) efflux antiporter
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT4G00630 AT4G00630 |
| fragaria_vesca | FvH4_7g13660 FvH4_7g13660 FvH4_7g13660 FvH4_7g13660 FvH4_7g13660 |
| malus_domestica | MD01G1053700.v1.1 MD07G1141400.v1.1 |
| prunus_persica | Prupe.2G162700_v2.0.a1 Prupe.2G162700_v2.0.a1 |
| pyrus_communis | pycom01g07930 pycom07g14030 |
| rosa_chinensis | RchiOBHm_Chr1g0353741 |
| rosa_laevigata | RLG00000028262 |
| rosa_multiflora | Rmu_sc0005947.1_g000021 |
| rosa_roxburghii | Rroxscaffold_4G00301700 |
| rosa_rugosa | Rorug01G0237300 Rorug01G0237300 |
| rosa_samantha | Rh1AG249500 Rh1BG219600 Rh1CG232200 Rh1DG246600 |
| rosa_wichuraiana | Rw1G021770 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 1165 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 3209 |
| Acc36I | ACCTGC | 4 cut(s) | 47, 1165, 2230, 2632 |
| AccB1I | GGYRCC | 1 cut(s) | 490 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 2314, 2669 |
| AccBSI | CCGCTC | 2 cut(s) | 2254, 3564 |
| AccII | CGCG | 3 cut(s) | 325, 553, 1346 |
| AciI | CCGC | 8 cut(s) | 76, 325, 1695, 2254, 2994, 3416, 3526, 3564 |
| AclWI | GGATC | 3 cut(s) | 12, 1649, 2711 |
| AcoI | YGGCCR | 6 cut(s) | 903, 2278, 2967, 2995, 3109, 3183 |
| AcuI | CTGAAG | 4 cut(s) | 737, 1434, 2418, 3672 |
| AdeI | CACNNNGTG | 1 cut(s) | 1088 |
| AfaI | GTAC | 3 cut(s) | 565, 1943, 1998 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 1174, 1336, 1937, 2314, 2669, 2953, 3394 |
| AflIII | ACRYGT | 1 cut(s) | 1863 |
| AhlI | ACTAGT | 1 cut(s) | 1730 |
| Alw21I | GWGCWC | 3 cut(s) | 407, 2267, 3246 |
| Alw26I | GTCTC | 4 cut(s) | 2925, 3053, 3133, 3422 |
| AlwI | GGATC | 3 cut(s) | 12, 1649, 2711 |
| AlwNI | CAGNNNCTG | 4 cut(s) | 602, 1597, 2627, 3461 |
| Ama87I | CYCGRG | 1 cut(s) | 2057 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 77, 708, 3644 |
| AspA2I | CCTAGG | 1 cut(s) | 1481 |
| AspLEI | GCGC | 3 cut(s) | 553, 930, 3275 |
| AspS9I | GGNCC | 7 cut(s) | 792, 1623, 1692, 1967, 2180, 2683, 3522 |
| AsuC2I | CCSGG | 1 cut(s) | 2744 |
| AsuII | TTCGAA | 1 cut(s) | 3034 |
| AsuNHI | GCTAGC | 1 cut(s) | 2983 |
| AvaI | CYCGRG | 1 cut(s) | 2057 |
| AvaII | GGWCC | 3 cut(s) | 792, 2180, 3522 |
| AvrII | CCTAGG | 1 cut(s) | 1481 |
| BaeGI | GKGCMC | 1 cut(s) | 3370 |
| BalI | TGGCCA | 3 cut(s) | 905, 2969, 3111 |
| BanI | GGYRCC | 1 cut(s) | 490 |
| BanII | GRGCYC | 4 cut(s) | 407, 1665, 2114, 3328 |
| BbsI | GAAGAC | 5 cut(s) | 1347, 2549, 2666, 2843, 3612 |
| Bbv12I | GWGCWC | 3 cut(s) | 407, 2267, 3246 |
| BccI | CCATC | 8 cut(s) | 452, 818, 1268, 1562, 1594, 2978, 3290, 3515 |
| BceAI | ACGGC | 2 cut(s) | 2265, 3170 |
| BcgI | CGANNNNNNTGC | 6 cut(s) | 1021, 1055, 2797, 2831, 3014, 3048 |
| BclI | TGATCA | 3 cut(s) | 238, 1369, 3379 |
| BcnI | CCSGG | 1 cut(s) | 2744 |
| BcoDI | GTCTC | 4 cut(s) | 2925, 3053, 3133, 3422 |
| BcuI | ACTAGT | 1 cut(s) | 1730 |
| BfaI | CTAG | 7 cut(s) | 1482, 1731, 1766, 1791, 2546, 2984, 3200 |
| BfoI | RGCGCY | 1 cut(s) | 931 |
| BfuAI | ACCTGC | 4 cut(s) | 47, 1165, 2230, 2632 |
| BlnI | CCTAGG | 1 cut(s) | 1481 |
| BlpI | GCTNAGC | 2 cut(s) | 1758, 3537 |
| Bme18I | GGWCC | 3 cut(s) | 792, 2180, 3522 |
| BmeT110I | CYCGRG | 1 cut(s) | 2057 |
| BmgT120I | GGNCC | 7 cut(s) | 792, 1623, 1692, 1967, 2180, 2683, 3522 |
| BmiI | GGNNCC | 5 cut(s) | 445, 492, 793, 3438, 3524 |
| BmsI | GCATC | 5 cut(s) | 1087, 1180, 1965, 3017, 3214 |
| BmtI | GCTAGC | 1 cut(s) | 2987 |
| BpiI | GAAGAC | 5 cut(s) | 1347, 2549, 2666, 2843, 3612 |
| BplI | GAGNNNNNCTC | 6 cut(s) | 1647, 1679, 1835, 1867, 3228, 3260 |
| BpmI | CTGGAG | 2 cut(s) | 1220, 1941 |
| Bpu10I | CCTNAGC | 3 cut(s) | 406, 2118, 3471 |
| Bpu1102I | GCTNAGC | 2 cut(s) | 1758, 3537 |
| Bpu14I | TTCGAA | 1 cut(s) | 3034 |
| BpuEI | CTTGAG | 2 cut(s) | 1094, 1735 |
| BpuMI | CCSGG | 1 cut(s) | 2744 |
| BsaBI | GATNNNNATC | 1 cut(s) | 240 |
| BsaI | GGTCTC | 1 cut(s) | 3422 |
| BsaWI | WCCGGW | 2 cut(s) | 161, 802 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 1174, 1336, 1937, 2314, 2669, 2953, 3394 |
| Bse1I | ACTGG | 3 cut(s) | 2998, 3209, 3666 |
| Bse3DI | GCAATG | 4 cut(s) | 1625, 2209, 2391, 2655 |
| Bse8I | GATNNNNATC | 1 cut(s) | 240 |
| BseGI | GGATG | 5 cut(s) | 463, 625, 1030, 2219, 3640 |
| BseJI | GATNNNNATC | 1 cut(s) | 240 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 1174, 1336, 1937, 2314, 2669, 2953, 3394 |
| BseMI | GCAATG | 4 cut(s) | 1625, 2209, 2391, 2655 |
| BseMII | CTCAG | 9 cut(s) | 420, 423, 1227, 1322, 1481, 2132, 3485, 3528, 3537 |
| BseNI | ACTGG | 3 cut(s) | 2998, 3209, 3666 |
| BseRI | GAGGAG | 6 cut(s) | 962, 1034, 1223, 1856, 2913, 3184 |
| BseSI | GKGCMC | 1 cut(s) | 3370 |
| BseYI | CCCAGC | 1 cut(s) | 3404 |
| BsgI | GTGCAG | 1 cut(s) | 1065 |
| Bsh1236I | CGCG | 3 cut(s) | 325, 553, 1346 |
| BshNI | GGYRCC | 1 cut(s) | 490 |
| BsiHKAI | GWGCWC | 3 cut(s) | 407, 2267, 3246 |
| BsiHKCI | CYCGRG | 1 cut(s) | 2057 |
| BsiSI | CCGG | 3 cut(s) | 162, 803, 2744 |
| BslFI | GGGAC | 5 cut(s) | 805, 1585, 2017, 3407, 3508 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 1174, 1336, 1937, 2314, 2669, 2953, 3394 |
| BsmAI | GTCTC | 4 cut(s) | 2925, 3053, 3133, 3422 |
| BsmFI | GGGAC | 5 cut(s) | 805, 1585, 2017, 3407, 3508 |
| BsmI | GAATGC | 3 cut(s) | 893, 1009, 2512 |
| Bso31I | GGTCTC | 1 cut(s) | 3422 |
| BsoBI | CYCGRG | 1 cut(s) | 2057 |
| Bsp119I | TTCGAA | 1 cut(s) | 3034 |
| Bsp1286I | GDGCHC | 7 cut(s) | 407, 1665, 2114, 2267, 3246, 3328, 3370 |
| Bsp1407I | TGTACA | 1 cut(s) | 1996 |
| Bsp143I | GATC | 8 cut(s) | 4, 238, 675, 1369, 1641, 2436, 2716, 3379 |
| Bsp1720I | GCTNAGC | 2 cut(s) | 1758, 3537 |
| Bsp19I | CCATGG | 3 cut(s) | 2275, 2583, 2978 |
| BspACI | CCGC | 8 cut(s) | 76, 325, 1695, 2254, 2994, 3416, 3526, 3564 |
| BspCNI | CTCAG | 9 cut(s) | 419, 424, 1228, 1323, 1480, 2131, 3484, 3529, 3538 |
| BspFNI | CGCG | 3 cut(s) | 325, 553, 1346 |
| BspHI | TCATGA | 4 cut(s) | 394, 1372, 1722, 2694 |
| BspLI | GGNNCC | 5 cut(s) | 445, 492, 793, 3438, 3524 |
| BspMAI | CTGCAG | 7 cut(s) | 618, 988, 1567, 2230, 2241, 3280, 3450 |
| BspMI | ACCTGC | 4 cut(s) | 47, 1165, 2230, 2632 |
| BspOI | GCTAGC | 1 cut(s) | 2987 |
| BspPI | GGATC | 3 cut(s) | 12, 1649, 2711 |
| BspQI | GCTCTTC | 2 cut(s) | 1318, 2948 |
| BspT104I | TTCGAA | 1 cut(s) | 3034 |
| BspT107I | GGYRCC | 1 cut(s) | 490 |
| BspTNI | GGTCTC | 1 cut(s) | 3422 |
| BsrBI | CCGCTC | 2 cut(s) | 2254, 3564 |
| BsrDI | GCAATG | 4 cut(s) | 1625, 2209, 2391, 2655 |
| BsrGI | TGTACA | 1 cut(s) | 1996 |
| BsrI | ACTGG | 3 cut(s) | 2998, 3209, 3666 |
| BssMI | GATC | 8 cut(s) | 4, 238, 675, 1369, 1641, 2436, 2716, 3379 |
| BssT1I | CCWWGG | 7 cut(s) | 1168, 1222, 1481, 2275, 2583, 2978, 3432 |
| Bst4CI | ACNGT | 7 cut(s) | 172, 184, 911, 1497, 2043, 2701, 3319 |
| Bst6I | CTCTTC | 7 cut(s) | 170, 447, 681, 1200, 1318, 1564, 2948 |
| BstAPI | GCANNNNNTGC | 5 cut(s) | 632, 2245, 2432, 2885, 3275 |
| BstAUI | TGTACA | 1 cut(s) | 1996 |
| BstBI | TTCGAA | 1 cut(s) | 3034 |
| BstC8I | GCNNGC | 6 cut(s) | 1056, 1954, 2465, 2985, 2992, 3271 |
| BstDSI | CCRYGG | 3 cut(s) | 2275, 2583, 2978 |
| BstF5I | GGATG | 5 cut(s) | 463, 625, 1030, 2219, 3640 |
| BstFNI | CGCG | 3 cut(s) | 325, 553, 1346 |
| BstH2I | RGCGCY | 1 cut(s) | 931 |
| BstHHI | GCGC | 3 cut(s) | 553, 930, 3275 |
| BstKTI | GATC | 8 cut(s) | 7, 241, 678, 1372, 1644, 2439, 2719, 3382 |
| BstMAI | GTCTC | 4 cut(s) | 2925, 3053, 3133, 3422 |
| BstMBI | GATC | 8 cut(s) | 4, 238, 675, 1369, 1641, 2436, 2716, 3379 |
| BstNSI | RCATGY | 3 cut(s) | 159, 1867, 3273 |
| BstSLI | GKGCMC | 1 cut(s) | 3370 |
| BstUI | CGCG | 3 cut(s) | 325, 553, 1346 |
| BstV2I | GAAGAC | 5 cut(s) | 1347, 2549, 2666, 2843, 3612 |
| BstX2I | RGATCY | 2 cut(s) | 4, 1641 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 3254 |
| BstYI | RGATCY | 2 cut(s) | 4, 1641 |
| BtgI | CCRYGG | 3 cut(s) | 2275, 2583, 2978 |
| BtsCI | GGATG | 5 cut(s) | 463, 625, 1030, 2219, 3640 |
| BtsI | GCAGTG | 3 cut(s) | 52, 2223, 2531 |
| BtsIMutI | CAGTG | 6 cut(s) | 52, 916, 2223, 2531, 3648, 3659 |
| BveI | ACCTGC | 4 cut(s) | 47, 1165, 2230, 2632 |
| Cac8I | GCNNGC | 6 cut(s) | 1056, 1954, 2465, 2985, 2992, 3271 |
| CaiI | CAGNNNCTG | 4 cut(s) | 602, 1597, 2627, 3461 |
| CciI | TCATGA | 4 cut(s) | 394, 1372, 1722, 2694 |
| CfoI | GCGC | 3 cut(s) | 553, 930, 3275 |
| Cfr13I | GGNCC | 7 cut(s) | 792, 1623, 1692, 1967, 2180, 2683, 3522 |
| CseI | GACGC | 2 cut(s) | 1352, 2469 |
| Csp6I | GTAC | 3 cut(s) | 564, 1942, 1997 |
| CspCI | CAANNNNNGTGG | 6 cut(s) | 1422, 1457, 1717, 1752, 2212, 2247 |
| CviQI | GTAC | 3 cut(s) | 564, 1942, 1997 |
| DpnI | GATC | 8 cut(s) | 6, 240, 677, 1371, 1643, 2438, 2718, 3381 |
| DpnII | GATC | 8 cut(s) | 4, 238, 675, 1369, 1641, 2436, 2716, 3379 |
| DraIII | CACNNNGTG | 1 cut(s) | 1088 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 3209 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 3209 |
| EaeI | YGGCCR | 6 cut(s) | 903, 2278, 2967, 2995, 3109, 3183 |
| Eam1104I | CTCTTC | 7 cut(s) | 170, 447, 681, 1200, 1318, 1564, 2948 |
| EarI | CTCTTC | 7 cut(s) | 170, 447, 681, 1200, 1318, 1564, 2948 |
| Ecl136II | GAGCTC | 1 cut(s) | 405 |
| Eco130I | CCWWGG | 7 cut(s) | 1168, 1222, 1481, 2275, 2583, 2978, 3432 |
| Eco24I | GRGCYC | 4 cut(s) | 407, 1665, 2114, 3328 |
| Eco31I | GGTCTC | 1 cut(s) | 3422 |
| Eco47I | GGWCC | 3 cut(s) | 792, 2180, 3522 |
| Eco53kI | GAGCTC | 1 cut(s) | 405 |
| Eco57I | CTGAAG | 4 cut(s) | 737, 1434, 2418, 3672 |
| Eco88I | CYCGRG | 1 cut(s) | 2057 |
| EcoICRI | GAGCTC | 1 cut(s) | 405 |
| EcoO109I | RGGNCCY | 1 cut(s) | 3522 |
| EcoT14I | CCWWGG | 7 cut(s) | 1168, 1222, 1481, 2275, 2583, 2978, 3432 |
| EcoT38I | GRGCYC | 4 cut(s) | 407, 1665, 2114, 3328 |
| ErhI | CCWWGG | 7 cut(s) | 1168, 1222, 1481, 2275, 2583, 2978, 3432 |
| FaqI | GGGAC | 5 cut(s) | 805, 1585, 2017, 3407, 3508 |
| FauI | CCCGC | 2 cut(s) | 2247, 3533 |
| FbaI | TGATCA | 3 cut(s) | 238, 1369, 3379 |
| FokI | GGATG | 5 cut(s) | 470, 632, 1037, 2206, 3647 |
| FriOI | GRGCYC | 4 cut(s) | 407, 1665, 2114, 3328 |
| FspBI | CTAG | 7 cut(s) | 1482, 1731, 1766, 1791, 2546, 2984, 3200 |
| GlaI | GCGC | 3 cut(s) | 552, 929, 3274 |
| GsaI | CCCAGC | 1 cut(s) | 3408 |
| GsuI | CTGGAG | 2 cut(s) | 1220, 1941 |
| HaeII | RGCGCY | 1 cut(s) | 931 |
| HapII | CCGG | 3 cut(s) | 162, 803, 2744 |
| HgaI | GACGC | 2 cut(s) | 1352, 2469 |
| HhaI | GCGC | 3 cut(s) | 553, 930, 3275 |
| Hin6I | GCGC | 3 cut(s) | 551, 928, 3273 |
| HinP1I | GCGC | 3 cut(s) | 551, 928, 3273 |
| HindIII | AAGCTT | 1 cut(s) | 2723 |
| HpaII | CCGG | 3 cut(s) | 162, 803, 2744 |
| Hpy166II | GTNNAC | 5 cut(s) | 967, 1493, 2459, 3041, 3605 |
| Hpy8I | GTNNAC | 5 cut(s) | 967, 1493, 2459, 3041, 3605 |
| Hpy99I | CGWCG | 2 cut(s) | 558, 3053 |
| HpyAV | CCTTC | 9 cut(s) | 44, 383, 473, 698, 952, 1207, 1465, 3394, 3647 |
| HpyCH4III | ACNGT | 7 cut(s) | 172, 184, 911, 1497, 2043, 2701, 3319 |
| HpyCH4IV | ACGT | 9 cut(s) | 211, 354, 556, 1035, 2288, 3030, 3193, 3204, 3375 |
| HpySE526I | ACGT | 9 cut(s) | 211, 354, 556, 1035, 2288, 3030, 3193, 3204, 3375 |
| HspAI | GCGC | 3 cut(s) | 551, 928, 3273 |
| Ksp22I | TGATCA | 3 cut(s) | 238, 1369, 3379 |
| Kzo9I | GATC | 8 cut(s) | 4, 238, 675, 1369, 1641, 2436, 2716, 3379 |
| LguI | GCTCTTC | 2 cut(s) | 1318, 2948 |
| LmnI | GCTCC | 5 cut(s) | 1510, 2594, 2665, 2866, 3249 |
| LweI | GCATC | 5 cut(s) | 1087, 1180, 1965, 3017, 3214 |
| MaeI | CTAG | 7 cut(s) | 1482, 1731, 1766, 1791, 2546, 2984, 3200 |
| MaeII | ACGT | 9 cut(s) | 211, 354, 556, 1035, 2288, 3030, 3193, 3204, 3375 |
| MaeIII | GTNAC | 3 cut(s) | 119, 1027, 2128 |
| MalI | GATC | 8 cut(s) | 6, 240, 677, 1371, 1643, 2438, 2718, 3381 |
| MbiI | CCGCTC | 2 cut(s) | 2254, 3564 |
| MboI | GATC | 8 cut(s) | 4, 238, 675, 1369, 1641, 2436, 2716, 3379 |
| MfeI | CAATTG | 3 cut(s) | 1143, 2013, 2190 |
| MflI | RGATCY | 2 cut(s) | 4, 1641 |
| MhlI | GDGCHC | 7 cut(s) | 407, 1665, 2114, 2267, 3246, 3328, 3370 |
| MlsI | TGGCCA | 3 cut(s) | 905, 2969, 3111 |
| MluNI | TGGCCA | 3 cut(s) | 905, 2969, 3111 |
| MlyI | GAGTC | 5 cut(s) | 335, 1567, 2657, 2760, 3451 |
| MmeI | TCCRAC | 4 cut(s) | 350, 1601, 2683, 3169 |
| Mox20I | TGGCCA | 3 cut(s) | 905, 2969, 3111 |
| MroXI | GAANNNNTTC | 3 cut(s) | 77, 708, 3644 |
| MscI | TGGCCA | 3 cut(s) | 905, 2969, 3111 |
| MslI | CAYNNNNRTG | 3 cut(s) | 1377, 1998, 2280 |
| Msp20I | TGGCCA | 3 cut(s) | 905, 2969, 3111 |
| MspA1I | CMGCKG | 3 cut(s) | 1000, 3416, 3458 |
| MspI | CCGG | 3 cut(s) | 162, 803, 2744 |
| MunI | CAATTG | 3 cut(s) | 1143, 2013, 2190 |
| Mva1269I | GAATGC | 3 cut(s) | 893, 1009, 2512 |
| MvnI | CGCG | 3 cut(s) | 325, 553, 1346 |
| NciI | CCSGG | 1 cut(s) | 2744 |
| NcoI | CCATGG | 3 cut(s) | 2275, 2583, 2978 |
| NdeII | GATC | 8 cut(s) | 4, 238, 675, 1369, 1641, 2436, 2716, 3379 |
| NheI | GCTAGC | 1 cut(s) | 2983 |
| NlaIV | GGNNCC | 5 cut(s) | 445, 492, 793, 3438, 3524 |
| NmuCI | GTSAC | 1 cut(s) | 2128 |
| NspI | RCATGY | 3 cut(s) | 159, 1867, 3273 |
| NspV | TTCGAA | 1 cut(s) | 3034 |
| PaeI | GCATGC | 1 cut(s) | 3273 |
| PaeR7I | CTCGAG | 1 cut(s) | 2057 |
| PagI | TCATGA | 4 cut(s) | 394, 1372, 1722, 2694 |
| PaqCI | CACCTGC | 1 cut(s) | 1165 |
| PciI | ACATGT | 1 cut(s) | 1863 |
| PciSI | GCTCTTC | 2 cut(s) | 1318, 2948 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 2278 |
| PctI | GAATGC | 3 cut(s) | 893, 1009, 2512 |
| PdmI | GAANNNNTTC | 3 cut(s) | 77, 708, 3644 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 2314, 2669 |
| PfoI | TCCNGGA | 2 cut(s) | 1918, 2307 |
| PleI | GAGTC | 5 cut(s) | 335, 1567, 2656, 2760, 3450 |
| PpsI | GAGTC | 5 cut(s) | 335, 1567, 2656, 2760, 3450 |
| PpuMI | RGGWCCY | 1 cut(s) | 3522 |
| PscI | ACATGT | 1 cut(s) | 1863 |
| Psp124BI | GAGCTC | 1 cut(s) | 407 |
| Psp5II | RGGWCCY | 1 cut(s) | 3522 |
| PspFI | CCCAGC | 1 cut(s) | 3404 |
| PspN4I | GGNNCC | 5 cut(s) | 445, 492, 793, 3438, 3524 |
| PspPI | GGNCC | 7 cut(s) | 792, 1623, 1692, 1967, 2180, 2683, 3522 |
| PspPPI | RGGWCCY | 1 cut(s) | 3522 |
| PspXI | VCTCGAGB | 1 cut(s) | 2057 |
| PstI | CTGCAG | 7 cut(s) | 618, 988, 1567, 2230, 2241, 3280, 3450 |
| PstNI | CAGNNNCTG | 4 cut(s) | 602, 1597, 2627, 3461 |
| PsuI | RGATCY | 2 cut(s) | 4, 1641 |
| PvuII | CAGCTG | 2 cut(s) | 1000, 3458 |
| RsaI | GTAC | 3 cut(s) | 565, 1943, 1998 |
| RsaNI | GTAC | 3 cut(s) | 564, 1942, 1997 |
| RseI | CAYNNNNRTG | 3 cut(s) | 1377, 1998, 2280 |
| SacI | GAGCTC | 1 cut(s) | 407 |
| SapI | GCTCTTC | 2 cut(s) | 1318, 2948 |
| Sau3AI | GATC | 8 cut(s) | 4, 238, 675, 1369, 1641, 2436, 2716, 3379 |
| Sau96I | GGNCC | 7 cut(s) | 792, 1623, 1692, 1967, 2180, 2683, 3522 |
| SbfI | CCTGCAGG | 1 cut(s) | 618 |
| SchI | GAGTC | 5 cut(s) | 335, 1567, 2657, 2760, 3451 |
| SdaI | CCTGCAGG | 1 cut(s) | 618 |
| SduI | GDGCHC | 7 cut(s) | 407, 1665, 2114, 2267, 3246, 3328, 3370 |
| SfaNI | GCATC | 5 cut(s) | 1087, 1180, 1965, 3017, 3214 |
| Sfr274I | CTCGAG | 1 cut(s) | 2057 |
| SfuI | TTCGAA | 1 cut(s) | 3034 |
| SinI | GGWCC | 3 cut(s) | 792, 2180, 3522 |
| SlaI | CTCGAG | 1 cut(s) | 2057 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 1377, 1998, 2280 |
| SmlI | CTYRAG | 3 cut(s) | 1073, 1750, 2057 |
| SmoI | CTYRAG | 3 cut(s) | 1073, 1750, 2057 |
| SpeI | ACTAGT | 1 cut(s) | 1730 |
| SphI | GCATGC | 1 cut(s) | 3273 |
| Sse8387I | CCTGCAGG | 1 cut(s) | 618 |
| SsiI | CCGC | 8 cut(s) | 76, 325, 1695, 2254, 2994, 3416, 3526, 3564 |
| SspI | AATATT | 1 cut(s) | 2517 |
| SspMI | CTAG | 7 cut(s) | 1482, 1731, 1766, 1791, 2546, 2984, 3200 |
| SstI | GAGCTC | 1 cut(s) | 407 |
| StyI | CCWWGG | 7 cut(s) | 1168, 1222, 1481, 2275, 2583, 2978, 3432 |
| TaaI | ACNGT | 7 cut(s) | 172, 184, 911, 1497, 2043, 2701, 3319 |
| TaiI | ACGT | 9 cut(s) | 214, 357, 559, 1038, 2291, 3033, 3196, 3207, 3378 |
| TaqII | GACCGA | 1 cut(s) | 809 |
| TatI | WGTACW | 1 cut(s) | 1996 |
| TauI | GCSGC | 2 cut(s) | 1697, 2997 |
| TscAI | CASTG | 6 cut(s) | 52, 916, 2230, 2538, 3655, 3666 |
| TseFI | GTSAC | 1 cut(s) | 2128 |
| Tsp45I | GTSAC | 1 cut(s) | 2128 |
| TspGWI | ACGGA | 4 cut(s) | 3138, 3597, 3606, 3647 |
| TspRI | CASTG | 6 cut(s) | 52, 916, 2230, 2538, 3655, 3666 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 2314, 2669 |
| VpaK11BI | GGWCC | 3 cut(s) | 792, 2180, 3522 |
| XbaI | TCTAGA | 1 cut(s) | 3199 |
| XceI | RCATGY | 3 cut(s) | 159, 1867, 3273 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 538 |
| XhoI | CTCGAG | 1 cut(s) | 2057 |
| XmaJI | CCTAGG | 1 cut(s) | 1481 |
| XmnI | GAANNNNTTC | 3 cut(s) | 77, 708, 3644 |
| XspI | CTAG | 7 cut(s) | 1482, 1731, 1766, 1791, 2546, 2984, 3200 |