut(s) 653, 1437, 1497, 1591, 1694, 2788
BshNI GGYRCC 1 cut(s) 2222
BshTI ACCGGT 1 cut(s) 2390
BsiHKAI GWGCWC 2 cut(s) 1469, 2112
BsiSI CCGG 5 cut(s) 713, 1604, 1973, 2091, 2391
BslFI GGGAC 3 cut(s) 446, 1056, 1061
BslI CCNNNNNNNGG 7 cut(s) 530, 649, 1603, 2482, 2562, 2563, 2666
BsmAI GTCTC 7 cut(s) 614, 699, 753, 815, 1904, 2128, 2521
BsmBI CGTCTC 2 cut(s) 614, 815
BsmFI GGGAC 3 cut(s) 446, 1056, 1061
BsmI GAATGC 1 cut(s) 1318
BsnI GGCC 6 cut(s) 653, 1437, 1497, 1591, 1694, 2788
Bso31I GGTCTC 1 cut(s) 2128
Bsp1286I GDGCHC 2 cut(s) 1469, 2112
Bsp13I TCCGGA 1 cut(s) 1972
Bsp1720I GCTNAGC 1 cut(s) 2106
Bsp19I CCATGG 3 cut(s) 648, 1585, 2011
BspACI CCGC 3 cut(s) 1996, 2598, 2765
BspANI GGCC 6 cut(s) 653, 1437, 1497, 1591, 1694, 2788
BspCNI CTCAG 5 cut(s) 747, 1200, 2098, 2474, 2553
BspEI TCCGGA 1 cut(s) 1972
BspHI TCATGA 1 cut(s) 88
BspLI GGNNCC 8 cut(s) 559, 1072, 2009, 2048, 2224, 2399, 2554, 2692
BspMI ACCTGC 1 cut(s) 2391
BspPI GGATC 7 cut(s) 552, 565, 1676, 2392, 2405, 2464, 2606
BspT107I GGYRCC 1 cut(s) 2222
BspTI CTTAAG 1 cut(s) 1381
BspTNI GGTCTC 1 cut(s) 2128
BsrDI GCAATG 1 cut(s) 1998
BsrFI RCCGGY 3 cut(s) 1603, 2090, 2390
BsrI ACTGG 8 cut(s) 13, 60, 591, 1072, 1529, 2197, 2442, 2487
BssAI RCCGGY 3 cut(s) 1603, 2090, 2390
BssECI CCNNGG 8 cut(s) 648, 920, 1492, 1541, 1585, 1664, 1880, 2011
BssT1I CCWWGG 5 cut(s) 648, 1492, 1541, 1585, 2011
Bst2UI CCWGG 2 cut(s) 921, 1665
Bst6I CTCTTC 5 cut(s) 332, 442, 1692, 1974, 2846
BstAFI CTTAAG 1 cut(s) 1381
BstC8I GCNNGC 5 cut(s) 907, 982, 2127, 2176, 2363
BstDEI CTNAG 7 cut(s) 281, 755, 950, 1208, 2106, 2461, 2561
BstDSI CCRYGG 3 cut(s) 648, 1585, 2011
BstF5I GGATG 6 cut(s) 56, 238, 901, 1458, 1610, 1845
BstH2I RGCGCY 1 cut(s) 2489
BstHHI GCGC 1 cut(s) 2488
BstMAI GTCTC 7 cut(s) 614, 699, 753, 815, 1904, 2128, 2521
BstMWI GCNNNNNNNGC 3 cut(s) 1700, 2362, 2771
BstNI CCWGG 2 cut(s) 921, 1665
BstNSI RCATGY 3 cut(s) 909, 1582, 2129
BstSCI CCNGG 3 cut(s) 711, 919, 1663
BstV1I GCAGC 5 cut(s) 206, 209, 889, 1619, 1761
BstV2I GAAGAC 1 cut(s) 2682
BstX2I RGATCY 7 cut(s) 557, 769, 1668, 2397, 2425, 2469, 2611
BstYI RGATCY 7 cut(s) 557, 769, 1668, 2397, 2425, 2469, 2611
BsuRI GGCC 6 cut(s) 653, 1437, 1497, 1591, 1694, 2788
BtgI CCRYGG 3 cut(s) 648, 1585, 2011
BtsCI GGATG 6 cut(s) 56, 238, 901, 1458, 1610, 1845
BtsI GCAGTG 1 cut(s) 2577
BtsIMutI CAGTG 9 cut(s) 20, 695, 1224, 1293, 1726, 1742, 2435, 2577, 2600
BveI ACCTGC 1 cut(s) 2391
Cac8I GCNNGC 5 cut(s) 907, 982, 2127, 2176, 2363
CaiI CAGNNNCTG 1 cut(s) 222
CciI TCATGA 1 cut(s) 88
CfoI GCGC 1 cut(s) 2488
Cfr10I RCCGGY 3 cut(s) 1603, 2090, 2390
Cfr13I GGNCC 7 cut(s) 995, 1070, 1589, 1693, 2440, 2537, 2691
CseI GACGC 2 cut(s) 1143, 1692
Csp6I GTAC 8 cut(s) 63, 1215, 1411, 1442, 2164, 2643, 2731, 2759
CspAI ACCGGT 1 cut(s) 2390
CspCI CAANNNNNGTGG 2 cut(s) 1702, 1737
CviQI GTAC 8 cut(s) 63, 1215, 1411, 1442, 2164, 2643, 2731, 2759
DdeI CTNAG 7 cut(s) 281, 755, 950, 1208, 2106, 2461, 2561
DraIII CACNNNGTG 1 cut(s) 2606
EaeI YGGCCR 3 cut(s) 651, 1435, 1495
Eam1104I CTCTTC 5 cut(s) 332, 442, 1692, 1974, 2846
EarI CTCTTC 5 cut(s) 332, 442, 1692, 1974, 2846
Ecl136II GAGCTC 1 cut(s) 1467
Eco130I CCWWGG 5 cut(s) 648, 1492, 1541, 1585, 2011
Eco147I AGGCCT 1 cut(s) 2788
Eco24I GRGCYC 1 cut(s) 1469
Eco31I GGTCTC 1 cut(s) 2128
Eco32I GATATC 2 cut(s) 1388, 2299
Eco47I GGWCC 5 cut(s) 995, 1070, 2440, 2537, 2691
Eco53kI GAGCTC 1 cut(s) 1467
Eco57I CTGAAG 5 cut(s) 329, 1081, 1178, 1702, 2786
EcoICRI GAGCTC 1 cut(s) 1467
EcoO109I RGGNCCY 1 cut(s) 2537
EcoRI GAATTC 1 cut(s) 2507
EcoRII CCWGG 2 cut(s) 919, 1663
EcoRV GATATC 2 cut(s) 1388, 2299
EcoT14I CCWWGG 5 cut(s) 648, 1492, 1541, 1585, 2011
EcoT38I GRGCYC 1 cut(s) 1469
ErhI CCWWGG 5 cut(s) 648, 1492, 1541, 1585, 2011
Esp3I CGTCTC 2 cut(s) 614, 815
FalI AAGNNNNNCTT 2 cut(s) 113, 145
FaqI GGGAC 3 cut(s) 446, 1056, 1061
FauNDI CATATG 1 cut(s) 2870
FbaI TGATCA 2 cut(s) 1417, 2820
Fnu4HI GCNGC 6 cut(s) 220, 223, 903, 1608, 1775, 1997
FokI GGATG 6 cut(s) 63, 245, 908, 1465, 1597, 1852
FriOI GRGCYC 1 cut(s) 1469
Fsp4HI GCNGC 6 cut(s) 220, 223, 903, 1608, 1775, 1997
GlaI GCGC 1 cut(s) 2487
GluI GCNGC 6 cut(s) 220, 223, 903, 1608, 1775, 1997
GsaI CCCAGC 2 cut(s) 2651, 2730
GsuI CTGGAG 1 cut(s) 1671
HaeII RGCGCY 1 cut(s) 2489
HaeIII GGCC 6 cut(s) 653, 1437, 1497, 1591, 1694, 2788
HapII CCGG 5 cut(s) 713, 1604, 1973, 2091, 2391
HgaI GACGC 2 cut(s) 1143, 1692
HhaI GCGC 1 cut(s) 2488
Hin6I GCGC 1 cut(s) 2486
HinP1I GCGC 1 cut(s) 2486
HpaII CCGG 5 cut(s) 713, 1604, 1973, 2091, 2391
HphI GGTGA 5 cut(s) 332, 412, 1558, 2080, 2380
Hpy166II GTNNAC 4 cut(s) 340, 1111, 1133, 1549
Hpy8I GTNNAC 4 cut(s) 340, 1111, 1133, 1549
HpyCH4IV ACGT 1 cut(s) 2162
HpyF10VI GCNNNNNNNGC 3 cut(s) 1700, 2362, 2771
HpyF3I CTNAG 7 cut(s) 281, 755, 950, 1208, 2106, 2461, 2561
HpySE526I ACGT 1 cut(s) 2162
HspAI GCGC 1 cut(s) 2486
Kpn2I TCCGGA 1 cut(s) 1972
Ksp22I TGATCA 2 cut(s) 1417, 2820
LmnI GCTCC 1 cut(s) 1472
Lsp1109I GCAGC 5 cut(s) 206, 209, 889, 1619, 1761
LweI GCATC 8 cut(s) 41, 152, 1343, 1619, 1690, 1830, 1893, 2187
MaeII ACGT 1 cut(s) 2162
MaeIII GTNAC 6 cut(s) 245, 492, 614, 715, 1091, 2575
MfeI CAATTG 2 cut(s) 890, 1862
MflI RGATCY 7 cut(s) 557, 769, 1668, 2397, 2425, 2469, 2611
MhlI GDGCHC 2 cut(s) 1469, 2112
MlsI TGGCCA 3 cut(s) 653, 1437, 1497
MluNI TGGCCA 3 cut(s) 653, 1437, 1497
MlyI GAGTC 1 cut(s) 1861
MmeI TCCRAC 4 cut(s) 339, 525, 1599, 2791
Mox20I TGGCCA 3 cut(s) 653, 1437, 1497
MroI TCCGGA 1 cut(s) 1972
MroXI GAANNNNTTC 2 cut(s) 603, 1484
MscI TGGCCA 3 cut(s) 653, 1437, 1497
MseI TTAA 9 cut(s) 486, 587, 795, 876, 1382, 1562, 1979, 2420, 2571
MslI CAYNNNNRTG 1 cut(s) 690
Msp20I TGGCCA 3 cut(s) 653, 1437, 1497
MspA1I CMGCKG 2 cut(s) 219, 1207
MspCI CTTAAG 1 cut(s) 1381
MspI CCGG 5 cut(s) 713, 1604, 1973, 2091, 2391
MspR9I CCNGG 3 cut(s) 713, 921, 1665
MunI CAATTG 2 cut(s) 890, 1862
Mva1269I GAATGC 1 cut(s) 1318
MvaI CCWGG 2 cut(s) 921, 1665
MwoI GCNNNNNNNGC 3 cut(s) 1700, 2362, 2771
NciI CCSGG 1 cut(s) 713
NcoI CCATGG 3 cut(s) 648, 1585, 2011
NdeI CATATG 1 cut(s) 2870
NlaIV GGNNCC 8 cut(s) 559, 1072, 2009, 2048, 2224, 2399, 2554, 2692
NmuCI GTSAC 3 cut(s) 245, 492, 2575
NspI RCATGY 3 cut(s) 909, 1582, 2129
PaeI GCATGC 2 cut(s) 909, 2129
PagI TCATGA 1 cut(s) 88
PceI AGGCCT 1 cut(s) 2788
PciI ACATGT 1 cut(s) 1578
PctI GAATGC 1 cut(s) 1318
PdmI GAANNNNTTC 2 cut(s) 603, 1484
PfeI GAWTC 9 cut(s) 406, 928, 1007, 1183, 1298, 1729, 1918, 2272, 2432
PflMI CCANNNNNTGG 3 cut(s) 649, 2482, 2666
PinAI ACCGGT 1 cut(s) 2390
PkrI GCNGC 6 cut(s) 221, 224, 904, 1609, 1776, 1998
PleI GAGTC 1 cut(s) 1860
PpsI GAGTC 1 cut(s) 1860
PpuMI RGGWCCY 1 cut(s) 2537
PscI ACATGT 1 cut(s) 1578
PshBI ATTAAT 1 cut(s) 876
PsiI TTATAA 1 cut(s) 2079
Psp124BI GAGCTC 1 cut(s) 1469
Psp5II RGGWCCY 1 cut(s) 2537
Psp6I CCWGG 2 cut(s) 919, 1663
PspFI CCCAGC 2 cut(s) 2647, 2726
PspGI CCWGG 2 cut(s) 919, 1663
PspN4I GGNNCC 8 cut(s) 559, 1072, 2009, 2048, 2224, 2399, 2554, 2692
PspPI GGNCC 7 cut(s) 995, 1070, 1589, 1693, 2440, 2537, 2691
PspPPI RGGWCCY 1 cut(s) 2537
PstNI CAGNNNCTG 1 cut(s) 222
PsuI RGATCY 7 cut(s) 557, 769, 1668, 2397, 2425, 2469, 2611
PvuII CAGCTG 2 cut(s) 219, 1207
RsaI GTAC 8 cut(s) 64, 1216, 1412, 1443, 2165, 2644, 2732, 2760
RsaNI GTAC 8 cut(s) 63, 1215, 1411, 1442, 2164, 2643, 2731, 2759
RseI CAYNNNNRTG 1 cut(s) 690
SacI GAGCTC 1 cut(s) 1469
SaqAI TTAA 9 cut(s) 486, 587, 795, 876, 1382, 1562, 1979, 2420, 2571
SatI GCNGC 6 cut(s) 220, 223, 903, 1608, 1775, 1997
Sau96I GGNCC 7 cut(s) 995, 1070, 1589, 1693, 2440, 2537, 2691
ScaI AGTACT 1 cut(s) 64
SchI GAGTC 1 cut(s) 1861
ScrFI CCNGG 3 cut(s) 713, 921, 1665
SduI GDGCHC 2 cut(s) 1469, 2112
SfaNI GCATC 8 cut(s) 41, 152, 1343, 1619, 1690, 1830, 1893, 2187
SgrAI CRCCGGYG 1 cut(s) 2090
SinI GGWCC 5 cut(s) 995, 1070, 2440, 2537, 2691
SmiMI CAYNNNNRTG 1 cut(s) 690
SmlI CTYRAG 6 cut(s) 198, 1178, 1381, 1834, 1907, 1936
SmoI CTYRAG 6 cut(s) 198, 1178, 1381, 1834, 1907, 1936
SpeI ACTAGT 1 cut(s) 1105
SphI GCATGC 2 cut(s) 909, 2129
SseBI AGGCCT 1 cut(s) 2788
SsiI CCGC 3 cut(s) 1996, 2598, 2765
SstI GAGCTC 1 cut(s) 1469
StuI AGGCCT 1 cut(s) 2788
StyD4I CCNGG 3 cut(s) 711, 919, 1663
StyI CCWWGG 5 cut(s) 648, 1492, 1541, 1585, 2011
TaiI ACGT 1 cut(s) 2165
TaqI TCGA 7 cut(s) 429, 519, 632, 678, 822, 1263, 2430
TatI WGTACW 1 cut(s) 62
TauI GCSGC 1 cut(s) 1999
TfiI GAWTC 9 cut(s) 406, 928, 1007, 1183, 1298, 1729, 1918, 2272, 2432
Tru1I TTAA 9 cut(s) 486, 587, 795, 876, 1382, 1562, 1979, 2420, 2571
Tru9I TTAA 9 cut(s) 486, 587, 795, 876, 1382, 1562, 1979, 2420, 2571
TscAI CASTG 9 cut(s) 20, 695, 1224, 1300, 1726, 1742, 2442, 2584, 2607
TseFI GTSAC 3 cut(s) 245, 492, 2575
TseI GCWGC 5 cut(s) 219, 222, 902, 1607, 1774
Tsp45I GTSAC 3 cut(s) 245, 492, 2575
TspDTI ATGAA 8 cut(s) 818, 1113, 1325, 1421, 1641, 1784, 2346, 2715
TspGWI ACGGA 5 cut(s) 320, 602, 1291, 2604, 2748
TspRI CASTG 9 cut(s) 20, 695, 1224, 1300, 1726, 1742, 2442, 2584, 2607
Van91I CCANNNNNTGG 3 cut(s) 649, 2482, 2666
Vha464I CTTAAG 1 cut(s) 1381
VpaK11BI GGWCC 5 cut(s) 995, 1070, 2440, 2537, 2691
VspI ATTAAT 1 cut(s) 876
XbaI TCTAGA 2 cut(s) 595, 967
XceI RCATGY 3 cut(s) 909, 1582, 2129
XcmI CCANNNNNNNNNTGG 1 cut(s) 773
XmnI GAANNNNTTC 2 cut(s) 603, 1484
ZrmI AGTACT 1 cut(s) 64
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.