RchiOBHm_Chr1g0353201

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0011874
Physical Location & Seq
Forward (+)
46487463 .. 46488733
1271 bp
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UTR
Exon/CDS
Intron
PRQ57885

Sequence Viewer

Length: 174 bp
ATGGGAGGAGGCGAGCATGCGCACGGCGGAGACTTCAGGGCGAAGGTGTGGAGCATGAGCGGTGGGCCCTACTGCAGGCCCAAGCACTGGAAGCGCAACACGGCCTTCGCCATGTTCGGAGTCTTCCTCATCTGCATTCCTATCGCCATGAAATCTGCCGAGCTCGAGGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

57

Amino Acids

6.28

Weight (kDa)

9.24

Isoelectric Point (pI)

26.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 21
AccB7I CCANNNNNTGG 1 cut(s) 87
AccBSI CCGCTC 1 cut(s) 60
AciI CCGC 2 cut(s) 27, 60
AcuI CTGAAG 1 cut(s) 19
AfiI CCNNNNNNNGG 2 cut(s) 75, 87
AluBI AGCT 1 cut(s) 163
AluI AGCT 1 cut(s) 163
Alw21I GWGCWC 1 cut(s) 165
Alw26I GTCTC 1 cut(s) 24
Ama87I CYCGRG 1 cut(s) 164
AoxI GGCC 3 cut(s) 65, 77, 102
ApaI GGGCCC 1 cut(s) 69
AspLEI GCGC 2 cut(s) 22, 96
AspS9I GGNCC 3 cut(s) 65, 66, 78
AvaI CYCGRG 1 cut(s) 164
BaeGI GKGCMC 1 cut(s) 69
BanII GRGCYC 2 cut(s) 69, 165
BbsI GAAGAC 1 cut(s) 115
Bbv12I GWGCWC 1 cut(s) 165
BceAI ACGGC 2 cut(s) 40, 117
BcgI CGANNNNNNTGC 2 cut(s) 124, 158
BcoDI GTCTC 1 cut(s) 24
BfmI CTRYAG 1 cut(s) 73
BmeT110I CYCGRG 1 cut(s) 164
BmgT120I GGNCC 3 cut(s) 65, 66, 78
BmiI GGNNCC 1 cut(s) 67
BpiI GAAGAC 1 cut(s) 115
BplI GAGNNNNNCTC 2 cut(s) 111, 143
Bsc4I CCNNNNNNNGG 2 cut(s) 75, 87
Bse1I ACTGG 1 cut(s) 92
BseLI CCNNNNNNNGG 2 cut(s) 75, 87
BseNI ACTGG 1 cut(s) 92
BseRI GAGGAG 1 cut(s) 21
BseSI GKGCMC 1 cut(s) 69
BshFI GGCC 3 cut(s) 67, 79, 104
BsiHKAI GWGCWC 1 cut(s) 165
BsiHKCI CYCGRG 1 cut(s) 164
BslI CCNNNNNNNGG 2 cut(s) 75, 87
BsmAI GTCTC 1 cut(s) 24
BsmI GAATGC 1 cut(s) 135
BsnI GGCC 3 cut(s) 67, 79, 104
BsoBI CYCGRG 1 cut(s) 164
Bsp120I GGGCCC 1 cut(s) 65
Bsp1286I GDGCHC 2 cut(s) 69, 165
BspACI CCGC 2 cut(s) 27, 60
BspANI GGCC 3 cut(s) 67, 79, 104
BspLI GGNNCC 1 cut(s) 67
BspMAI CTGCAG 1 cut(s) 77
BsrBI CCGCTC 1 cut(s) 60
BsrI ACTGG 1 cut(s) 92
BstC8I GCNNGC 3 cut(s) 14, 18, 77
BstENI CCTNNNNNAGG 1 cut(s) 73
BstHHI GCGC 2 cut(s) 22, 96
BstMAI GTCTC 1 cut(s) 24
BstMWI GCNNNNNNNGC 1 cut(s) 91
BstNSI RCATGY 1 cut(s) 20
BstSFI CTRYAG 1 cut(s) 73
BstSLI GKGCMC 1 cut(s) 69
BstV2I GAAGAC 1 cut(s) 115
BsuRI GGCC 3 cut(s) 67, 79, 104
BtsIMutI CAGTG 1 cut(s) 85
Cac8I GCNNGC 3 cut(s) 14, 18, 77
CfoI GCGC 2 cut(s) 22, 96
Cfr13I GGNCC 3 cut(s) 65, 66, 78
CviAII CATG 4 cut(s) 17, 55, 112, 148
CviJI RGCY 4 cut(s) 67, 79, 104, 163
CviKI_1 RGCY 4 cut(s) 67, 79, 104, 163
EciI GGCGGA 1 cut(s) 42
Ecl136II GAGCTC 1 cut(s) 163
Eco24I GRGCYC 2 cut(s) 69, 165
Eco53kI GAGCTC 1 cut(s) 163
Eco57I CTGAAG 1 cut(s) 19
Eco88I CYCGRG 1 cut(s) 164
EcoICRI GAGCTC 1 cut(s) 163
EcoNI CCTNNNNNAGG 1 cut(s) 73
EcoO109I RGGNCCY 1 cut(s) 66
EcoT38I GRGCYC 2 cut(s) 69, 165
FaeI CATG 4 cut(s) 20, 58, 115, 151
FaiI YATR 4 cut(s) 18, 56, 113, 149
FatI CATG 4 cut(s) 16, 54, 111, 147
FriOI GRGCYC 2 cut(s) 69, 165
FspAI RTGCGCAY 1 cut(s) 21
FspI TGCGCA 1 cut(s) 21
GlaI GCGC 2 cut(s) 21, 95
HaeIII GGCC 3 cut(s) 67, 79, 104
HhaI GCGC 2 cut(s) 22, 96
Hin1II CATG 4 cut(s) 20, 58, 115, 151
Hin6I GCGC 2 cut(s) 20, 94
HinP1I GCGC 2 cut(s) 20, 94
HinfI GANTC 1 cut(s) 120
Hpy188I TCNGA 1 cut(s) 119
HpyAV CCTTC 2 cut(s) 37, 115
HpyCH4V TGCA 2 cut(s) 75, 135
HpyF10VI GCNNNNNNNGC 1 cut(s) 91
Hsp92II CATG 4 cut(s) 20, 58, 115, 151
HspAI GCGC 2 cut(s) 20, 94
LmnI GCTCC 1 cut(s) 51
LpnPI CCDG 3 cut(s) 22, 61, 73
MbiI CCGCTC 1 cut(s) 60
MboII GAAGA 1 cut(s) 115
MhlI GDGCHC 2 cut(s) 69, 165
MlyI GAGTC 1 cut(s) 129
MnlI CCTC 2 cut(s) 137, 160
Mva1269I GAATGC 1 cut(s) 135
MwoI GCNNNNNNNGC 1 cut(s) 91
NlaIII CATG 4 cut(s) 20, 58, 115, 151
NlaIV GGNNCC 1 cut(s) 67
NsbI TGCGCA 1 cut(s) 21
NspI RCATGY 1 cut(s) 20
PaeI GCATGC 1 cut(s) 20
PaeR7I CTCGAG 1 cut(s) 164
PctI GAATGC 1 cut(s) 135
PflMI CCANNNNNTGG 1 cut(s) 87
PleI GAGTC 1 cut(s) 128
PpsI GAGTC 1 cut(s) 128
Psp124BI GAGCTC 1 cut(s) 165
PspN4I GGNNCC 1 cut(s) 67
PspOMI GGGCCC 1 cut(s) 65
PspPI GGNCC 3 cut(s) 65, 66, 78
PspXI VCTCGAGB 1 cut(s) 164
PstI CTGCAG 1 cut(s) 77
SacI GAGCTC 1 cut(s) 165
Sau96I GGNCC 3 cut(s) 65, 66, 78
SchI GAGTC 1 cut(s) 129
SduI GDGCHC 2 cut(s) 69, 165
SetI ASST 3 cut(s) 48, 165, 171
SfcI CTRYAG 1 cut(s) 73
Sfr274I CTCGAG 1 cut(s) 164
SlaI CTCGAG 1 cut(s) 164
SmlI CTYRAG 1 cut(s) 164
SmoI CTYRAG 1 cut(s) 164
SphI GCATGC 1 cut(s) 20
SsiI CCGC 2 cut(s) 27, 60
SstI GAGCTC 1 cut(s) 165
TaqI TCGA 1 cut(s) 165
TscAI CASTG 1 cut(s) 92
TspDTI ATGAA 1 cut(s) 164
TspRI CASTG 1 cut(s) 92
Van91I CCANNNNNTGG 1 cut(s) 87
XagI CCTNNNNNAGG 1 cut(s) 73
XceI RCATGY 1 cut(s) 20
XhoI CTCGAG 1 cut(s) 164
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.