Prupe.1G245300_v2.0.a1
ERF Family

DDE superfamily endonuclease

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0000468
Physical Location & Seq
Reverse (-)
25876459 .. 25877328
870 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G245300.1

Sequence Viewer

Length: 786 bp
ATGGCTACTGATGATGTAGATAATTTTCTTACACGTTTAAGTCGCAAGCGTGCTAGAGATGAAGAAGAAAATAGGGACAAAATGTCAATTATTCTTGGTACCATTACATCTGTCATTGCTATAGTTGTAGCATGGTATAATGAAACTTATCTAGTCAAAGAGCCTTCACGTGATTGGGATCAAGAAAGACGATGTTACTTGAACCGTCTATATAATGGGAGGGAGGTTGACTGTATTGAACAATTACGAGTTAGCAAGAATGCATTTAAAAGTTTATGCACTATTTTGCATGGGAAGGGTGGATTGACTCCAACAAGAAATGTTTCAATTGAAGAGTCTGTGGCTATTTTCTTAAATATACTTGCTCACAACTTGAAGTTTAGGGTCATTGGTTTTGATTATTATCGCTCTAAAGAAACAATTAGTCGACAATTTAATAGTGTGTTGCATGCTAGGATGAGAATAAGTGAAGAGTACTTGAAACTTCATCCATGTGCTATAAGTGGATCAGAAAGAGACAAGTGGAAGTGGTTTGAGAATTGTATAGGGGCACTAGATGGAACTCACTTTATCCGACTCGAGCAACATAATGACCTTGTGTTACAAGATCAAGATTTGGAGTTTTTAGCTTCTGTGGATCATGAGATATCAAATCATTCTACATTAGAGGGTAATGCAAATAGGATTACAAGTGTTCAAGTTACTGATCAGTGGACTACTTTCCGTGACACGTTAGCATTGCAGATGTTTCATGATTATCAAGCAAGAGGCACAACGATTTCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DDE_Tnp_4

Protein Analysis

262

Amino Acids

30.37

Weight (kDa)

6.15

Isoelectric Point (pI)

37.75

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000468)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g04030 FvH4_2g09411 FvH4_3g15551 FvH4_3g36421 FvH4_4g11701 FvH4_5g36381 FvH4_6g09143 FvH4_6g09144 FvH4_6g21972
malus_domestica MD00G1096500.v1.1 MD00G1122500.v1.1 MD02G1090600.v1.1 MD02G1173300.v1.1 MD05G1202800.v1.1 MD14G1123600.v1.1
prunus_persica Prupe.1G083600_v2.0.a1 Prupe.1G245300_v2.0.a1 Prupe.5G002100_v2.0.a1 Prupe.6G061200_v2.0.a1
pyrus_communis pycom01g07060 pycom02g13920 pycom04g11780 pycom04g13480 pycom04g21940 pycom06g07950 pycom07g03740 pycom07g03980 pycom09g02010 pycom09g02020 pycom09g11510 pycom09g14260 pycom10g02500 pycom10g15690 pycom12g08730 pycom12g08740 pycom14g19840 pycom15g16780 pycom15g24940 pycom15g25660 pycom16g21630 pycom16g26320
rosa_chinensis RchiOBHm_Chr1g0330371 RchiOBHm_Chr1g0331991 RchiOBHm_Chr6g0300321
rosa_laevigata RLG00000013795
rosa_multiflora Rmu_sc0000060.1_g000010 Rmu_sc0000288.1_g000044 Rmu_sc0002219.1_g000002 Rmu_sc0003995.1_g000003
rosa_roxburghii Rroxscaffold_1G00059020 Rroxscaffold_2G00108450 Rroxscaffold_2G00112460 Rroxscaffold_5G00375700 Rroxscaffold_5G00381640 Rroxscaffold_7G00158590
rosa_rugosa Rorug01G0237300 Rorug01G0237400 Rorug01G0237500 Rorug02G0051900 Rorug03G0260600 Rorug03G0285800 Rorug04G0076800 Rorug04G0162600 Rorug07G0264500 Rorug07G0264500
rosa_samantha Rh2DG003500 Rh3CG244800 Rh4CG334200 Rh5AG318300 Rh5BG549000 Rh7AG126400 Rh7CG118500 Rh7CG154500 Rh7DG025400
rosa_wichuraiana Rw1G026390 Rw2G005400 Rw2G034490 Rw3G019530 Rw3G028000 Rw4G010490 Rw5G010830 Rw5G023340 Rw5G026580 Rw5G041150 Rw6G003010 Rw6G003290 Rw6G010630 Rw6G021220 Rw6G035650 Rw7G014310

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 98
AccB1I GGYRCC 1 cut(s) 98
AccI GTMKAC 1 cut(s) 427
AclWI GGATC 3 cut(s) 186, 514, 645
AcvI CACGTG 1 cut(s) 170
AfaI GTAC 2 cut(s) 100, 476
AflIII ACRYGT 2 cut(s) 32, 729
AgsI TTSAA 7 cut(s) 202, 239, 327, 332, 376, 481, 698
AhdI GACNNNNNGTC 1 cut(s) 82
AluBI AGCT 1 cut(s) 629
AluI AGCT 1 cut(s) 629
Alw26I GTCTC 1 cut(s) 510
AlwI GGATC 3 cut(s) 186, 514, 645
Ama87I CYCGRG 1 cut(s) 578
Asp700I GAANNNNTTC 1 cut(s) 322
Asp718I GGTACC 1 cut(s) 98
AvaI CYCGRG 1 cut(s) 578
BaeGI GKGCMC 1 cut(s) 553
BanI GGYRCC 1 cut(s) 98
BbrPI CACGTG 1 cut(s) 170
BccI CCATC 1 cut(s) 551
BclI TGATCA 1 cut(s) 706
BcoDI GTCTC 1 cut(s) 510
BfaI CTAG 4 cut(s) 54, 152, 453, 554
BfmI CTRYAG 1 cut(s) 120
BmcAI AGTACT 1 cut(s) 476
BmeRI GACNNNNNGTC 1 cut(s) 82
BmeT110I CYCGRG 1 cut(s) 578
BmiI GGNNCC 1 cut(s) 100
BsaAI YACGTR 1 cut(s) 170
BsaBI GATNNNNATC 2 cut(s) 177, 402
Bse3DI GCAATG 2 cut(s) 114, 737
Bse8I GATNNNNATC 2 cut(s) 177, 402
BseGI GGATG 2 cut(s) 462, 487
BseJI GATNNNNATC 2 cut(s) 177, 402
BseMI GCAATG 2 cut(s) 114, 737
BseSI GKGCMC 1 cut(s) 553
BshNI GGYRCC 1 cut(s) 98
BsiHKCI CYCGRG 1 cut(s) 578
BslFI GGGAC 1 cut(s) 89
BsmAI GTCTC 1 cut(s) 510
BsmFI GGGAC 1 cut(s) 89
BsmI GAATGC 1 cut(s) 265
BsoBI CYCGRG 1 cut(s) 578
Bsp1286I GDGCHC 1 cut(s) 553
Bsp143I GATC 5 cut(s) 178, 506, 607, 637, 706
BspHI TCATGA 3 cut(s) 640, 751, 782
BspLI GGNNCC 1 cut(s) 100
BspPI GGATC 3 cut(s) 186, 514, 645
BspT107I GGYRCC 1 cut(s) 98
BsrDI GCAATG 2 cut(s) 114, 737
BssMI GATC 5 cut(s) 178, 506, 607, 637, 706
Bst4CI ACNGT 2 cut(s) 206, 233
Bst6I CTCTTC 2 cut(s) 327, 465
BstBAI YACGTR 1 cut(s) 170
BstC8I GCNNGC 3 cut(s) 47, 51, 450
BstF5I GGATG 2 cut(s) 462, 487
BstKTI GATC 5 cut(s) 181, 509, 610, 640, 709
BstMAI GTCTC 1 cut(s) 510
BstMBI GATC 5 cut(s) 178, 506, 607, 637, 706
BstNSI RCATGY 1 cut(s) 452
BstSFI CTRYAG 1 cut(s) 120
BstSLI GKGCMC 1 cut(s) 553
BtsCI GGATG 2 cut(s) 462, 487
BtsIMutI CAGTG 1 cut(s) 716
Cac8I GCNNGC 3 cut(s) 47, 51, 450
CciI TCATGA 3 cut(s) 640, 751, 782
Csp6I GTAC 2 cut(s) 99, 475
CviAII CATG 7 cut(s) 132, 290, 449, 492, 641, 752, 783
CviJI RGCY 4 cut(s) 5, 163, 344, 629
CviKI_1 RGCY 4 cut(s) 5, 163, 344, 629
CviQI GTAC 2 cut(s) 99, 475
DpnI GATC 5 cut(s) 180, 508, 609, 639, 708
DpnII GATC 5 cut(s) 178, 506, 607, 637, 706
DraI TTTAAA 1 cut(s) 268
DriI GACNNNNNGTC 1 cut(s) 82
Eam1104I CTCTTC 2 cut(s) 327, 465
Eam1105I GACNNNNNGTC 1 cut(s) 82
EarI CTCTTC 2 cut(s) 327, 465
Eco32I GATATC 1 cut(s) 648
Eco72I CACGTG 1 cut(s) 170
Eco88I CYCGRG 1 cut(s) 578
EcoRV GATATC 1 cut(s) 648
EcoT22I ATGCAT 1 cut(s) 265
FaeI CATG 7 cut(s) 135, 293, 452, 495, 644, 755, 786
FaqI GGGAC 1 cut(s) 89
FatI CATG 7 cut(s) 131, 289, 448, 491, 640, 751, 782
FbaI TGATCA 1 cut(s) 706
FblI GTMKAC 1 cut(s) 427
FokI GGATG 2 cut(s) 469, 474
FspBI CTAG 4 cut(s) 54, 152, 453, 554
Hin1II CATG 7 cut(s) 135, 293, 452, 495, 644, 755, 786
HincII GTYRAC 2 cut(s) 229, 428
HindII GTYRAC 2 cut(s) 229, 428
HinfI GANTC 3 cut(s) 307, 335, 576
Hpy166II GTNNAC 3 cut(s) 229, 428, 714
Hpy188I TCNGA 2 cut(s) 511, 575
Hpy188III TCNNGA 5 cut(s) 182, 611, 641, 752, 783
Hpy8I GTNNAC 3 cut(s) 229, 428, 714
HpyAV CCTTC 2 cut(s) 174, 289
HpyCH4III ACNGT 2 cut(s) 206, 233
HpyCH4IV ACGT 3 cut(s) 34, 169, 731
HpyCH4V TGCA 6 cut(s) 263, 279, 289, 448, 677, 742
HpySE526I ACGT 3 cut(s) 34, 169, 731
Hsp92II CATG 7 cut(s) 135, 293, 452, 495, 644, 755, 786
KpnI GGTACC 1 cut(s) 102
Ksp22I TGATCA 1 cut(s) 706
Kzo9I GATC 5 cut(s) 178, 506, 607, 637, 706
MaeI CTAG 4 cut(s) 54, 152, 453, 554
MaeII ACGT 3 cut(s) 34, 169, 731
MaeIII GTNAC 4 cut(s) 194, 600, 700, 725
MalI GATC 5 cut(s) 180, 508, 609, 639, 708
MboI GATC 5 cut(s) 178, 506, 607, 637, 706
MboII GAAGA 4 cut(s) 74, 77, 344, 482
MfeI CAATTG 1 cut(s) 327
MhlI GDGCHC 1 cut(s) 553
MluCI AATT 7 cut(s) 22, 87, 242, 327, 420, 431, 538
MlyI GAGTC 3 cut(s) 301, 344, 570
MmeI TCCRAC 2 cut(s) 335, 598
MnlI CCTC 4 cut(s) 213, 217, 661, 761
Mph1103I ATGCAT 1 cut(s) 265
MroXI GAANNNNTTC 1 cut(s) 322
MseI TTAA 4 cut(s) 38, 267, 353, 435
MslI CAYNNNNRTG 1 cut(s) 492
MunI CAATTG 1 cut(s) 327
Mva1269I GAATGC 1 cut(s) 265
NdeII GATC 5 cut(s) 178, 506, 607, 637, 706
NlaIII CATG 7 cut(s) 135, 293, 452, 495, 644, 755, 786
NlaIV GGNNCC 1 cut(s) 100
NmuCI GTSAC 1 cut(s) 725
NsiI ATGCAT 1 cut(s) 265
NspI RCATGY 1 cut(s) 452
PaeI GCATGC 1 cut(s) 452
PaeR7I CTCGAG 1 cut(s) 578
PagI TCATGA 3 cut(s) 640, 751, 782
PctI GAATGC 1 cut(s) 265
PdmI GAANNNNTTC 1 cut(s) 322
PleI GAGTC 3 cut(s) 301, 343, 570
PmaCI CACGTG 1 cut(s) 170
PmlI CACGTG 1 cut(s) 170
PpsI GAGTC 3 cut(s) 301, 343, 570
Ppu21I YACGTR 1 cut(s) 170
PspCI CACGTG 1 cut(s) 170
PspN4I GGNNCC 1 cut(s) 100
PspXI VCTCGAGB 1 cut(s) 578
RsaI GTAC 2 cut(s) 100, 476
RsaNI GTAC 2 cut(s) 99, 475
RseI CAYNNNNRTG 1 cut(s) 492
SalI GTCGAC 1 cut(s) 426
SaqAI TTAA 4 cut(s) 38, 267, 353, 435
Sau3AI GATC 5 cut(s) 178, 506, 607, 637, 706
ScaI AGTACT 1 cut(s) 476
SchI GAGTC 3 cut(s) 301, 344, 570
SduI GDGCHC 1 cut(s) 553
SetI ASST 6 cut(s) 37, 172, 228, 597, 631, 734
SfcI CTRYAG 1 cut(s) 120
Sfr274I CTCGAG 1 cut(s) 578
SlaI CTCGAG 1 cut(s) 578
SmiMI CAYNNNNRTG 1 cut(s) 492
SmlI CTYRAG 1 cut(s) 578
SmoI CTYRAG 1 cut(s) 578
SphI GCATGC 1 cut(s) 452
Sse9I AATT 7 cut(s) 22, 87, 242, 327, 420, 431, 538
SspMI CTAG 4 cut(s) 54, 152, 453, 554
TaaI ACNGT 2 cut(s) 206, 233
TaiI ACGT 3 cut(s) 37, 172, 734
TaqI TCGA 2 cut(s) 427, 579
TasI AATT 7 cut(s) 22, 87, 242, 327, 420, 431, 538
TatI WGTACW 1 cut(s) 474
Tru1I TTAA 4 cut(s) 38, 267, 353, 435
Tru9I TTAA 4 cut(s) 38, 267, 353, 435
TscAI CASTG 1 cut(s) 716
TseFI GTSAC 1 cut(s) 725
Tsp45I GTSAC 1 cut(s) 725
TspDTI ATGAA 5 cut(s) 75, 156, 476, 740, 771
TspGWI ACGGA 1 cut(s) 713
TspRI CASTG 1 cut(s) 716
XceI RCATGY 1 cut(s) 452
XhoI CTCGAG 1 cut(s) 578
XmiI GTMKAC 1 cut(s) 427
XmnI GAANNNNTTC 1 cut(s) 322
XspI CTAG 4 cut(s) 54, 152, 453, 554
ZrmI AGTACT 1 cut(s) 476
Zsp2I ATGCAT 1 cut(s) 265
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.