RchiOBHm_Chr6g0300321
MYB Family

nuclease HARBI1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0000468
Physical Location & Seq
Reverse (-)
61218855 .. 61219395
541 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ26970

Sequence Viewer

Length: 267 bp
ATGGTGTATGCAAGCGATGTAAGATGCATAAACAGTCTCCGCATGGATAGGCATACATTTAGCATATTGTGCTCTATGTTACACACATCTGGTAAATTAAGAGACACAAGAAATGTAGCTGTAGATGAAATGGTGGCTATGTTCTTGCATATTCTTGCACACCATGAAAAAAACATAATCATACAAGATAGATTTTTGCGTTATGGGGAAACAATTAGCAGATATTTTAACACGGTATTAAGAGCAGTCCTATGTCTACAAGGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DDE_Tnp_4 Myb_DNA-bind_3

Protein Analysis

88

Amino Acids

10.26

Weight (kDa)

9.02

Isoelectric Point (pI)

35.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF8040 PF26138 6 - 84 6.5e-27 Domain of unknown function (DUF8040)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000468)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g04030 FvH4_2g09411 FvH4_3g15551 FvH4_3g36421 FvH4_4g11701 FvH4_5g36381 FvH4_6g09143 FvH4_6g09144 FvH4_6g21972
malus_domestica MD00G1096500.v1.1 MD00G1122500.v1.1 MD02G1090600.v1.1 MD02G1173300.v1.1 MD05G1202800.v1.1 MD14G1123600.v1.1
prunus_persica Prupe.1G083600_v2.0.a1 Prupe.1G245300_v2.0.a1 Prupe.5G002100_v2.0.a1 Prupe.6G061200_v2.0.a1
pyrus_communis pycom01g07060 pycom02g13920 pycom04g11780 pycom04g13480 pycom04g21940 pycom06g07950 pycom07g03740 pycom07g03980 pycom09g02010 pycom09g02020 pycom09g11510 pycom09g14260 pycom10g02500 pycom10g15690 pycom12g08730 pycom12g08740 pycom14g19840 pycom15g16780 pycom15g24940 pycom15g25660 pycom16g21630 pycom16g26320
rosa_chinensis RchiOBHm_Chr1g0330371 RchiOBHm_Chr1g0331991 RchiOBHm_Chr6g0300321
rosa_laevigata RLG00000013795
rosa_multiflora Rmu_sc0000060.1_g000010 Rmu_sc0000288.1_g000044 Rmu_sc0002219.1_g000002 Rmu_sc0003995.1_g000003
rosa_roxburghii Rroxscaffold_1G00059020 Rroxscaffold_2G00108450 Rroxscaffold_2G00112460 Rroxscaffold_5G00375700 Rroxscaffold_5G00381640 Rroxscaffold_7G00158590
rosa_rugosa Rorug01G0237300 Rorug01G0237400 Rorug01G0237500 Rorug02G0051900 Rorug03G0260600 Rorug03G0285800 Rorug04G0076800 Rorug04G0162600 Rorug07G0264500 Rorug07G0264500
rosa_samantha Rh2DG003500 Rh3CG244800 Rh4CG334200 Rh5AG318300 Rh5BG549000 Rh7AG126400 Rh7CG118500 Rh7CG154500 Rh7DG025400
rosa_wichuraiana Rw1G026390 Rw2G005400 Rw2G034490 Rw3G019530 Rw3G028000 Rw4G010490 Rw5G010830 Rw5G023340 Rw5G026580 Rw5G041150 Rw6G003010 Rw6G003290 Rw6G010630 Rw6G021220 Rw6G035650 Rw7G014310

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 256
AciI CCGC 1 cut(s) 40
AluBI AGCT 1 cut(s) 119
AluI AGCT 1 cut(s) 119
Alw21I GWGCWC 1 cut(s) 74
Alw26I GTCTC 2 cut(s) 41, 96
Bbv12I GWGCWC 1 cut(s) 74
BcoDI GTCTC 2 cut(s) 41, 96
BfmI CTRYAG 1 cut(s) 120
BmsI GCATC 1 cut(s) 14
BsiHKAI GWGCWC 1 cut(s) 74
BsmAI GTCTC 2 cut(s) 41, 96
Bsp1286I GDGCHC 1 cut(s) 74
BspACI CCGC 1 cut(s) 40
Bst4CI ACNGT 2 cut(s) 35, 235
BstAPI GCANNNNNTGC 1 cut(s) 69
BstC8I GCNNGC 1 cut(s) 13
BstMAI GTCTC 2 cut(s) 41, 96
BstMWI GCNNNNNNNGC 1 cut(s) 69
BstSFI CTRYAG 1 cut(s) 120
BtgZI GCGATG 1 cut(s) 30
Cac8I GCNNGC 1 cut(s) 13
CviAII CATG 2 cut(s) 43, 164
CviJI RGCY 2 cut(s) 119, 137
CviKI_1 RGCY 2 cut(s) 119, 137
EcoT22I ATGCAT 1 cut(s) 29
FaeI CATG 2 cut(s) 46, 167
FatI CATG 2 cut(s) 42, 163
FblI GTMKAC 1 cut(s) 256
Hin1II CATG 2 cut(s) 46, 167
Hpy166II GTNNAC 1 cut(s) 257
Hpy8I GTNNAC 1 cut(s) 257
HpyCH4III ACNGT 2 cut(s) 35, 235
HpyCH4V TGCA 4 cut(s) 11, 27, 148, 158
HpyF10VI GCNNNNNNNGC 1 cut(s) 69
Hsp92II CATG 2 cut(s) 46, 167
LpnPI CCDG 1 cut(s) 75
LweI GCATC 1 cut(s) 14
MaeIII GTNAC 1 cut(s) 78
MhlI GDGCHC 1 cut(s) 74
MluCI AATT 2 cut(s) 95, 213
Mph1103I ATGCAT 1 cut(s) 29
MseI TTAA 3 cut(s) 98, 228, 239
MwoI GCNNNNNNNGC 1 cut(s) 69
NlaIII CATG 2 cut(s) 46, 167
NsiI ATGCAT 1 cut(s) 29
SaqAI TTAA 3 cut(s) 98, 228, 239
SduI GDGCHC 1 cut(s) 74
SetI ASST 1 cut(s) 121
SfaNI GCATC 1 cut(s) 14
SfcI CTRYAG 1 cut(s) 120
SgeI CNNG 9 cut(s) 24, 55, 102, 120, 157, 167, 176, 197, 244
Sse9I AATT 2 cut(s) 95, 213
SsiI CCGC 1 cut(s) 40
TaaI ACNGT 2 cut(s) 35, 235
TasI AATT 2 cut(s) 95, 213
Tru1I TTAA 3 cut(s) 98, 228, 239
Tru9I TTAA 3 cut(s) 98, 228, 239
TspDTI ATGAA 2 cut(s) 141, 180
XmiI GTMKAC 1 cut(s) 256
Zsp2I ATGCAT 1 cut(s) 29
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.