Rorug03G0285800
MYB Family

Protein FAR1-RELATED SEQUENCE 5-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0000164
Physical Location & Seq
Reverse (-)
28774187 .. 28780856
6670 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0285800.1

Sequence Viewer

Length: 3879 bp
ATGGCTGAGGAGAATGGTGATACCAAAAATCATGAAAACCATGCAGAAGAAGAGAAAAGCTCAGCCCCCATGAATAGGGATCAGCCAGGCTCATCAGCTAGCAATGGAGATGAGAAAGTTGAAAAGATTCCTTTCTCCAAGCTATTCTCCTTTGCAGATAAGACTGATGTTATCTTGATGGTTGTCGGCACGATTGGTGCCATTGGGAATGGTTCTTGTATGCCCCTCATGACGCTATTGTTTGGGGAGATGATAGATTCTTTTGGATCTAATCAAAATTCAGACATAGTCTCAGTTGTTTCAAAGGTCTCTCTGAAATTTGTTTACCTGGCTGTGGGAGCAGCTGTGGCAGCATTTCTCCAGGTGTCTTGCTGGATGGTCACAGGGGAAAGACAAGCTGCAAGAATTAGAGGTTTGTATTTGAAAACAATATTGAGACAAGATGTTGCTTTCTTCGATATGGAAACAAACACTGGAGAGGTAGTTGGGAGAATGTCTGGTGACACTGTTCTCATTCAAGATGCCATGGGGGAGAAGGTTGGAAAATTCTTACAGCTGCTTTCAACATTCATTGGAGGGTTTATAATAGCATTCATCAAGGGGTGGCTTCTCACTCTTGTCATGCTATCCTCTATTCCTTTGCTTGTGGCATCTGGTGCAACGATGTCCATCATTATAACCAAGATGGCATCCCGTGGACAAACTGCTTACGCAAAAGCAGCAAATGTAGTTGAACAAACAATTGGGTCCATTAGAACCGTTGCATCATTTACTGGCGAGAGGGAAGCTATAACTAGTTATAACAAATATCTCGTAGATGCTTACAAATCAGGTGTTCATGAAGGTTCAGCTGCTGGAATAGGTCTTGGCTTGGTTATGTGTGTTGTGTTCAGCACATATGCCTTGGCTGTATGGTTTGGTTCAAAGATGATAAGGGAAAATGGATATACTGGGGGTGAAGTACTGAATGTGATTGTTGCTGTGTTGACTGGATCTATGTCTTTAGGGCAGACATCACCATGCATGAGTGCATTTGCTGCTGGTCAAGCTGCAGCTTATAAGATGTTTCAGACTATTAGTAGAAAGCCAGAGATAGATGCTTATGATGAAAAGGGAAAGACTTTGGGTGACATTTCGGGAGACATAGAGTTGAGAGATGTTTATTTCAGCTATCCAGCCAGACCGGATGAGCAAATATTTGACGGGTTCTCTCTTTGTATCCCTAGTGGCACAACTGCTGCTTTGGTTGGACAAAGTGGAAGTGGCAAGTCAACAGTCATCAGTCTGATAGAGAGATTTTATGATCCGCAAGCTGGTGAAGTTTTAATAGATGGCATAAACCTAAAAGAATTTCAACTTAAATGGATTCGGAGTAAAATTGGTCTTGTCAGTCAGGAACCTGTCCTGTTTGCATCCAGCATTAAGGAAAATATTGCCTATGGAAAGGATGGTGCTACCACTGAAGAGATACAAGCAGCAGCTGAGCTTGCAAATGCGGCTAAATTTGTTGATAAATTGCCTCAGGGCCTTGACAGCTTGGTCGGTGAGCATGGAACTCAGCTGTCTGGTGGGCAGAAGCAGAGAATTGCTATTGCAAGAGCAATTTTGAAAGACCCAAGGATTTTACTTCTGGATGAAGCTACAAGTGCACTTGATGCAGAATCTGAGAGGGTAGTTCAAGAAGCATTGGATAGGATTATGGTTAACCGAACTACTGTTGTTGTCGCTCATCGTTTGAGTACAGTGAGGAATGCAGACATGATTGCTGTCATTCATAAAGGAAAGATGGTTGAAAAAGGTTCGCACTTGAATTTACTCAAAGATCCTGAGGGAGCTTACTCTCAGCTTATACGCTTGCAAGAAGTAAACAAAGAGTCAGAACAAACGTCAGAAGACCAAAACAAACCTGAAATAACTCTGGCATCTCTTAGACAGTCGAGTCAAAGAACATCGAGTCAAAGACTTTCGTTTGCACGATCCTTAAGTAGAAATTCTTCTGTAGGAAATAGCAGCCGTCACTCATATTCAGTGGCATTTGGTTTACCCACTGGACTTGGAGGCATTGGTGTCCAAGATGTTGCATATGAAGAAACAGAGCTAGCACCAGAGAAACCTCCAAATGTCTCACTCCGCCGCATTGCTGCCCTGAACAAACCTGAGATTCCAGTTCTTATTATTGGAACTATAGCTGCAATCATCAATGGTGTTATACTTCCAATATTCGGTGTGCTCATTTCCAGGGTTATAAAGACTTTCTATGAACCACCTCATCAACAGAAGAAAGATGCAGCATTTTGGGCAATAATTTTTATGATCCTTGGTCTGATATCATTCGTGGTGATCCCAGCACGAGGATATTTCTTTTCAGTAGCTGGCAGCAAGTTAATTCAGCGTATCAGATTATTGTGTTTTGAGAGAGTGGTTCACATGGAGGTTGGGTGGTTTGATGAGCCTGAGAACTCAAGTGGTGCAATTGGTGCAAGGCTCTCAGCAGATGCAGCGTCGGTGAGGGCCCTAGTCGGAGATGCTCTAGCTCAGATGGTTCAAAACATGGCAGCTGCAGTTGCAGGTTTGGTCATTGCTTATATTGCATGTTGGCAGCTGGCATTTATTGTCCTCGCATTGCTTCCTCTCATCGCAGTTAATGGATATGTACAAATAAAGTTCATGAAAGGATTCAGCGCAGATGCAAAGATGATGTATGAGGAGGCAAGCCAAGTTGCTAATGACGCAGTTGGAAGTATAAGAACAGTTGCTTCTTTCTGTGCTGAAGAGAAGGTAATGGAACTATACAGAAGGAAATGTGAAGGCCCTATGAAGACAGGGATAAGACAAGGCTTGATCAGTGGTATAGGATTTGGGGTATCTTTCTTCTTTTTGTTTTGTGTCTACGCAACCAGTTTCTATGCGGGAGCTCAACTCGTGAAGGCTGGCAAAACAACATTTACAGACGTTTTCCAAGTTTTCTTTGCTCTGACCATGGCAGCTACCGGAATTTCTCAATCAAGCTCCTTTGGTCCCGATTCTGGTAAAGCCAAAACTTCTGCTGCTTCCATATTTGCAATAATAGACCGGCCATCAAAGATAGACCCAAGTAACGAGTCTGGCACGAAAATTGATGGCGGTGTGAAAGGAGAGATTGAGCTTCGCCATGTAAGCTTTAAGTATCCATCTAGGCCAGAAACACCTATTTTCCGAGACCTCAATTTAACTATCCGCTCTGGCAAGACGGTTGCCCTGGTTGGAGAAAGTGGGAGCGGAAAATCAACTGTTGTTGCATTGTTGCAAAGATTTTATGATCCGGATTCAGGTCATATCACACTTGATGGAATTGAACTTGGCAACTACAACTTGAAATGGTTGAGGCAGCAGATGGGACTCGTAAGCCAAGAACCTGTTTTATTTAATGACACCATTCGCGCCAACATTGCGTATGGAAAGGAAGAAACTGCAACTGAGGCAGAAATTATAGCTGCATCAGAGTTGGCCAATGCCCACAAGTTCATCAGTAGCCTACACCAGGGCTATGATACCGTAGTAGGAGAACGAGGAATCCAATTATCCGGGGGGCAGAAGCAACGTGTAGCCATTGCGCGTGCTATAATCAAGAGCCCCAAGATATTACTGTTGGATGAAGCTACGAGTGCACTTGATGCCGAATCTGAGAGAGTGGTTCAAGATGCATTAGACCGAGTCATGGTGAACCGGACAACAGTGGTGGTGGCTCATAGACTATCCACAATCAAGAATGCTGATGTGATTGCAGTGGTTAAAAATGGAGTTATAGTAGAGAAAGGGAAGCATGACAATTTGATTAATATCACCGATGGGTTTTATGCATCCCTAATTGCTCTTCACATGAGCTCTTCAACTGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE SWIM

Protein Analysis

1292

Amino Acids

139.27

Weight (kDa)

6.45

Isoelectric Point (pI)

37.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC_membrane PF00664 61 - 333 1.2e-58 ABC transporter transmembrane region
ABC_tran PF00005 401 - 549 3.1e-33 ABC transporter
ABC_membrane PF00664 724 - 995 5.2e-59 ABC transporter transmembrane region
ABC_tran PF00005 1066 - 1215 5.2e-35 ABC transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000164)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02320 FvH4_1g21472 FvH4_2g00813 FvH4_2g02512 FvH4_2g03921 FvH4_2g23460 FvH4_3g29141 FvH4_4g05791 FvH4_4g06321 FvH4_4g15595 FvH4_4g18162 FvH4_4g18163 FvH4_4g29541 FvH4_4g29541 FvH4_4g29541 FvH4_4g29541 FvH4_4g29541 FvH4_5g31093 FvH4_6g01982 FvH4_6g21931 FvH4_6g44691 FvH4_6g48541
prunus_persica Prupe.1G074100_v2.0.a1 Prupe.3G021400_v2.0.a1
pyrus_communis pycom02g18570 pycom14g00670
rosa_chinensis RchiOBHm_Chr1g0379201 RchiOBHm_Chr1g0379361 RchiOBHm_Chr4g0405981 RchiOBHm_Chr5g0073641 RchiOBHm_Chr5g0073651 RchiOBHm_Chr7g0236661
rosa_multiflora Rmu_co8179562.1_g000001 Rmu_co8343647.1_g000001 Rmu_sc0000041.1_g000017 Rmu_sc0000114.1_g000020 Rmu_sc0000286.1_g000006 Rmu_sc0000308.1_g000038 Rmu_sc0000365.1_g000061 Rmu_sc0000365.1_g000062 Rmu_sc0000538.1_g000060 Rmu_sc0000538.1_g000061 Rmu_sc0000586.1_g000016 Rmu_sc0000898.1_g000007 Rmu_sc0000913.1_g000003 Rmu_sc0000913.1_g000004 Rmu_sc0000996.1_g000006 Rmu_sc0000996.1_g000007 Rmu_sc0000998.1_g000003 Rmu_sc0001350.1_g000009 Rmu_sc0002079.1_g000009 Rmu_sc0002200.1_g000013 Rmu_sc0002226.1_g000025 Rmu_sc0002279.1_g000014 Rmu_sc0002478.1_g000014 Rmu_sc0002717.1_g000004 Rmu_sc0002868.1_g000027 Rmu_sc0002889.1_g000043 Rmu_sc0003023.1_g000001 Rmu_sc0003110.1_g000006 Rmu_sc0003226.1_g000028 Rmu_sc0003226.1_g000029 Rmu_sc0003337.1_g000053 Rmu_sc0003558.1_g000007 Rmu_sc0004345.1_g000014 Rmu_sc0004383.1_g000007 Rmu_sc0004888.1_g000021 Rmu_sc0005114.1_g000012 Rmu_sc0005223.1_g000019 Rmu_sc0005223.1_g000020 Rmu_sc0005639.1_g000025 Rmu_sc0005685.1_g000027 Rmu_sc0005992.1_g000002 Rmu_sc0006326.1_g000034 Rmu_sc0006326.1_g000035 Rmu_sc0007390.1_g000012 Rmu_sc0007451.1_g000006 Rmu_sc0007825.1_g000003 Rmu_sc0008600.1_g000023 Rmu_sc0009291.1_g000003 Rmu_sc0012046.1_g000001 Rmu_sc0012046.1_g000002 Rmu_sc0012710.1_g000001 Rmu_sc0015238.1_g000001 Rmu_sc0016125.1_g000003 Rmu_sc0016175.1_g000001 Rmu_sc0016898.1_g000001 Rmu_sc0017323.1_g000010 Rmu_sc0017874.1_g000002 Rmu_sc0019167.1_g000001 Rmu_sc0020815.1_g000006 Rmu_sc0025564.1_g000001 Rmu_sc0026418.1_g000001 Rmu_sc0035188.1_g000002 Rmu_sc0039254.1_g000001 Rmu_ssc0000120.1_g000015 Rmu_ssc0000120.1_g000016 Rmu_ssc0000330.1_g000023 Rmu_ssc0000433.1_g000004
rosa_roxburghii Rroxscaffold_1G00047130 Rroxscaffold_1G00051320 Rroxscaffold_1G00056600 Rroxscaffold_2G00109650 Rroxscaffold_2G00119980 Rroxscaffold_3G00222550 Rroxscaffold_3G00224980 Rroxscaffold_3G00251020 Rroxscaffold_6G00411190 Rroxscaffold_7G00166520 Rroxscaffold_7G00172920 Rroxscaffold_7G00191860 Rroxscaffold_7G00194430
rosa_rugosa Rorug01G0198900 Rorug01G0217300 Rorug01G0244500 Rorug02G0147400 Rorug02G0152200 Rorug02G0595500 Rorug02G0595600 Rorug03G0060500 Rorug03G0203000 Rorug03G0285800 Rorug04G0027200 Rorug04G0027300 Rorug04G0225800 Rorug05G0073400 Rorug05G0213300 Rorug05G0324600 Rorug05G0390900 Rorug05G0391000 Rorug05G0391100 Rorug05G0391200 Rorug05G0462900 Rorug05G0473000 Rorug06G0256500 Rorug07G0199000 Rorug07G0208800 Rorug07G0208800 Rorug07G0316600 Rorug07G0316700
rosa_samantha Rh2BG532400 Rh2CG581900 Rh3CG322600 Rh6AG079900 Rh6AG250800 Rh6AG496300 Rh6BG506100 Rh6CG126000 Rh6CG511700 Rh6DG109400 Rh6DG112700 Rh7CG104500 Rh7CG322000 Rh7CG431500
rosa_wichuraiana Rw0G020410 Rw1G009190 Rw1G014580 Rw1G021000 Rw1G022190 Rw2G025900 Rw2G029920 Rw2G037530 Rw3G018560 Rw3G020560 Rw4G008500 Rw4G022520 Rw5G019030 Rw5G031180 Rw5G044830 Rw6G005010 Rw6G006890 Rw6G011330 Rw6G011380 Rw6G023900 Rw7G028490 Rw7G030170 Rw7G030370 Rw7G032030 Rw7G032040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 5 cut(s) 584, 677, 801, 1059, 2246
AasI GACNNNNNNGTC 2 cut(s) 1538, 1938
Acc36I ACCTGC 1 cut(s) 2558
AccB1I GGYRCC 1 cut(s) 197
AccBSI CCGCTC 2 cut(s) 3219, 3258
AccI GTMKAC 1 cut(s) 2889
AccII CGCG 2 cut(s) 3420, 3595
AccIII TCCGGA 1 cut(s) 3301
AciI CCGC 8 cut(s) 1307, 1496, 2131, 2134, 2909, 3123, 3217, 3258
AclWI GGATC 9 cut(s) 87, 274, 1000, 1298, 1817, 1971, 2308, 2335, 3293
AcoI YGGCCR 2 cut(s) 3074, 3486
AcsI RAATTY 8 cut(s) 277, 317, 545, 1349, 1502, 1810, 1990, 2994
AcuI CTGAAG 2 cut(s) 1482, 2790
AfaI GTAC 3 cut(s) 963, 1741, 2655
AfiI CCNNNNNNNGG 9 cut(s) 75, 334, 1313, 2222, 2351, 3026, 3308, 3520, 3697
AflII CTTAAG 1 cut(s) 1981
AflIII ACRYGT 1 cut(s) 3580
AhlI ACTAGT 1 cut(s) 794
AjnI CCWGG 6 cut(s) 85, 327, 360, 2237, 3237, 3519
AjuI GAANNNNNNNTTGG 2 cut(s) 726, 758
AloI GAACNNNNNNTCC 2 cut(s) 3537, 3569
Alw21I GWGCWC 5 cut(s) 1651, 2232, 2917, 3649, 3866
Alw26I GTCTC 6 cut(s) 295, 313, 430, 1134, 2128, 3192
Alw44I GTGCAC 2 cut(s) 1647, 3645
AlwI GGATC 9 cut(s) 87, 274, 1000, 1298, 1817, 1971, 2308, 2335, 3293
AlwNI CAGNNNCTG 4 cut(s) 854, 1481, 1664, 2372
Aor13HI TCCGGA 1 cut(s) 3301
AoxI GGCC 6 cut(s) 1525, 2511, 2809, 3074, 3176, 3486
ApaI GGGCCC 1 cut(s) 2515
ApaLI GTGCAC 2 cut(s) 1647, 3645
ApoI RAATTY 8 cut(s) 277, 317, 545, 1349, 1502, 1810, 1990, 2994
AseI ATTAAT 1 cut(s) 3816
Asp700I GAANNNNTTC 3 cut(s) 126, 1993, 2675
AspLEI GCGC 3 cut(s) 2684, 3422, 3595
AspS9I GGNCC 6 cut(s) 747, 1525, 2511, 2512, 2810, 3017
AsuC2I CCSGG 1 cut(s) 3565
AsuNHI GCTAGC 2 cut(s) 98, 2098
AvaII GGWCC 2 cut(s) 747, 3017
AxyI CCTNAGG 2 cut(s) 1521, 1827
BaeGI GKGCMC 3 cut(s) 1651, 2515, 3649
BaeI ACNNNNGTAYC 2 cut(s) 3522, 3555
BalI TGGCCA 1 cut(s) 3488
BanI GGYRCC 1 cut(s) 197
BanII GRGCYC 4 cut(s) 2515, 2917, 3614, 3866
BarI GAAGNNNNNNTAC 2 cut(s) 1978, 2010
BauI CACGAG 2 cut(s) 2349, 2921
BbsI GAAGAC 2 cut(s) 1899, 2825
Bbv12I GWGCWC 5 cut(s) 1651, 2232, 2917, 3649, 3866
BbvCI CCTCAGC 1 cut(s) 6
BceAI ACGGC 1 cut(s) 1998
BciT130I CCWGG 6 cut(s) 87, 329, 362, 2239, 3239, 3521
BciVI GTATCC 2 cut(s) 1229, 3177
BclI TGATCA 1 cut(s) 2841
BcnI CCSGG 1 cut(s) 3565
BcoDI GTCTC 6 cut(s) 295, 313, 430, 1134, 2128, 3192
BcuI ACTAGT 1 cut(s) 794
BfaI CTAG 7 cut(s) 99, 795, 1224, 2099, 2516, 2531, 3174
BfmI CTRYAG 4 cut(s) 1050, 1998, 2184, 2559
BfrI CTTAAG 1 cut(s) 1981
BfuAI ACCTGC 1 cut(s) 2558
BfuI GTATCC 2 cut(s) 1229, 3177
BlpI GCTNAGC 2 cut(s) 61, 1482
BmcAI AGTACT 1 cut(s) 963
Bme1390I CCNGG 7 cut(s) 87, 329, 362, 2239, 3239, 3521, 3565
Bme18I GGWCC 2 cut(s) 747, 3017
BmgT120I GGNCC 6 cut(s) 747, 1525, 2511, 2512, 2810, 3017
BmiI GGNNCC 5 cut(s) 199, 748, 1398, 2513, 3019
BmrFI CCNGG 7 cut(s) 87, 329, 362, 2239, 3239, 3521, 3565
BmrI ACTGGG 1 cut(s) 960
BmtI GCTAGC 2 cut(s) 102, 2102
BmuI ACTGGG 1 cut(s) 960
BpiI GAAGAC 2 cut(s) 1899, 2825
BplI GAGNNNNNCTC 4 cut(s) 44, 76, 2904, 2936
BpmI CTGGAG 2 cut(s) 344, 495
Bpu10I CCTNAGC 1 cut(s) 6
Bpu1102I GCTNAGC 2 cut(s) 61, 1482
BpuEI CTTGAG 1 cut(s) 2446
BpuMI CCSGG 1 cut(s) 3565
BsaBI GATNNNNATC 2 cut(s) 668, 3818
BsaI GGTCTC 2 cut(s) 313, 3192
BsaWI WCCGGW 4 cut(s) 1183, 2990, 3301, 3705
BsaXI ACNNNNNCTCC 8 cut(s) 330, 360, 468, 498, 2423, 2453, 3771, 3801
Bsc4I CCNNNNNNNGG 9 cut(s) 75, 334, 1313, 2222, 2351, 3026, 3308, 3520, 3697
Bse118I RCCGGY 1 cut(s) 3072
Bse1I ACTGG 7 cut(s) 478, 778, 955, 994, 2053, 2165, 2898
Bse21I CCTNAGG 2 cut(s) 1521, 1827
Bse3DI GCAATG 6 cut(s) 109, 2136, 2577, 2621, 3426, 3588
Bse8I GATNNNNATC 2 cut(s) 668, 3818
BseAI TCCGGA 1 cut(s) 3301
BseBI CCWGG 6 cut(s) 87, 329, 362, 2239, 3239, 3521
BseGI GGATG 8 cut(s) 381, 689, 1192, 1412, 1453, 1639, 3637, 3839
BseJI GATNNNNATC 2 cut(s) 668, 3818
BseLI CCNNNNNNNGG 9 cut(s) 75, 334, 1313, 2222, 2351, 3026, 3308, 3520, 3697
BseMI GCAATG 6 cut(s) 109, 2136, 2577, 2621, 3426, 3588
BseNI ACTGG 7 cut(s) 478, 778, 955, 994, 2053, 2165, 2898
BseRI GAGGAG 2 cut(s) 23, 2720
BseSI GKGCMC 3 cut(s) 1651, 2515, 3649
BseYI CCCAGC 1 cut(s) 2344
Bsh1236I CGCG 2 cut(s) 3420, 3595
BshFI GGCC 6 cut(s) 1527, 2513, 2811, 3076, 3178, 3488
BshNI GGYRCC 1 cut(s) 197
BsiHKAI GWGCWC 5 cut(s) 1651, 2232, 2917, 3649, 3866
BsiSI CCGG 6 cut(s) 1184, 2991, 3073, 3302, 3564, 3706
BslFI GGGAC 2 cut(s) 3003, 3390
BslI CCNNNNNNNGG 9 cut(s) 75, 334, 1313, 2222, 2351, 3026, 3308, 3520, 3697
BsmAI GTCTC 6 cut(s) 295, 313, 430, 1134, 2128, 3192
BsmFI GGGAC 2 cut(s) 3003, 3390
BsmI GAATGC 3 cut(s) 590, 1756, 3754
BsnI GGCC 6 cut(s) 1527, 2513, 2811, 3076, 3178, 3488
Bso31I GGTCTC 2 cut(s) 313, 3192
Bsp120I GGGCCC 1 cut(s) 2511
Bsp1286I GDGCHC 7 cut(s) 1651, 2232, 2515, 2917, 3614, 3649, 3866
Bsp13I TCCGGA 1 cut(s) 3301
Bsp1407I TGTACA 1 cut(s) 2653
Bsp1720I GCTNAGC 2 cut(s) 61, 1482
Bsp19I CCATGG 2 cut(s) 525, 2979
BspACI CCGC 8 cut(s) 1307, 1496, 2131, 2134, 2909, 3123, 3217, 3258
BspANI GGCC 6 cut(s) 1527, 2513, 2811, 3076, 3178, 3488
BspEI TCCGGA 1 cut(s) 3301
BspFNI CGCG 2 cut(s) 3420, 3595
BspHI TCATGA 4 cut(s) 31, 228, 838, 2667
BspLI GGNNCC 5 cut(s) 199, 748, 1398, 2513, 3019
BspMAI CTGCAG 2 cut(s) 1054, 2563
BspMI ACCTGC 1 cut(s) 2558
BspOI GCTAGC 2 cut(s) 102, 2102
BspPI GGATC 9 cut(s) 87, 274, 1000, 1298, 1817, 1971, 2308, 2335, 3293
BspQI GCTCTTC 2 cut(s) 3858, 3871
BspT107I GGYRCC 1 cut(s) 197
BspTI CTTAAG 1 cut(s) 1981
BspTNI GGTCTC 2 cut(s) 313, 3192
BsrBI CCGCTC 2 cut(s) 3219, 3258
BsrDI GCAATG 6 cut(s) 109, 2136, 2577, 2621, 3426, 3588
BsrFI RCCGGY 1 cut(s) 3072
BsrGI TGTACA 1 cut(s) 2653
BsrI ACTGG 7 cut(s) 478, 778, 955, 994, 2053, 2165, 2898
BssAI RCCGGY 1 cut(s) 3072
BssSI CACGAG 2 cut(s) 2349, 2921
BssT1I CCWWGG 5 cut(s) 525, 903, 1616, 2317, 2979
Bst2BI CACGAG 2 cut(s) 2349, 2921
Bst2UI CCWGG 6 cut(s) 87, 329, 362, 2239, 3239, 3521
Bst6I CTCTTC 5 cut(s) 45, 1458, 2766, 3858, 3871
BstAFI CTTAAG 1 cut(s) 1981
BstAPI GCANNNNNTGC 5 cut(s) 656, 1037, 1655, 2477, 3653
BstAUI TGTACA 1 cut(s) 2653
BstDSI CCRYGG 3 cut(s) 525, 694, 2979
BstENI CCTNNNNNAGG 1 cut(s) 3518
BstF5I GGATG 8 cut(s) 381, 689, 1192, 1412, 1453, 1639, 3637, 3839
BstFNI CGCG 2 cut(s) 3420, 3595
BstHHI GCGC 3 cut(s) 2684, 3422, 3595
BstMAI GTCTC 6 cut(s) 295, 313, 430, 1134, 2128, 3192
BstNI CCWGG 6 cut(s) 87, 329, 362, 2239, 3239, 3521
BstNSI RCATGY 1 cut(s) 2595
BstSCI CCNGG 7 cut(s) 85, 327, 360, 2237, 3237, 3519, 3563
BstSFI CTRYAG 4 cut(s) 1050, 1998, 2184, 2559
BstSLI GKGCMC 3 cut(s) 1651, 2515, 3649
BstUI CGCG 2 cut(s) 3420, 3595
BstV2I GAAGAC 2 cut(s) 1899, 2825
BstX2I RGATCY 3 cut(s) 266, 992, 1822
BstYI RGATCY 3 cut(s) 266, 992, 1822
Bsu36I CCTNAGG 2 cut(s) 1521, 1827
BsuI GTATCC 2 cut(s) 1229, 3177
BsuRI GGCC 6 cut(s) 1527, 2513, 2811, 3076, 3178, 3488
BtgI CCRYGG 3 cut(s) 525, 694, 2979
BtgZI GCGATG 1 cut(s) 2620
BtsCI GGATG 8 cut(s) 381, 689, 1192, 1412, 1453, 1639, 3637, 3839
BtsI GCAGTG 1 cut(s) 3771
BtsIMutI CAGTG 9 cut(s) 471, 504, 1458, 1749, 2034, 2046, 2851, 3720, 3771
BveI ACCTGC 1 cut(s) 2558
CaiI CAGNNNCTG 4 cut(s) 854, 1481, 1664, 2372
CciI TCATGA 4 cut(s) 31, 228, 838, 2667
CfoI GCGC 3 cut(s) 2684, 3422, 3595
Cfr10I RCCGGY 1 cut(s) 3072
Cfr13I GGNCC 6 cut(s) 747, 1525, 2511, 2512, 2810, 3017
CseI GACGC 3 cut(s) 241, 2490, 2738
Csp6I GTAC 3 cut(s) 962, 1740, 2654
CspCI CAANNNNNGTGG 4 cut(s) 2035, 2070, 3699, 3734
CviQI GTAC 3 cut(s) 962, 1740, 2654
DrdI GACNNNNNNGTC 2 cut(s) 1538, 1938
DseDI GACNNNNNNGTC 2 cut(s) 1538, 1938
EaeI YGGCCR 2 cut(s) 3074, 3486
Eam1104I CTCTTC 5 cut(s) 45, 1458, 2766, 3858, 3871
EarI CTCTTC 5 cut(s) 45, 1458, 2766, 3858, 3871
EciI GGCGGA 1 cut(s) 2120
Ecl136II GAGCTC 2 cut(s) 2915, 3864
Eco130I CCWWGG 5 cut(s) 525, 903, 1616, 2317, 2979
Eco24I GRGCYC 4 cut(s) 2515, 2917, 3614, 3866
Eco31I GGTCTC 2 cut(s) 313, 3192
Eco32I GATATC 1 cut(s) 2328
Eco47I GGWCC 2 cut(s) 747, 3017
Eco53kI GAGCTC 2 cut(s) 2915, 3864
Eco57I CTGAAG 2 cut(s) 1482, 2790
Eco81I CCTNAGG 2 cut(s) 1521, 1827
EcoICRI GAGCTC 2 cut(s) 2915, 3864
EcoNI CCTNNNNNAGG 1 cut(s) 3518
EcoO109I RGGNCCY 4 cut(s) 1525, 2511, 2512, 2810
EcoRII CCWGG 6 cut(s) 85, 327, 360, 2237, 3237, 3519
EcoRV GATATC 1 cut(s) 2328
EcoT14I CCWWGG 5 cut(s) 525, 903, 1616, 2317, 2979
EcoT22I ATGCAT 3 cut(s) 1025, 3685, 3841
EcoT38I GRGCYC 4 cut(s) 2515, 2917, 3614, 3866
ErhI CCWWGG 5 cut(s) 525, 903, 1616, 2317, 2979
FaqI GGGAC 2 cut(s) 3003, 3390
FauI CCCGC 1 cut(s) 2902
FauNDI CATATG 2 cut(s) 898, 2083
FbaI TGATCA 1 cut(s) 2841
FblI GTMKAC 1 cut(s) 2889
FokI GGATG 8 cut(s) 388, 676, 1199, 1399, 1460, 1646, 3644, 3826
FriOI GRGCYC 4 cut(s) 2515, 2917, 3614, 3866
FspBI CTAG 7 cut(s) 99, 795, 1224, 2099, 2516, 2531, 3174
GlaI GCGC 3 cut(s) 2683, 3421, 3594
GsaI CCCAGC 1 cut(s) 2348
GsuI CTGGAG 2 cut(s) 344, 495
HaeIII GGCC 6 cut(s) 1527, 2513, 2811, 3076, 3178, 3488
HapII CCGG 6 cut(s) 1184, 2991, 3073, 3302, 3564, 3706
HgaI GACGC 3 cut(s) 241, 2490, 2738
HhaI GCGC 3 cut(s) 2684, 3422, 3595
Hin6I GCGC 3 cut(s) 2682, 3420, 3593
HinP1I GCGC 3 cut(s) 2682, 3420, 3593
HincII GTYRAC 3 cut(s) 987, 1272, 1705
HindII GTYRAC 3 cut(s) 987, 1272, 1705
HindIII AAGCTT 1 cut(s) 3157
HpaI GTTAAC 1 cut(s) 1705
HpaII CCGG 6 cut(s) 1184, 2991, 3073, 3302, 3564, 3706
Hpy99I CGWCG 1 cut(s) 2506
HpyAV CCTTC 6 cut(s) 529, 836, 2770, 2790, 2801, 2920
HpyCH4IV ACGT 3 cut(s) 1886, 2952, 3580
HpySE526I ACGT 3 cut(s) 1886, 2952, 3580
HspAI GCGC 3 cut(s) 2682, 3420, 3593
Kpn2I TCCGGA 1 cut(s) 3301
Ksp22I TGATCA 1 cut(s) 2841
KspAI GTTAAC 1 cut(s) 1705
LguI GCTCTTC 2 cut(s) 3858, 3871
LmnI GCTCC 5 cut(s) 338, 1832, 2912, 3014, 3255
MaeI CTAG 7 cut(s) 99, 795, 1224, 2099, 2516, 2531, 3174
MaeII ACGT 3 cut(s) 1886, 2952, 3580
MaeIII GTNAC 5 cut(s) 379, 500, 1127, 2015, 3095
MbiI CCGCTC 2 cut(s) 3219, 3258
MfeI CAATTG 2 cut(s) 741, 2472
MflI RGATCY 3 cut(s) 266, 992, 1822
MhlI GDGCHC 7 cut(s) 1651, 2232, 2515, 2917, 3614, 3649, 3866
MlsI TGGCCA 1 cut(s) 3488
MluNI TGGCCA 1 cut(s) 3488
MlyI GAGTC 6 cut(s) 1883, 1948, 1963, 3110, 3372, 3702
MmeI TCCRAC 6 cut(s) 520, 1228, 2500, 2716, 3223, 3609
Mox20I TGGCCA 1 cut(s) 3488
Mph1103I ATGCAT 3 cut(s) 1025, 3685, 3841
MroI TCCGGA 1 cut(s) 3301
MroXI GAANNNNTTC 3 cut(s) 126, 1993, 2675
MscI TGGCCA 1 cut(s) 3488
MslI CAYNNNNRTG 1 cut(s) 1018
Msp20I TGGCCA 1 cut(s) 3488
MspA1I CMGCKG 7 cut(s) 344, 556, 851, 1481, 1561, 2558, 2602
MspCI CTTAAG 1 cut(s) 1981
MspI CCGG 6 cut(s) 1184, 2991, 3073, 3302, 3564, 3706
MspR9I CCNGG 7 cut(s) 87, 329, 362, 2239, 3239, 3521, 3565
MunI CAATTG 2 cut(s) 741, 2472
Mva1269I GAATGC 3 cut(s) 590, 1756, 3754
MvaI CCWGG 6 cut(s) 87, 329, 362, 2239, 3239, 3521
MvnI CGCG 2 cut(s) 3420, 3595
NciI CCSGG 1 cut(s) 3565
NcoI CCATGG 2 cut(s) 525, 2979
NdeI CATATG 2 cut(s) 898, 2083
NheI GCTAGC 2 cut(s) 98, 2098
NlaIV GGNNCC 5 cut(s) 199, 748, 1398, 2513, 3019
NmuCI GTSAC 4 cut(s) 379, 500, 1127, 2015
NsiI ATGCAT 3 cut(s) 1025, 3685, 3841
NspI RCATGY 1 cut(s) 2595
PagI TCATGA 4 cut(s) 31, 228, 838, 2667
PciSI GCTCTTC 2 cut(s) 3858, 3871
PctI GAATGC 3 cut(s) 590, 1756, 3754
PdmI GAANNNNTTC 3 cut(s) 126, 1993, 2675
PflFI GACNNNGTC 2 cut(s) 287, 3692
PleI GAGTC 6 cut(s) 1882, 1947, 1962, 3109, 3372, 3701
PpsI GAGTC 6 cut(s) 1882, 1947, 1962, 3109, 3372, 3701
PshBI ATTAAT 1 cut(s) 3816
PsiI TTATAA 5 cut(s) 584, 677, 801, 1059, 2246
Psp124BI GAGCTC 2 cut(s) 2917, 3866
Psp6I CCWGG 6 cut(s) 85, 327, 360, 2237, 3237, 3519
PspFI CCCAGC 1 cut(s) 2344
PspGI CCWGG 6 cut(s) 85, 327, 360, 2237, 3237, 3519
PspN4I GGNNCC 5 cut(s) 199, 748, 1398, 2513, 3019
PspOMI GGGCCC 1 cut(s) 2511
PspPI GGNCC 6 cut(s) 747, 1525, 2511, 2512, 2810, 3017
PstI CTGCAG 2 cut(s) 1054, 2563
PstNI CAGNNNCTG 4 cut(s) 854, 1481, 1664, 2372
PsuI RGATCY 3 cut(s) 266, 992, 1822
PsyI GACNNNGTC 2 cut(s) 287, 3692
PvuII CAGCTG 7 cut(s) 344, 556, 851, 1481, 1561, 2558, 2602
RsaI GTAC 3 cut(s) 963, 1741, 2655
RsaNI GTAC 3 cut(s) 962, 1740, 2654
RseI CAYNNNNRTG 1 cut(s) 1018
SacI GAGCTC 2 cut(s) 2917, 3866
SapI GCTCTTC 2 cut(s) 3858, 3871
Sau96I GGNCC 6 cut(s) 747, 1525, 2511, 2512, 2810, 3017
ScaI AGTACT 1 cut(s) 963
SchI GAGTC 6 cut(s) 1883, 1948, 1963, 3110, 3372, 3702
ScrFI CCNGG 7 cut(s) 87, 329, 362, 2239, 3239, 3521, 3565
SduI GDGCHC 7 cut(s) 1651, 2232, 2515, 2917, 3614, 3649, 3866
SfcI CTRYAG 4 cut(s) 1050, 1998, 2184, 2559
SinI GGWCC 2 cut(s) 747, 3017
SmiMI CAYNNNNRTG 1 cut(s) 1018
SmlI CTYRAG 2 cut(s) 1981, 2461
SmoI CTYRAG 2 cut(s) 1981, 2461
SpeI ACTAGT 1 cut(s) 794
SsiI CCGC 8 cut(s) 1307, 1496, 2131, 2134, 2909, 3123, 3217, 3258
SspI AATATT 4 cut(s) 432, 1197, 1432, 2220
SspMI CTAG 7 cut(s) 99, 795, 1224, 2099, 2516, 2531, 3174
SstI GAGCTC 2 cut(s) 2917, 3866
StyD4I CCNGG 7 cut(s) 85, 327, 360, 2237, 3237, 3519, 3563
StyI CCWWGG 5 cut(s) 525, 903, 1616, 2317, 2979
TaiI ACGT 3 cut(s) 1889, 2955, 3583
TaqI TCGA 3 cut(s) 456, 1937, 1952
TaqII GACCGA 1 cut(s) 3705
TatI WGTACW 3 cut(s) 961, 1739, 2653
TauI GCSGC 2 cut(s) 1499, 2136
TscAI CASTG 9 cut(s) 478, 511, 1465, 1749, 2034, 2053, 2851, 3720, 3771
TseFI GTSAC 4 cut(s) 379, 500, 1127, 2015
Tsp45I GTSAC 4 cut(s) 379, 500, 1127, 2015
TspRI CASTG 9 cut(s) 478, 511, 1465, 1749, 2034, 2053, 2851, 3720, 3771
Tth111I GACNNNGTC 2 cut(s) 287, 3692
Vha464I CTTAAG 1 cut(s) 1981
VneI GTGCAC 2 cut(s) 1647, 3645
VpaK11BI GGWCC 2 cut(s) 747, 3017
VspI ATTAAT 1 cut(s) 3816
XagI CCTNNNNNAGG 1 cut(s) 3518
XapI RAATTY 8 cut(s) 277, 317, 545, 1349, 1502, 1810, 1990, 2994
XceI RCATGY 1 cut(s) 2595
XmiI GTMKAC 1 cut(s) 2889
XmnI GAANNNNTTC 3 cut(s) 126, 1993, 2675
XspI CTAG 7 cut(s) 99, 795, 1224, 2099, 2516, 2531, 3174
ZrmI AGTACT 1 cut(s) 963
Zsp2I ATGCAT 3 cut(s) 1025, 3685, 3841
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.