Rroxscaffold_4G00301890

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0011874
Physical Location & Seq
Reverse (-)
22245225 .. 22246024
800 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00301890.1

Sequence Viewer

Length: 231 bp
ATGGGAGGAGGCGAGCATGCTCACGGCGAGGGGGCCCACGGCGGAGACTTCAGGGCGAAGGTGTGGAGCATGAGCGGTGGGCCCTACTGCAGGCCCAAGCACTGGAAGCGCAACACGGCCTTCGCCATGTTCGGAGTCTTCCTCATCTGCATTCCCATCGCCATGAAATCTGCCGAGCTCGAGGCTTGTCAACCTGTTACTGACAGGGTCTTGCTCTACAATATACTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

76

Amino Acids

8.33

Weight (kDa)

8.57

Isoelectric Point (pI)

33.62

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 102
AccBSI CCGCTC 1 cut(s) 75
AciI CCGC 2 cut(s) 42, 75
AcuI CTGAAG 1 cut(s) 34
AfiI CCNNNNNNNGG 2 cut(s) 90, 102
AluBI AGCT 1 cut(s) 178
AluI AGCT 1 cut(s) 178
Alw21I GWGCWC 1 cut(s) 180
Alw26I GTCTC 1 cut(s) 39
Ama87I CYCGRG 1 cut(s) 179
AoxI GGCC 4 cut(s) 33, 80, 92, 117
ApaI GGGCCC 2 cut(s) 37, 84
AspLEI GCGC 1 cut(s) 111
AspS9I GGNCC 5 cut(s) 33, 34, 80, 81, 93
AvaI CYCGRG 1 cut(s) 179
BaeGI GKGCMC 2 cut(s) 37, 84
BanII GRGCYC 3 cut(s) 37, 84, 180
BbsI GAAGAC 1 cut(s) 130
Bbv12I GWGCWC 1 cut(s) 180
BccI CCATC 1 cut(s) 164
BceAI ACGGC 3 cut(s) 40, 55, 132
BcgI CGANNNNNNTGC 2 cut(s) 139, 173
BcoDI GTCTC 1 cut(s) 39
BfmI CTRYAG 2 cut(s) 88, 227
BmeT110I CYCGRG 1 cut(s) 179
BmgT120I GGNCC 5 cut(s) 33, 34, 80, 81, 93
BmiI GGNNCC 3 cut(s) 34, 35, 82
BpiI GAAGAC 1 cut(s) 130
BplI GAGNNNNNCTC 2 cut(s) 126, 158
BsaJI CCNNGG 1 cut(s) 37
Bsc4I CCNNNNNNNGG 2 cut(s) 90, 102
Bse1I ACTGG 1 cut(s) 107
BseDI CCNNGG 1 cut(s) 37
BseLI CCNNNNNNNGG 2 cut(s) 90, 102
BseNI ACTGG 1 cut(s) 107
BseRI GAGGAG 1 cut(s) 21
BseSI GKGCMC 2 cut(s) 37, 84
BshFI GGCC 4 cut(s) 35, 82, 94, 119
BsiHKAI GWGCWC 1 cut(s) 180
BsiHKCI CYCGRG 1 cut(s) 179
BslI CCNNNNNNNGG 2 cut(s) 90, 102
BsmAI GTCTC 1 cut(s) 39
BsmI GAATGC 1 cut(s) 150
BsnI GGCC 4 cut(s) 35, 82, 94, 119
BsoBI CYCGRG 1 cut(s) 179
Bsp120I GGGCCC 2 cut(s) 33, 80
Bsp1286I GDGCHC 3 cut(s) 37, 84, 180
BspACI CCGC 2 cut(s) 42, 75
BspANI GGCC 4 cut(s) 35, 82, 94, 119
BspLI GGNNCC 3 cut(s) 34, 35, 82
BspMAI CTGCAG 1 cut(s) 92
BsrBI CCGCTC 1 cut(s) 75
BsrI ACTGG 1 cut(s) 107
BssECI CCNNGG 1 cut(s) 37
Bst4CI ACNGT 1 cut(s) 228
BstC8I GCNNGC 3 cut(s) 14, 18, 92
BstDSI CCRYGG 1 cut(s) 37
BstENI CCTNNNNNAGG 1 cut(s) 88
BstHHI GCGC 1 cut(s) 111
BstMAI GTCTC 1 cut(s) 39
BstMWI GCNNNNNNNGC 1 cut(s) 106
BstNSI RCATGY 1 cut(s) 20
BstSFI CTRYAG 2 cut(s) 88, 227
BstSLI GKGCMC 2 cut(s) 37, 84
BstV2I GAAGAC 1 cut(s) 130
BsuRI GGCC 4 cut(s) 35, 82, 94, 119
BtgI CCRYGG 1 cut(s) 37
BtgZI GCGATG 1 cut(s) 142
BtsIMutI CAGTG 1 cut(s) 100
Cac8I GCNNGC 3 cut(s) 14, 18, 92
CfoI GCGC 1 cut(s) 111
Cfr13I GGNCC 5 cut(s) 33, 34, 80, 81, 93
CviAII CATG 4 cut(s) 17, 70, 127, 163
CviJI RGCY 6 cut(s) 35, 82, 94, 119, 178, 185
CviKI_1 RGCY 6 cut(s) 35, 82, 94, 119, 178, 185
EciI GGCGGA 1 cut(s) 57
Ecl136II GAGCTC 1 cut(s) 178
Eco24I GRGCYC 3 cut(s) 37, 84, 180
Eco53kI GAGCTC 1 cut(s) 178
Eco57I CTGAAG 1 cut(s) 34
Eco88I CYCGRG 1 cut(s) 179
EcoICRI GAGCTC 1 cut(s) 178
EcoNI CCTNNNNNAGG 1 cut(s) 88
EcoO109I RGGNCCY 2 cut(s) 33, 81
EcoT38I GRGCYC 3 cut(s) 37, 84, 180
FaeI CATG 4 cut(s) 20, 73, 130, 166
FaiI YATR 5 cut(s) 18, 71, 128, 164, 224
FatI CATG 4 cut(s) 16, 69, 126, 162
FriOI GRGCYC 3 cut(s) 37, 84, 180
GlaI GCGC 1 cut(s) 110
HaeIII GGCC 4 cut(s) 35, 82, 94, 119
HhaI GCGC 1 cut(s) 111
Hin1II CATG 4 cut(s) 20, 73, 130, 166
Hin6I GCGC 1 cut(s) 109
HinP1I GCGC 1 cut(s) 109
HincII GTYRAC 1 cut(s) 191
HindII GTYRAC 1 cut(s) 191
HinfI GANTC 1 cut(s) 135
Hpy166II GTNNAC 1 cut(s) 191
Hpy188I TCNGA 1 cut(s) 134
Hpy8I GTNNAC 1 cut(s) 191
HpyAV CCTTC 2 cut(s) 52, 130
HpyCH4III ACNGT 1 cut(s) 228
HpyCH4V TGCA 2 cut(s) 90, 150
HpyF10VI GCNNNNNNNGC 1 cut(s) 106
Hsp92II CATG 4 cut(s) 20, 73, 130, 166
HspAI GCGC 1 cut(s) 109
LmnI GCTCC 1 cut(s) 66
LpnPI CCDG 5 cut(s) 37, 76, 88, 190, 207
MaeIII GTNAC 1 cut(s) 196
MbiI CCGCTC 1 cut(s) 75
MboII GAAGA 1 cut(s) 130
MhlI GDGCHC 3 cut(s) 37, 84, 180
MlyI GAGTC 1 cut(s) 144
MnlI CCTC 3 cut(s) 22, 152, 175
MslI CAYNNNNRTG 1 cut(s) 161
Mva1269I GAATGC 1 cut(s) 150
MwoI GCNNNNNNNGC 1 cut(s) 106
NlaIII CATG 4 cut(s) 20, 73, 130, 166
NlaIV GGNNCC 3 cut(s) 34, 35, 82
NmeAIII GCCGAG 1 cut(s) 199
NspI RCATGY 1 cut(s) 20
PaeI GCATGC 1 cut(s) 20
PaeR7I CTCGAG 1 cut(s) 179
PctI GAATGC 1 cut(s) 150
PflFI GACNNNGTC 1 cut(s) 206
PflMI CCANNNNNTGG 1 cut(s) 102
PleI GAGTC 1 cut(s) 143
PpsI GAGTC 1 cut(s) 143
Psp124BI GAGCTC 1 cut(s) 180
PspN4I GGNNCC 3 cut(s) 34, 35, 82
PspOMI GGGCCC 2 cut(s) 33, 80
PspPI GGNCC 5 cut(s) 33, 34, 80, 81, 93
PspXI VCTCGAGB 1 cut(s) 179
PstI CTGCAG 1 cut(s) 92
PsyI GACNNNGTC 1 cut(s) 206
RseI CAYNNNNRTG 1 cut(s) 161
SacI GAGCTC 1 cut(s) 180
Sau96I GGNCC 5 cut(s) 33, 34, 80, 81, 93
SchI GAGTC 1 cut(s) 144
SduI GDGCHC 3 cut(s) 37, 84, 180
SetI ASST 3 cut(s) 63, 180, 196
SfcI CTRYAG 2 cut(s) 88, 227
Sfr274I CTCGAG 1 cut(s) 179
SlaI CTCGAG 1 cut(s) 179
SmiMI CAYNNNNRTG 1 cut(s) 161
SmlI CTYRAG 1 cut(s) 179
SmoI CTYRAG 1 cut(s) 179
SphI GCATGC 1 cut(s) 20
SsiI CCGC 2 cut(s) 42, 75
SstI GAGCTC 1 cut(s) 180
TaaI ACNGT 1 cut(s) 228
TaqI TCGA 1 cut(s) 180
TscAI CASTG 1 cut(s) 107
TspDTI ATGAA 1 cut(s) 179
TspRI CASTG 1 cut(s) 107
Tth111I GACNNNGTC 1 cut(s) 206
Van91I CCANNNNNTGG 1 cut(s) 102
XagI CCTNNNNNAGG 1 cut(s) 88
XceI RCATGY 1 cut(s) 20
XhoI CTCGAG 1 cut(s) 179
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.