RchiOBHm_Chr1g0330371

Plant transposon protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0000468
Physical Location & Seq
Forward (+)
20094914 .. 20098235
3322 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ55957

Sequence Viewer

Length: 297 bp
ATGCGTACTCCATCATTTTTCAGCATCAAAACACAAGTTAGGATCATAAATGCTTGTTGTGTTTTGCACAATTTTATTCGAATTGAGCAAGCTAGTGATCCTGTTTTAGAAGATCAAGATTCAAGATTCTTAGTAGCGGTTGATTTGGAGATATTAAATCGTCCAACGTCAGAGAGTAATGCAAATAATTTAAATGATAGGATTACATCAGTTCAAGCAACTGAGCAGTGGACAAATTTTCGTGATACATTTGCATTGAAGATGTTCCAGGATTATCAAGCGCGACATGCCACATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DDE_Tnp_4

Protein Analysis

98

Amino Acids

11.36

Weight (kDa)

5.56

Isoelectric Point (pI)

42.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000468)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g04030 FvH4_2g09411 FvH4_3g15551 FvH4_3g36421 FvH4_4g11701 FvH4_5g36381 FvH4_6g09143 FvH4_6g09144 FvH4_6g21972
malus_domestica MD00G1096500.v1.1 MD00G1122500.v1.1 MD02G1090600.v1.1 MD02G1173300.v1.1 MD05G1202800.v1.1 MD14G1123600.v1.1
prunus_persica Prupe.1G083600_v2.0.a1 Prupe.1G245300_v2.0.a1 Prupe.5G002100_v2.0.a1 Prupe.6G061200_v2.0.a1
pyrus_communis pycom01g07060 pycom02g13920 pycom04g11780 pycom04g13480 pycom04g21940 pycom06g07950 pycom07g03740 pycom07g03980 pycom09g02010 pycom09g02020 pycom09g11510 pycom09g14260 pycom10g02500 pycom10g15690 pycom12g08730 pycom12g08740 pycom14g19840 pycom15g16780 pycom15g24940 pycom15g25660 pycom16g21630 pycom16g26320
rosa_chinensis RchiOBHm_Chr1g0330371 RchiOBHm_Chr1g0331991 RchiOBHm_Chr6g0300321
rosa_laevigata RLG00000013795
rosa_multiflora Rmu_sc0000060.1_g000010 Rmu_sc0000288.1_g000044 Rmu_sc0002219.1_g000002 Rmu_sc0003995.1_g000003
rosa_roxburghii Rroxscaffold_1G00059020 Rroxscaffold_2G00108450 Rroxscaffold_2G00112460 Rroxscaffold_5G00375700 Rroxscaffold_5G00381640 Rroxscaffold_7G00158590
rosa_rugosa Rorug01G0237300 Rorug01G0237400 Rorug01G0237500 Rorug02G0051900 Rorug03G0260600 Rorug03G0285800 Rorug04G0076800 Rorug04G0162600 Rorug07G0264500 Rorug07G0264500
rosa_samantha Rh2DG003500 Rh3CG244800 Rh4CG334200 Rh5AG318300 Rh5BG549000 Rh7AG126400 Rh7CG118500 Rh7CG154500 Rh7DG025400
rosa_wichuraiana Rw1G026390 Rw2G005400 Rw2G034490 Rw3G019530 Rw3G028000 Rw4G010490 Rw5G010830 Rw5G023340 Rw5G026580 Rw5G041150 Rw6G003010 Rw6G003290 Rw6G010630 Rw6G021220 Rw6G035650 Rw7G014310

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 283
AciI CCGC 1 cut(s) 137
AclWI GGATC 2 cut(s) 50, 92
AcsI RAATTY 1 cut(s) 235
AfaI GTAC 1 cut(s) 7
AgsI TTSAA 3 cut(s) 123, 215, 259
AjnI CCWGG 1 cut(s) 267
AluBI AGCT 1 cut(s) 92
AluI AGCT 1 cut(s) 92
AlwI GGATC 2 cut(s) 50, 92
ApoI RAATTY 1 cut(s) 235
Asp700I GAANNNNTTC 1 cut(s) 263
AspLEI GCGC 1 cut(s) 283
AsuII TTCGAA 1 cut(s) 79
BccI CCATC 1 cut(s) 19
BciT130I CCWGG 1 cut(s) 269
BfaI CTAG 1 cut(s) 93
Bme1390I CCNGG 1 cut(s) 269
BmrFI CCNGG 1 cut(s) 269
BmsI GCATC 1 cut(s) 33
Bpu14I TTCGAA 1 cut(s) 79
BseBI CCWGG 1 cut(s) 269
BseMII CTCAG 1 cut(s) 213
Bsh1236I CGCG 1 cut(s) 283
Bsp119I TTCGAA 1 cut(s) 79
Bsp143I GATC 3 cut(s) 42, 97, 112
BspACI CCGC 1 cut(s) 137
BspCNI CTCAG 1 cut(s) 214
BspFNI CGCG 1 cut(s) 283
BspPI GGATC 2 cut(s) 50, 92
BspT104I TTCGAA 1 cut(s) 79
BssMI GATC 3 cut(s) 42, 97, 112
Bst2UI CCWGG 1 cut(s) 269
BstBI TTCGAA 1 cut(s) 79
BstC8I GCNNGC 1 cut(s) 90
BstDEI CTNAG 2 cut(s) 130, 222
BstFNI CGCG 1 cut(s) 283
BstHHI GCGC 1 cut(s) 283
BstKTI GATC 3 cut(s) 45, 100, 115
BstMBI GATC 3 cut(s) 42, 97, 112
BstMWI GCNNNNNNNGC 1 cut(s) 287
BstNI CCWGG 1 cut(s) 269
BstNSI RCATGY 1 cut(s) 290
BstSCI CCNGG 1 cut(s) 267
BstUI CGCG 1 cut(s) 283
BtsI GCAGTG 1 cut(s) 233
BtsIMutI CAGTG 1 cut(s) 233
Cac8I GCNNGC 1 cut(s) 90
CfoI GCGC 1 cut(s) 283
Csp6I GTAC 1 cut(s) 6
CviAII CATG 1 cut(s) 287
CviJI RGCY 1 cut(s) 92
CviKI_1 RGCY 1 cut(s) 92
CviQI GTAC 1 cut(s) 6
DdeI CTNAG 2 cut(s) 130, 222
DpnI GATC 3 cut(s) 44, 99, 114
DpnII GATC 3 cut(s) 42, 97, 112
DraI TTTAAA 1 cut(s) 192
EcoRII CCWGG 1 cut(s) 267
FaeI CATG 1 cut(s) 290
FaiI YATR 3 cut(s) 47, 288, 295
FatI CATG 1 cut(s) 286
FspBI CTAG 1 cut(s) 93
GlaI GCGC 1 cut(s) 282
HhaI GCGC 1 cut(s) 283
Hin1II CATG 1 cut(s) 290
Hin6I GCGC 1 cut(s) 281
HinP1I GCGC 1 cut(s) 281
HinfI GANTC 2 cut(s) 119, 126
Hpy166II GTNNAC 1 cut(s) 231
Hpy188I TCNGA 1 cut(s) 172
Hpy188III TCNNGA 3 cut(s) 116, 123, 242
Hpy8I GTNNAC 1 cut(s) 231
HpyCH4IV ACGT 1 cut(s) 167
HpyCH4V TGCA 3 cut(s) 67, 182, 254
HpyF10VI GCNNNNNNNGC 1 cut(s) 287
HpyF3I CTNAG 2 cut(s) 130, 222
HpySE526I ACGT 1 cut(s) 167
Hsp92II CATG 1 cut(s) 290
HspAI GCGC 1 cut(s) 281
Kzo9I GATC 3 cut(s) 42, 97, 112
LpnPI CCDG 3 cut(s) 114, 254, 281
LweI GCATC 1 cut(s) 33
MaeI CTAG 1 cut(s) 93
MaeII ACGT 1 cut(s) 167
MalI GATC 3 cut(s) 44, 99, 114
MboI GATC 3 cut(s) 42, 97, 112
MboII GAAGA 2 cut(s) 122, 271
MluCI AATT 4 cut(s) 70, 81, 187, 235
MmeI TCCRAC 1 cut(s) 188
MroXI GAANNNNTTC 1 cut(s) 263
MseI TTAA 2 cut(s) 155, 191
MspR9I CCNGG 1 cut(s) 269
MvaI CCWGG 1 cut(s) 269
MvnI CGCG 1 cut(s) 283
MwoI GCNNNNNNNGC 1 cut(s) 287
NdeII GATC 3 cut(s) 42, 97, 112
NlaIII CATG 1 cut(s) 290
NspI RCATGY 1 cut(s) 290
NspV TTCGAA 1 cut(s) 79
PdmI GAANNNNTTC 1 cut(s) 263
PfeI GAWTC 2 cut(s) 119, 126
PfoI TCCNGGA 1 cut(s) 267
Psp6I CCWGG 1 cut(s) 267
PspGI CCWGG 1 cut(s) 267
RsaI GTAC 1 cut(s) 7
RsaNI GTAC 1 cut(s) 6
SaqAI TTAA 2 cut(s) 155, 191
Sau3AI GATC 3 cut(s) 42, 97, 112
ScrFI CCNGG 1 cut(s) 269
SetI ASST 2 cut(s) 94, 170
SfaNI GCATC 1 cut(s) 33
SfuI TTCGAA 1 cut(s) 79
SmiI ATTTAAAT 1 cut(s) 192
Sse9I AATT 4 cut(s) 70, 81, 187, 235
SsiI CCGC 1 cut(s) 137
SspMI CTAG 1 cut(s) 93
StyD4I CCNGG 1 cut(s) 267
SwaI ATTTAAAT 1 cut(s) 192
TaiI ACGT 1 cut(s) 170
TaqI TCGA 1 cut(s) 79
TasI AATT 4 cut(s) 70, 81, 187, 235
TfiI GAWTC 2 cut(s) 119, 126
Tru1I TTAA 2 cut(s) 155, 191
Tru9I TTAA 2 cut(s) 155, 191
TscAI CASTG 1 cut(s) 233
TspRI CASTG 1 cut(s) 233
XapI RAATTY 1 cut(s) 235
XceI RCATGY 1 cut(s) 290
XmnI GAANNNNTTC 1 cut(s) 263
XspI CTAG 1 cut(s) 93
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.