Rw2G034490
ERF Family

DDE superfamily endonuclease

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0000468
Physical Location & Seq
Forward (+)
56791494 .. 56792807
1314 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G034490.1

Sequence Viewer

Length: 723 bp
ATGATTGCTTTAATAATAGAGTGGTATCATAAGACATTTTTTGTTAAAGAGCCTTCACGTGATTGGGGTCAAGAAAGACGGTCTTACTTAAACTGTTTGTACGATGGAAGAGAGGTAGATTGTATTGAACAACTACGAGTCAGCAAGAGCGCATTTAGGAAGTTATGTGAGATTTTACATGGAATAGGTGGGCTAGTTCGTACAAGAAATATTCCTATTGAAGAATCAGTAGCTATGTTTCTGGACATACTTTGTAACAACGTGAAGTACAGAAAAATTGGTTTTATATATTATCGTTCTAAGGAAACAGTTAGTCGGCAATTCCATAATGTGCTATACGCAATGATGAGAATCAGTAAGGAATACTTGAAATTACAGTCATCTATCATTGAAGCACTTGATGGAACTCACATTCCAGTGACTGTGTCAGCTAAGGAAAGACCAAGATATCGAAATAGAAAGGGTGATATTTCTACTAACGTCCTAGGGGGTTCTGCTTCTGATGCTCGTGTTTTACGAGATGCTCTACGTAGAAATAATCGGCTTCATGTTCCACGGGCAACGGTTGATTTGGAGATATTAAATTGTCCAACGTCAGAGAGTAATGCAAATAATTTAAATGATAGGATTACATCAATTCAAGCAACTGAGCAATGGACAAATTTTCGTGATACATTTGCATTGAAGATGGTCCAGGATTATCAAGCGCGACATGCCACATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DDE_Tnp_4

Protein Analysis

240

Amino Acids

27.9

Weight (kDa)

9.49

Isoelectric Point (pI)

52.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF8040 PF26138 27 - 116 2.1e-22 Domain of unknown function (DUF8040)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000468)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g04030 FvH4_2g09411 FvH4_3g15551 FvH4_3g36421 FvH4_4g11701 FvH4_5g36381 FvH4_6g09143 FvH4_6g09144 FvH4_6g21972
malus_domestica MD00G1096500.v1.1 MD00G1122500.v1.1 MD02G1090600.v1.1 MD02G1173300.v1.1 MD05G1202800.v1.1 MD14G1123600.v1.1
prunus_persica Prupe.1G083600_v2.0.a1 Prupe.1G245300_v2.0.a1 Prupe.5G002100_v2.0.a1 Prupe.6G061200_v2.0.a1
pyrus_communis pycom01g07060 pycom02g13920 pycom04g11780 pycom04g13480 pycom04g21940 pycom06g07950 pycom07g03740 pycom07g03980 pycom09g02010 pycom09g02020 pycom09g11510 pycom09g14260 pycom10g02500 pycom10g15690 pycom12g08730 pycom12g08740 pycom14g19840 pycom15g16780 pycom15g24940 pycom15g25660 pycom16g21630 pycom16g26320
rosa_chinensis RchiOBHm_Chr1g0330371 RchiOBHm_Chr1g0331991 RchiOBHm_Chr6g0300321
rosa_laevigata RLG00000013795
rosa_multiflora Rmu_sc0000060.1_g000010 Rmu_sc0000288.1_g000044 Rmu_sc0002219.1_g000002 Rmu_sc0003995.1_g000003
rosa_roxburghii Rroxscaffold_1G00059020 Rroxscaffold_2G00108450 Rroxscaffold_2G00112460 Rroxscaffold_5G00375700 Rroxscaffold_5G00381640 Rroxscaffold_7G00158590
rosa_rugosa Rorug01G0237300 Rorug01G0237400 Rorug01G0237500 Rorug02G0051900 Rorug03G0260600 Rorug03G0285800 Rorug04G0076800 Rorug04G0162600 Rorug07G0264500 Rorug07G0264500
rosa_samantha Rh2DG003500 Rh3CG244800 Rh4CG334200 Rh5AG318300 Rh5BG549000 Rh7AG126400 Rh7CG118500 Rh7CG154500 Rh7DG025400
rosa_wichuraiana Rw1G026390 Rw2G005400 Rw2G034490 Rw3G019530 Rw3G028000 Rw4G010490 Rw5G010830 Rw5G023340 Rw5G026580 Rw5G041150 Rw6G003010 Rw6G003290 Rw6G010630 Rw6G021220 Rw6G035650 Rw7G014310

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 709
AcsI RAATTY 1 cut(s) 661
AcvI CACGTG 1 cut(s) 59
AfaI GTAC 3 cut(s) 101, 202, 269
AgsI TTSAA 6 cut(s) 128, 221, 370, 392, 641, 685
AjnI CCWGG 1 cut(s) 693
AloI GAACNNNNNNTCC 2 cut(s) 397, 429
AluBI AGCT 2 cut(s) 233, 431
AluI AGCT 2 cut(s) 233, 431
AlwNI CAGNNNCTG 1 cut(s) 422
ApoI RAATTY 1 cut(s) 661
AspA2I CCTAGG 1 cut(s) 484
AspLEI GCGC 2 cut(s) 152, 709
AspS9I GGNCC 1 cut(s) 691
AsuHPI GGTGA 1 cut(s) 476
AvaII GGWCC 1 cut(s) 691
AvrII CCTAGG 1 cut(s) 484
BauI CACGAG 1 cut(s) 507
BbrPI CACGTG 1 cut(s) 59
BccI CCATC 3 cut(s) 98, 395, 682
BciT130I CCWGG 1 cut(s) 695
BfaI CTAG 2 cut(s) 194, 485
BlnI CCTAGG 1 cut(s) 484
Bme1390I CCNGG 1 cut(s) 695
Bme18I GGWCC 1 cut(s) 691
BmgT120I GGNCC 1 cut(s) 691
BmrFI CCNGG 1 cut(s) 695
BmsI GCATC 2 cut(s) 493, 511
Bpu10I CCTNAGC 1 cut(s) 432
BsaAI YACGTR 2 cut(s) 59, 530
BsaBI GATNNNNATC 1 cut(s) 350
BsaJI CCNNGG 2 cut(s) 484, 554
Bse1I ACTGG 1 cut(s) 416
Bse3DI GCAATG 2 cut(s) 348, 659
Bse8I GATNNNNATC 1 cut(s) 350
BseBI CCWGG 1 cut(s) 695
BseDI CCNNGG 2 cut(s) 484, 554
BseJI GATNNNNATC 1 cut(s) 350
BseMI GCAATG 2 cut(s) 348, 659
BseMII CTCAG 1 cut(s) 639
BseNI ACTGG 1 cut(s) 416
Bsh1236I CGCG 1 cut(s) 709
BspCNI CTCAG 1 cut(s) 640
BspFNI CGCG 1 cut(s) 709
BsrDI GCAATG 2 cut(s) 348, 659
BsrI ACTGG 1 cut(s) 416
BssECI CCNNGG 2 cut(s) 484, 554
BssSI CACGAG 1 cut(s) 507
BssT1I CCWWGG 1 cut(s) 484
Bst2BI CACGAG 1 cut(s) 507
Bst2UI CCWGG 1 cut(s) 695
Bst4CI ACNGT 6 cut(s) 81, 95, 310, 378, 424, 565
Bst6I CTCTTC 1 cut(s) 103
BstBAI YACGTR 2 cut(s) 59, 530
BstDEI CTNAG 3 cut(s) 300, 432, 648
BstDSI CCRYGG 1 cut(s) 554
BstFNI CGCG 1 cut(s) 709
BstHHI GCGC 2 cut(s) 152, 709
BstMWI GCNNNNNNNGC 2 cut(s) 503, 713
BstNI CCWGG 1 cut(s) 695
BstNSI RCATGY 1 cut(s) 716
BstSCI CCNGG 1 cut(s) 693
BstSNI TACGTA 1 cut(s) 530
BstUI CGCG 1 cut(s) 709
BtgI CCRYGG 1 cut(s) 554
BtsIMutI CAGTG 1 cut(s) 423
CaiI CAGNNNCTG 1 cut(s) 422
CfoI GCGC 2 cut(s) 152, 709
Cfr13I GGNCC 1 cut(s) 691
Csp6I GTAC 3 cut(s) 100, 201, 268
CviAII CATG 3 cut(s) 179, 548, 713
CviJI RGCY 5 cut(s) 52, 193, 233, 431, 544
CviKI_1 RGCY 5 cut(s) 52, 193, 233, 431, 544
CviQI GTAC 3 cut(s) 100, 201, 268
DdeI CTNAG 3 cut(s) 300, 432, 648
DraI TTTAAA 1 cut(s) 618
Eam1104I CTCTTC 1 cut(s) 103
EarI CTCTTC 1 cut(s) 103
Eco105I TACGTA 1 cut(s) 530
Eco130I CCWWGG 1 cut(s) 484
Eco32I GATATC 1 cut(s) 449
Eco47I GGWCC 1 cut(s) 691
Eco72I CACGTG 1 cut(s) 59
EcoRII CCWGG 1 cut(s) 693
EcoRV GATATC 1 cut(s) 449
EcoT14I CCWWGG 1 cut(s) 484
ErhI CCWWGG 1 cut(s) 484
FaeI CATG 3 cut(s) 182, 551, 716
FalI AAGNNNNNCTT 4 cut(s) 67, 99, 350, 382
FatI CATG 3 cut(s) 178, 547, 712
FspBI CTAG 2 cut(s) 194, 485
GlaI GCGC 2 cut(s) 151, 708
HhaI GCGC 2 cut(s) 152, 709
Hin1II CATG 3 cut(s) 182, 551, 716
Hin6I GCGC 2 cut(s) 150, 707
HinP1I GCGC 2 cut(s) 150, 707
HinfI GANTC 3 cut(s) 138, 224, 351
HphI GGTGA 1 cut(s) 476
Hpy188I TCNGA 2 cut(s) 502, 598
Hpy188III TCNNGA 3 cut(s) 71, 242, 668
HpyAV CCTTC 1 cut(s) 63
HpyCH4III ACNGT 6 cut(s) 81, 95, 310, 378, 424, 565
HpyCH4IV ACGT 5 cut(s) 58, 261, 480, 529, 593
HpyCH4V TGCA 2 cut(s) 608, 680
HpyF10VI GCNNNNNNNGC 2 cut(s) 503, 713
HpyF3I CTNAG 3 cut(s) 300, 432, 648
HpySE526I ACGT 5 cut(s) 58, 261, 480, 529, 593
Hsp92II CATG 3 cut(s) 182, 551, 716
HspAI GCGC 2 cut(s) 150, 707
LpnPI CCDG 4 cut(s) 227, 429, 680, 707
LweI GCATC 2 cut(s) 493, 511
MaeI CTAG 2 cut(s) 194, 485
MaeII ACGT 5 cut(s) 58, 261, 480, 529, 593
MaeIII GTNAC 2 cut(s) 254, 418
MboII GAAGA 3 cut(s) 120, 233, 697
MluCI AATT 7 cut(s) 276, 320, 371, 583, 613, 636, 661
MlyI GAGTC 1 cut(s) 147
MmeI TCCRAC 1 cut(s) 614
MnlI CCTC 1 cut(s) 106
MseI TTAA 5 cut(s) 11, 45, 89, 581, 617
MslI CAYNNNNRTG 1 cut(s) 416
MspR9I CCNGG 1 cut(s) 695
MvaI CCWGG 1 cut(s) 695
MvnI CGCG 1 cut(s) 709
MwoI GCNNNNNNNGC 2 cut(s) 503, 713
NlaIII CATG 3 cut(s) 182, 551, 716
NmuCI GTSAC 1 cut(s) 418
NspI RCATGY 1 cut(s) 716
PcsI WCGNNNNNNNCGW 1 cut(s) 514
PfeI GAWTC 2 cut(s) 224, 351
PflFI GACNNNGTC 1 cut(s) 424
PfoI TCCNGGA 1 cut(s) 693
PleI GAGTC 1 cut(s) 146
PmaCI CACGTG 1 cut(s) 59
PmlI CACGTG 1 cut(s) 59
PpsI GAGTC 1 cut(s) 146
Ppu21I YACGTR 2 cut(s) 59, 530
Psp6I CCWGG 1 cut(s) 693
PspCI CACGTG 1 cut(s) 59
PspGI CCWGG 1 cut(s) 693
PspPI GGNCC 1 cut(s) 691
PstNI CAGNNNCTG 1 cut(s) 422
PsyI GACNNNGTC 1 cut(s) 424
RsaI GTAC 3 cut(s) 101, 202, 269
RsaNI GTAC 3 cut(s) 100, 201, 268
RseI CAYNNNNRTG 1 cut(s) 416
SaqAI TTAA 5 cut(s) 11, 45, 89, 581, 617
Sau96I GGNCC 1 cut(s) 691
SchI GAGTC 1 cut(s) 147
ScrFI CCNGG 1 cut(s) 695
SetI ASST 9 cut(s) 61, 117, 190, 235, 264, 433, 483, 532, 596
SfaNI GCATC 2 cut(s) 493, 511
SinI GGWCC 1 cut(s) 691
SmiI ATTTAAAT 1 cut(s) 618
SmiMI CAYNNNNRTG 1 cut(s) 416
SnaBI TACGTA 1 cut(s) 530
Sse9I AATT 7 cut(s) 276, 320, 371, 583, 613, 636, 661
SspI AATATT 1 cut(s) 211
SspMI CTAG 2 cut(s) 194, 485
StyD4I CCNGG 1 cut(s) 693
StyI CCWWGG 1 cut(s) 484
SwaI ATTTAAAT 1 cut(s) 618
TaaI ACNGT 6 cut(s) 81, 95, 310, 378, 424, 565
TaiI ACGT 5 cut(s) 61, 264, 483, 532, 596
TaqI TCGA 1 cut(s) 451
TasI AATT 7 cut(s) 276, 320, 371, 583, 613, 636, 661
TatI WGTACW 1 cut(s) 267
TfiI GAWTC 2 cut(s) 224, 351
Tru1I TTAA 5 cut(s) 11, 45, 89, 581, 617
Tru9I TTAA 5 cut(s) 11, 45, 89, 581, 617
TscAI CASTG 1 cut(s) 423
TseFI GTSAC 1 cut(s) 418
Tsp45I GTSAC 1 cut(s) 418
TspDTI ATGAA 1 cut(s) 536
TspRI CASTG 1 cut(s) 423
Tth111I GACNNNGTC 1 cut(s) 424
VpaK11BI GGWCC 1 cut(s) 691
XapI RAATTY 1 cut(s) 661
XceI RCATGY 1 cut(s) 716
XmaJI CCTAGG 1 cut(s) 484
XspI CTAG 2 cut(s) 194, 485
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.