Rorug01G0237300
MYB Family

) efflux antiporter

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
Physical Location & Seq
Forward (+)
34192837 .. 34196359
3523 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0237300.1

Sequence Viewer

Length: 354 bp
ATGACGAAAAGCACCTTTAAGCAAGCACACGAGTTTGAGAAGAGGCGTGCTGAGGCCTCGAGGATTAGAGAGAAGTACCCAGATAGAATTCCAGTGATTGTGGAGAAGGCAGAGAGAAGTGATATTCCCAACATTGACAAGAAAAAATACCTAGTACCAGCTGATTTGACTGTTGGTCAATTTGTCTATGTCATCCGCAAGAGAATCAAACTGAGTGCAGAAAAGGCCATCTTCATATTTGTGGACAATGTCCTCCCACCTACAGGAGCAGTAATGTCTACTATCTATGATGAAAAGAAGGATGGTGATGGATTTCTATACGTTTCATACAGTGGTGAAAACACATTCGGGTAG

Protein Analysis

117

Amino Acids

13.42

Weight (kDa)

9.27

Isoelectric Point (pI)

34.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ATG8 PF02991 14 - 117 5e-50 Autophagy protein Atg8 ubiquitin like
APG12 PF04110 40 - 117 6e-07 Ubiquitin-like autophagy protein Apg12
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000468)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g04030 FvH4_2g09411 FvH4_3g15551 FvH4_3g36421 FvH4_4g11701 FvH4_5g36381 FvH4_6g09143 FvH4_6g09144 FvH4_6g21972
malus_domestica MD00G1096500.v1.1 MD00G1122500.v1.1 MD02G1090600.v1.1 MD02G1173300.v1.1 MD05G1202800.v1.1 MD14G1123600.v1.1
prunus_persica Prupe.1G083600_v2.0.a1 Prupe.1G245300_v2.0.a1 Prupe.5G002100_v2.0.a1 Prupe.6G061200_v2.0.a1
pyrus_communis pycom01g07060 pycom02g13920 pycom04g11780 pycom04g13480 pycom04g21940 pycom06g07950 pycom07g03740 pycom07g03980 pycom09g02010 pycom09g02020 pycom09g11510 pycom09g14260 pycom10g02500 pycom10g15690 pycom12g08730 pycom12g08740 pycom14g19840 pycom15g16780 pycom15g24940 pycom15g25660 pycom16g21630 pycom16g26320
rosa_chinensis RchiOBHm_Chr1g0330371 RchiOBHm_Chr1g0331991 RchiOBHm_Chr6g0300321
rosa_laevigata RLG00000013795
rosa_multiflora Rmu_sc0000060.1_g000010 Rmu_sc0000288.1_g000044 Rmu_sc0002219.1_g000002 Rmu_sc0003995.1_g000003
rosa_roxburghii Rroxscaffold_1G00059020 Rroxscaffold_2G00108450 Rroxscaffold_2G00112460 Rroxscaffold_5G00375700 Rroxscaffold_5G00381640 Rroxscaffold_7G00158590
rosa_rugosa Rorug01G0237300 Rorug01G0237400 Rorug01G0237500 Rorug02G0051900 Rorug03G0260600 Rorug03G0285800 Rorug04G0076800 Rorug04G0162600 Rorug07G0264500 Rorug07G0264500
rosa_samantha Rh2DG003500 Rh3CG244800 Rh4CG334200 Rh5AG318300 Rh5BG549000 Rh7AG126400 Rh7CG118500 Rh7CG154500 Rh7DG025400
rosa_wichuraiana Rw1G026390 Rw2G005400 Rw2G034490 Rw3G019530 Rw3G028000 Rw4G010490 Rw5G010830 Rw5G023340 Rw5G026580 Rw5G041150 Rw6G003010 Rw6G003290 Rw6G010630 Rw6G021220 Rw6G035650 Rw7G014310

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 58
AccI GTMKAC 1 cut(s) 278
AciI CCGC 1 cut(s) 196
AcsI RAATTY 1 cut(s) 87
AfaI GTAC 2 cut(s) 77, 156
AfiI CCNNNNNNNGG 1 cut(s) 263
AhdI GACNNNNNGTC 1 cut(s) 174
AluBI AGCT 1 cut(s) 161
AluI AGCT 1 cut(s) 161
Ama87I CYCGRG 1 cut(s) 58
AoxI GGCC 2 cut(s) 54, 225
ApoI RAATTY 1 cut(s) 87
AsuHPI GGTGA 2 cut(s) 317, 347
AvaI CYCGRG 1 cut(s) 58
BauI CACGAG 1 cut(s) 29
BbvCI CCTCAGC 1 cut(s) 51
BccI CCATC 3 cut(s) 236, 296, 302
BfaI CTAG 1 cut(s) 152
BfmI CTRYAG 1 cut(s) 261
BmeRI GACNNNNNGTC 1 cut(s) 174
BmeT110I CYCGRG 1 cut(s) 58
Bpu10I CCTNAGC 1 cut(s) 51
Bsc4I CCNNNNNNNGG 1 cut(s) 263
Bse1I ACTGG 1 cut(s) 92
BseGI GGATG 2 cut(s) 192, 307
BseLI CCNNNNNNNGG 1 cut(s) 263
BseMII CTCAG 2 cut(s) 42, 203
BseNI ACTGG 1 cut(s) 92
BsgI GTGCAG 1 cut(s) 237
BshFI GGCC 2 cut(s) 56, 227
BsiHKCI CYCGRG 1 cut(s) 58
BslI CCNNNNNNNGG 1 cut(s) 263
BsnI GGCC 2 cut(s) 56, 227
BsoBI CYCGRG 1 cut(s) 58
BspACI CCGC 1 cut(s) 196
BspANI GGCC 2 cut(s) 56, 227
BspCNI CTCAG 2 cut(s) 43, 204
BsrI ACTGG 1 cut(s) 92
BssSI CACGAG 1 cut(s) 29
Bst2BI CACGAG 1 cut(s) 29
Bst4CI ACNGT 2 cut(s) 172, 332
Bst6I CTCTTC 1 cut(s) 35
BstC8I GCNNGC 2 cut(s) 24, 48
BstDEI CTNAG 2 cut(s) 51, 212
BstF5I GGATG 2 cut(s) 192, 307
BstMWI GCNNNNNNNGC 1 cut(s) 224
BstSFI CTRYAG 1 cut(s) 261
BsuRI GGCC 2 cut(s) 56, 227
BtsCI GGATG 2 cut(s) 192, 307
BtsIMutI CAGTG 2 cut(s) 99, 337
Cac8I GCNNGC 2 cut(s) 24, 48
Csp6I GTAC 2 cut(s) 76, 155
CviJI RGCY 3 cut(s) 56, 161, 227
CviKI_1 RGCY 3 cut(s) 56, 161, 227
CviQI GTAC 2 cut(s) 76, 155
DdeI CTNAG 2 cut(s) 51, 212
DriI GACNNNNNGTC 1 cut(s) 174
Eam1104I CTCTTC 1 cut(s) 35
Eam1105I GACNNNNNGTC 1 cut(s) 174
EarI CTCTTC 1 cut(s) 35
Eco147I AGGCCT 1 cut(s) 56
Eco88I CYCGRG 1 cut(s) 58
EcoRI GAATTC 1 cut(s) 87
FaiI YATR 5 cut(s) 189, 236, 288, 319, 328
FalI AAGNNNNNCTT 2 cut(s) 215, 247
FblI GTMKAC 1 cut(s) 278
FokI GGATG 2 cut(s) 179, 314
FspBI CTAG 1 cut(s) 152
HaeIII GGCC 2 cut(s) 56, 227
HinfI GANTC 1 cut(s) 204
HphI GGTGA 2 cut(s) 317, 347
Hpy166II GTNNAC 2 cut(s) 244, 279
Hpy8I GTNNAC 2 cut(s) 244, 279
HpyAV CCTTC 2 cut(s) 100, 292
HpyCH4III ACNGT 2 cut(s) 172, 332
HpyCH4IV ACGT 1 cut(s) 321
HpyCH4V TGCA 1 cut(s) 218
HpyF10VI GCNNNNNNNGC 1 cut(s) 224
HpyF3I CTNAG 2 cut(s) 51, 212
HpySE526I ACGT 1 cut(s) 321
LmnI GCTCC 1 cut(s) 266
LpnPI CCDG 4 cut(s) 93, 105, 171, 249
MaeI CTAG 1 cut(s) 152
MaeII ACGT 1 cut(s) 321
MboII GAAGA 2 cut(s) 52, 223
MluCI AATT 2 cut(s) 87, 179
MnlI CCTC 5 cut(s) 36, 46, 54, 67, 263
MseI TTAA 1 cut(s) 18
MslI CAYNNNNRTG 1 cut(s) 239
MspA1I CMGCKG 1 cut(s) 161
MwoI GCNNNNNNNGC 1 cut(s) 224
PaeR7I CTCGAG 1 cut(s) 58
PceI AGGCCT 1 cut(s) 56
PfeI GAWTC 1 cut(s) 204
PflFI GACNNNGTC 1 cut(s) 248
PspXI VCTCGAGB 1 cut(s) 58
PsyI GACNNNGTC 1 cut(s) 248
PvuII CAGCTG 1 cut(s) 161
RsaI GTAC 2 cut(s) 77, 156
RsaNI GTAC 2 cut(s) 76, 155
RseI CAYNNNNRTG 1 cut(s) 239
SaqAI TTAA 1 cut(s) 18
SetI ASST 5 cut(s) 17, 153, 163, 262, 324
SfcI CTRYAG 1 cut(s) 261
Sfr274I CTCGAG 1 cut(s) 58
SlaI CTCGAG 1 cut(s) 58
SmiMI CAYNNNNRTG 1 cut(s) 239
SmlI CTYRAG 1 cut(s) 58
SmoI CTYRAG 1 cut(s) 58
Sse9I AATT 2 cut(s) 87, 179
SseBI AGGCCT 1 cut(s) 56
SsiI CCGC 1 cut(s) 196
SspMI CTAG 1 cut(s) 152
StuI AGGCCT 1 cut(s) 56
TaaI ACNGT 2 cut(s) 172, 332
TaiI ACGT 1 cut(s) 324
TaqI TCGA 1 cut(s) 59
TasI AATT 2 cut(s) 87, 179
TfiI GAWTC 1 cut(s) 204
Tru1I TTAA 1 cut(s) 18
Tru9I TTAA 1 cut(s) 18
TscAI CASTG 2 cut(s) 99, 337
TspDTI ATGAA 3 cut(s) 223, 306, 315
TspRI CASTG 2 cut(s) 99, 337
Tth111I GACNNNGTC 1 cut(s) 248
XapI RAATTY 1 cut(s) 87
XhoI CTCGAG 1 cut(s) 58
XmiI GTMKAC 1 cut(s) 278
XspI CTAG 1 cut(s) 152
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.