Rw0G018060

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Contig00801
OG0011874
Physical Location & Seq
Reverse (-)
10965 .. 12661
1697 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw0G018060.1

Sequence Viewer

Length: 249 bp
ATGGGAGGAGGCGAACATGCACACGGCGAGGGGGCCCACGGCGGAGACTTCAGGGCGAAGGTGTGGAGCATGGGCGGTGGGCCCTACTGCAGGCCCAAGCACTGGAAGCGCAACACGGCCTTCGCCATGTTCGGAGTCTTCCTCATCTTCATTCCCATCGCCATGAAATCTGCCGAGCTCCAGTGTATGACTGATCCGATTGAGAATTTTGGATGTCAAAAGATGAAACACTTTGGAGCTAAAACTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

82

Amino Acids

9.02

Weight (kDa)

9.22

Isoelectric Point (pI)

24.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 102
AciI CCGC 2 cut(s) 42, 75
AclWI GGATC 1 cut(s) 188
AcsI RAATTY 1 cut(s) 205
AcuI CTGAAG 1 cut(s) 34
AfiI CCNNNNNNNGG 2 cut(s) 90, 102
AluBI AGCT 2 cut(s) 178, 239
AluI AGCT 2 cut(s) 178, 239
Alw21I GWGCWC 1 cut(s) 180
Alw26I GTCTC 1 cut(s) 39
AlwI GGATC 1 cut(s) 188
AoxI GGCC 4 cut(s) 33, 80, 92, 117
ApaI GGGCCC 2 cut(s) 37, 84
ApoI RAATTY 1 cut(s) 205
AspLEI GCGC 1 cut(s) 111
AspS9I GGNCC 5 cut(s) 33, 34, 80, 81, 93
BaeGI GKGCMC 2 cut(s) 37, 84
BanII GRGCYC 3 cut(s) 37, 84, 180
BbsI GAAGAC 1 cut(s) 130
Bbv12I GWGCWC 1 cut(s) 180
BccI CCATC 1 cut(s) 164
BceAI ACGGC 3 cut(s) 40, 55, 132
BcoDI GTCTC 1 cut(s) 39
BfmI CTRYAG 1 cut(s) 88
BmgT120I GGNCC 5 cut(s) 33, 34, 80, 81, 93
BmiI GGNNCC 3 cut(s) 34, 35, 82
BpiI GAAGAC 1 cut(s) 130
BplI GAGNNNNNCTC 2 cut(s) 126, 158
BpmI CTGGAG 1 cut(s) 164
BsaJI CCNNGG 1 cut(s) 37
Bsc4I CCNNNNNNNGG 2 cut(s) 90, 102
Bse1I ACTGG 2 cut(s) 107, 181
BseDI CCNNGG 1 cut(s) 37
BseGI GGATG 1 cut(s) 218
BseLI CCNNNNNNNGG 2 cut(s) 90, 102
BseNI ACTGG 2 cut(s) 107, 181
BseRI GAGGAG 1 cut(s) 21
BseSI GKGCMC 2 cut(s) 37, 84
BshFI GGCC 4 cut(s) 35, 82, 94, 119
BsiHKAI GWGCWC 1 cut(s) 180
BslI CCNNNNNNNGG 2 cut(s) 90, 102
BsmAI GTCTC 1 cut(s) 39
BsnI GGCC 4 cut(s) 35, 82, 94, 119
Bsp120I GGGCCC 2 cut(s) 33, 80
Bsp1286I GDGCHC 3 cut(s) 37, 84, 180
Bsp143I GATC 1 cut(s) 193
BspACI CCGC 2 cut(s) 42, 75
BspANI GGCC 4 cut(s) 35, 82, 94, 119
BspLI GGNNCC 3 cut(s) 34, 35, 82
BspMAI CTGCAG 1 cut(s) 92
BspPI GGATC 1 cut(s) 188
BsrI ACTGG 2 cut(s) 107, 181
BssECI CCNNGG 1 cut(s) 37
BssMI GATC 1 cut(s) 193
BstC8I GCNNGC 1 cut(s) 92
BstDEI CTNAG 1 cut(s) 246
BstDSI CCRYGG 1 cut(s) 37
BstENI CCTNNNNNAGG 1 cut(s) 88
BstF5I GGATG 1 cut(s) 218
BstHHI GCGC 1 cut(s) 111
BstKTI GATC 1 cut(s) 196
BstMAI GTCTC 1 cut(s) 39
BstMBI GATC 1 cut(s) 193
BstMWI GCNNNNNNNGC 1 cut(s) 106
BstNSI RCATGY 1 cut(s) 20
BstSFI CTRYAG 1 cut(s) 88
BstSLI GKGCMC 2 cut(s) 37, 84
BstV2I GAAGAC 1 cut(s) 130
BsuRI GGCC 4 cut(s) 35, 82, 94, 119
BtgI CCRYGG 1 cut(s) 37
BtgZI GCGATG 1 cut(s) 142
BtsCI GGATG 1 cut(s) 218
BtsIMutI CAGTG 2 cut(s) 100, 188
Cac8I GCNNGC 1 cut(s) 92
CfoI GCGC 1 cut(s) 111
Cfr13I GGNCC 5 cut(s) 33, 34, 80, 81, 93
CviAII CATG 4 cut(s) 17, 70, 127, 163
CviJI RGCY 6 cut(s) 35, 82, 94, 119, 178, 239
CviKI_1 RGCY 6 cut(s) 35, 82, 94, 119, 178, 239
DdeI CTNAG 1 cut(s) 246
DpnI GATC 1 cut(s) 195
DpnII GATC 1 cut(s) 193
EciI GGCGGA 1 cut(s) 57
Ecl136II GAGCTC 1 cut(s) 178
Eco24I GRGCYC 3 cut(s) 37, 84, 180
Eco53kI GAGCTC 1 cut(s) 178
Eco57I CTGAAG 1 cut(s) 34
EcoICRI GAGCTC 1 cut(s) 178
EcoNI CCTNNNNNAGG 1 cut(s) 88
EcoO109I RGGNCCY 2 cut(s) 33, 81
EcoT38I GRGCYC 3 cut(s) 37, 84, 180
FaeI CATG 4 cut(s) 20, 73, 130, 166
FaiI YATR 5 cut(s) 18, 71, 128, 164, 188
FatI CATG 4 cut(s) 16, 69, 126, 162
FokI GGATG 1 cut(s) 225
FriOI GRGCYC 3 cut(s) 37, 84, 180
GlaI GCGC 1 cut(s) 110
GsuI CTGGAG 1 cut(s) 164
HaeIII GGCC 4 cut(s) 35, 82, 94, 119
HhaI GCGC 1 cut(s) 111
Hin1II CATG 4 cut(s) 20, 73, 130, 166
Hin6I GCGC 1 cut(s) 109
HinP1I GCGC 1 cut(s) 109
HinfI GANTC 1 cut(s) 135
Hpy188I TCNGA 2 cut(s) 134, 198
HpyAV CCTTC 2 cut(s) 52, 130
HpyCH4V TGCA 2 cut(s) 20, 90
HpyF10VI GCNNNNNNNGC 1 cut(s) 106
HpyF3I CTNAG 1 cut(s) 246
Hsp92II CATG 4 cut(s) 20, 73, 130, 166
HspAI GCGC 1 cut(s) 109
Kzo9I GATC 1 cut(s) 193
LmnI GCTCC 3 cut(s) 66, 183, 236
LpnPI CCDG 4 cut(s) 37, 76, 88, 194
MalI GATC 1 cut(s) 195
MboI GATC 1 cut(s) 193
MboII GAAGA 2 cut(s) 130, 139
MhlI GDGCHC 3 cut(s) 37, 84, 180
MluCI AATT 1 cut(s) 205
MlyI GAGTC 1 cut(s) 144
MnlI CCTC 2 cut(s) 22, 152
MslI CAYNNNNRTG 1 cut(s) 161
MwoI GCNNNNNNNGC 1 cut(s) 106
NdeII GATC 1 cut(s) 193
NlaIII CATG 4 cut(s) 20, 73, 130, 166
NlaIV GGNNCC 3 cut(s) 34, 35, 82
NmeAIII GCCGAG 1 cut(s) 199
NspI RCATGY 1 cut(s) 20
PflMI CCANNNNNTGG 1 cut(s) 102
PleI GAGTC 1 cut(s) 143
PpsI GAGTC 1 cut(s) 143
Psp124BI GAGCTC 1 cut(s) 180
PspN4I GGNNCC 3 cut(s) 34, 35, 82
PspOMI GGGCCC 2 cut(s) 33, 80
PspPI GGNCC 5 cut(s) 33, 34, 80, 81, 93
PstI CTGCAG 1 cut(s) 92
RseI CAYNNNNRTG 1 cut(s) 161
SacI GAGCTC 1 cut(s) 180
Sau3AI GATC 1 cut(s) 193
Sau96I GGNCC 5 cut(s) 33, 34, 80, 81, 93
SchI GAGTC 1 cut(s) 144
SduI GDGCHC 3 cut(s) 37, 84, 180
SetI ASST 3 cut(s) 63, 180, 241
SfcI CTRYAG 1 cut(s) 88
SmiMI CAYNNNNRTG 1 cut(s) 161
Sse9I AATT 1 cut(s) 205
SsiI CCGC 2 cut(s) 42, 75
SstI GAGCTC 1 cut(s) 180
TasI AATT 1 cut(s) 205
TscAI CASTG 2 cut(s) 107, 188
TspDTI ATGAA 3 cut(s) 139, 179, 239
TspRI CASTG 2 cut(s) 107, 188
Van91I CCANNNNNTGG 1 cut(s) 102
XagI CCTNNNNNAGG 1 cut(s) 88
XapI RAATTY 1 cut(s) 205
XceI RCATGY 1 cut(s) 20
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.