Rw0G020410

Protein FAR1-RELATED SEQUENCE 5-like

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Contig00920
Physical Location & Seq
Reverse (-)
55719 .. 56852
1134 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw0G020410.1

Sequence Viewer

Length: 1011 bp
ATGCTGCATGACTATTTTCTACTAGAGCAAGAAAAAGATTCCGGCTTTTATTTTACAATAAAGGCAGATATTGAAAATAAGATTACTCACTGTTTTTGGGTCGATACAAGTTCGAGACAATTGTATAAGTGTTATGGTGATGTGATTATCTTTGACACTACATACCAAACCAATCGGTATAGTTTAATTTTTGCACCATTGATGGGGATAAATAACCATGGTCAGACAATTGTGTTTGGAGCTGCATTCTTAAGTGACGAAACTGCAGATTCATTTATGTGGTTGTTGAAAGAATTTTTGAATGCCATGCCAGGTGGTGCTCCTAAAATGATTATTACTGATCAAGATCCAGCCATGGAAAAAGCTATTTCTGAAGTCCTCCCAGACACGTTTCATAGATATTGTAGCTGGCATATCTTGAGAAAGTTTTATGAGAAGCTTGATGCCATCAAATACAGAGATCACTATGATGACTTTAGAAATTGCATTTACTCATCTGAAAATGGAGAGGAGTTTGACTTCAAATGGAGATCAGTTCTTGCAAAAAGTGGATTAATGCCGGCCTATATGAACCATGTTTTCTCAGCTGGCATGTCAAGTAGTCAACGAGCTAAAAGTGCGCATTCCTTTTTTAAGGATTATTTTAATCGAGGTCTTTTACACAAACGGCATGAGGAGTTGATTTCATATCACATTGACATCAATGAGAAGCCTAGATTTAAGTGCCCCATTAAGATGGAAAAGCAAATGGCTGATATTTATACACGGAACTATAATTACAATTTGGAGGTTACAACAGAGGGTGAAACTAATTGCATACTTAAGGTCATGCGTGAGGATCATGAGGATGGAAGAGCTCGGGTGATTATGTATGACAAATCAAAAGATTTTTCCTCATGTAGCTGCAAATTATTTGAGAGTGCAGGAGTCCCATGTAGACATGTTTTGGCATTCTTGCACAAAGTACGTCAACTTCATAAATTGTCAGATCAATACATTTTGAAAAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

336

Amino Acids

39.54

Weight (kDa)

6.94

Isoelectric Point (pI)

44.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ZSWIM1-3_RNaseH-like PF21056 12 - 130 1.1e-11 Zinc finger SWIM domain-containing protein 1/3, RNaseH-like domain
Transposase_mut PF00872 38 - 182 1e-06 Transposase, Mutator family
MULE PF10551 48 - 141 8.7e-28 MULE transposase domain
SWIM PF04434 291 - 317 1.5e-06 SWIM zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000164)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02320 FvH4_1g21472 FvH4_2g00813 FvH4_2g02512 FvH4_2g03921 FvH4_2g23460 FvH4_3g29141 FvH4_4g05791 FvH4_4g06321 FvH4_4g15595 FvH4_4g18162 FvH4_4g18163 FvH4_4g29541 FvH4_4g29541 FvH4_4g29541 FvH4_4g29541 FvH4_4g29541 FvH4_5g31093 FvH4_6g01982 FvH4_6g21931 FvH4_6g44691 FvH4_6g48541
prunus_persica Prupe.1G074100_v2.0.a1 Prupe.3G021400_v2.0.a1
pyrus_communis pycom02g18570 pycom14g00670
rosa_chinensis RchiOBHm_Chr1g0379201 RchiOBHm_Chr1g0379361 RchiOBHm_Chr4g0405981 RchiOBHm_Chr5g0073641 RchiOBHm_Chr5g0073651 RchiOBHm_Chr7g0236661
rosa_multiflora Rmu_co8179562.1_g000001 Rmu_co8343647.1_g000001 Rmu_sc0000041.1_g000017 Rmu_sc0000114.1_g000020 Rmu_sc0000286.1_g000006 Rmu_sc0000308.1_g000038 Rmu_sc0000365.1_g000061 Rmu_sc0000365.1_g000062 Rmu_sc0000538.1_g000060 Rmu_sc0000538.1_g000061 Rmu_sc0000586.1_g000016 Rmu_sc0000898.1_g000007 Rmu_sc0000913.1_g000003 Rmu_sc0000913.1_g000004 Rmu_sc0000996.1_g000006 Rmu_sc0000996.1_g000007 Rmu_sc0000998.1_g000003 Rmu_sc0001350.1_g000009 Rmu_sc0002079.1_g000009 Rmu_sc0002200.1_g000013 Rmu_sc0002226.1_g000025 Rmu_sc0002279.1_g000014 Rmu_sc0002478.1_g000014 Rmu_sc0002717.1_g000004 Rmu_sc0002868.1_g000027 Rmu_sc0002889.1_g000043 Rmu_sc0003023.1_g000001 Rmu_sc0003110.1_g000006 Rmu_sc0003226.1_g000028 Rmu_sc0003226.1_g000029 Rmu_sc0003337.1_g000053 Rmu_sc0003558.1_g000007 Rmu_sc0004345.1_g000014 Rmu_sc0004383.1_g000007 Rmu_sc0004888.1_g000021 Rmu_sc0005114.1_g000012 Rmu_sc0005223.1_g000019 Rmu_sc0005223.1_g000020 Rmu_sc0005639.1_g000025 Rmu_sc0005685.1_g000027 Rmu_sc0005992.1_g000002 Rmu_sc0006326.1_g000034 Rmu_sc0006326.1_g000035 Rmu_sc0007390.1_g000012 Rmu_sc0007451.1_g000006 Rmu_sc0007825.1_g000003 Rmu_sc0008600.1_g000023 Rmu_sc0009291.1_g000003 Rmu_sc0012046.1_g000001 Rmu_sc0012046.1_g000002 Rmu_sc0012710.1_g000001 Rmu_sc0015238.1_g000001 Rmu_sc0016125.1_g000003 Rmu_sc0016175.1_g000001 Rmu_sc0016898.1_g000001 Rmu_sc0017323.1_g000010 Rmu_sc0017874.1_g000002 Rmu_sc0019167.1_g000001 Rmu_sc0020815.1_g000006 Rmu_sc0025564.1_g000001 Rmu_sc0026418.1_g000001 Rmu_sc0035188.1_g000002 Rmu_sc0039254.1_g000001 Rmu_ssc0000120.1_g000015 Rmu_ssc0000120.1_g000016 Rmu_ssc0000330.1_g000023 Rmu_ssc0000433.1_g000004
rosa_roxburghii Rroxscaffold_1G00047130 Rroxscaffold_1G00051320 Rroxscaffold_1G00056600 Rroxscaffold_2G00109650 Rroxscaffold_2G00119980 Rroxscaffold_3G00222550 Rroxscaffold_3G00224980 Rroxscaffold_3G00251020 Rroxscaffold_6G00411190 Rroxscaffold_7G00166520 Rroxscaffold_7G00172920 Rroxscaffold_7G00191860 Rroxscaffold_7G00194430
rosa_rugosa Rorug01G0198900 Rorug01G0217300 Rorug01G0244500 Rorug02G0147400 Rorug02G0152200 Rorug02G0595500 Rorug02G0595600 Rorug03G0060500 Rorug03G0203000 Rorug03G0285800 Rorug04G0027200 Rorug04G0027300 Rorug04G0225800 Rorug05G0073400 Rorug05G0213300 Rorug05G0324600 Rorug05G0390900 Rorug05G0391000 Rorug05G0391100 Rorug05G0391200 Rorug05G0462900 Rorug05G0473000 Rorug06G0256500 Rorug07G0199000 Rorug07G0208800 Rorug07G0208800 Rorug07G0316600 Rorug07G0316700
rosa_samantha Rh2BG532400 Rh2CG581900 Rh3CG322600 Rh6AG079900 Rh6AG250800 Rh6AG496300 Rh6BG506100 Rh6CG126000 Rh6CG511700 Rh6DG109400 Rh6DG112700 Rh7CG104500 Rh7CG322000 Rh7CG431500
rosa_wichuraiana Rw0G020410 Rw1G009190 Rw1G014580 Rw1G021000 Rw1G022190 Rw2G025900 Rw2G029920 Rw2G037530 Rw3G018560 Rw3G020560 Rw4G008500 Rw4G022520 Rw5G019030 Rw5G031180 Rw5G044830 Rw6G005010 Rw6G006890 Rw6G011330 Rw6G011380 Rw6G023900 Rw7G028490 Rw7G030170 Rw7G030370 Rw7G032030 Rw7G032040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 621
AccI GTMKAC 1 cut(s) 937
AclWI GGATC 2 cut(s) 341, 846
AcsI RAATTY 1 cut(s) 293
AcuI CTGAAG 1 cut(s) 393
AfaI GTAC 1 cut(s) 966
AfiI CCNNNNNNNGG 1 cut(s) 203
AflII CTTAAG 2 cut(s) 250, 821
AflIII ACRYGT 2 cut(s) 387, 940
AgsI TTSAA 5 cut(s) 74, 289, 301, 523, 1003
AjnI CCWGG 1 cut(s) 310
AluBI AGCT 8 cut(s) 242, 365, 408, 439, 587, 611, 857, 903
AluI AGCT 8 cut(s) 242, 365, 408, 439, 587, 611, 857, 903
Alw21I GWGCWC 2 cut(s) 322, 859
Alw26I GTCTC 1 cut(s) 109
AlwI GGATC 2 cut(s) 341, 846
Ama87I CYCGRG 1 cut(s) 858
AoxI GGCC 1 cut(s) 561
ApeKI GCWGC 3 cut(s) 4, 242, 903
ApoI RAATTY 1 cut(s) 293
AseI ATTAAT 1 cut(s) 554
AspLEI GCGC 1 cut(s) 622
AsuHPI GGTGA 3 cut(s) 149, 815, 874
AvaI CYCGRG 1 cut(s) 858
BaeGI GKGCMC 1 cut(s) 728
BanII GRGCYC 1 cut(s) 859
BarI GAAGNNNNNNTAC 2 cut(s) 957, 989
Bbv12I GWGCWC 2 cut(s) 322, 859
BbvI GCAGC 2 cut(s) 229, 890
BccI CCATC 4 cut(s) 196, 455, 730, 842
BceAI ACGGC 1 cut(s) 683
BciT130I CCWGG 1 cut(s) 312
BclI TGATCA 1 cut(s) 340
BcoDI GTCTC 1 cut(s) 109
BfaI CTAG 2 cut(s) 23, 714
BfmI CTRYAG 1 cut(s) 264
BfrI CTTAAG 2 cut(s) 250, 821
BisI GCNGC 3 cut(s) 5, 243, 904
BlsI GCNGC 3 cut(s) 6, 244, 905
Bme1390I CCNGG 1 cut(s) 312
BmeT110I CYCGRG 1 cut(s) 858
BmrFI CCNGG 1 cut(s) 312
BmsI GCATC 1 cut(s) 433
BpuEI CTTGAG 1 cut(s) 439
BsaBI GATNNNNATC 1 cut(s) 345
BsaJI CCNNGG 2 cut(s) 217, 354
Bsc4I CCNNNNNNNGG 1 cut(s) 203
Bse118I RCCGGY 1 cut(s) 559
Bse8I GATNNNNATC 1 cut(s) 345
BseBI CCWGG 1 cut(s) 312
BseDI CCNNGG 2 cut(s) 217, 354
BseGI GGATG 1 cut(s) 853
BseJI GATNNNNATC 1 cut(s) 345
BseLI CCNNNNNNNGG 1 cut(s) 203
BseMII CTCAG 1 cut(s) 597
BseRI GAGGAG 2 cut(s) 524, 689
BseSI GKGCMC 1 cut(s) 728
BseXI GCAGC 2 cut(s) 229, 890
BsgI GTGCAG 1 cut(s) 942
BshFI GGCC 1 cut(s) 563
BsiHKAI GWGCWC 2 cut(s) 322, 859
BsiHKCI CYCGRG 1 cut(s) 858
BsiSI CCGG 2 cut(s) 42, 560
BslFI GGGAC 1 cut(s) 914
BslI CCNNNNNNNGG 1 cut(s) 203
BsmAI GTCTC 1 cut(s) 109
BsmFI GGGAC 1 cut(s) 914
BsmI GAATGC 4 cut(s) 245, 307, 622, 950
BsnI GGCC 1 cut(s) 563
BsoBI CYCGRG 1 cut(s) 858
Bsp1286I GDGCHC 3 cut(s) 322, 728, 859
Bsp143I GATC 6 cut(s) 340, 346, 460, 530, 838, 988
Bsp19I CCATGG 2 cut(s) 217, 354
BspANI GGCC 1 cut(s) 563
BspCNI CTCAG 1 cut(s) 596
BspHI TCATGA 1 cut(s) 841
BspMAI CTGCAG 1 cut(s) 268
BspPI GGATC 2 cut(s) 341, 846
BspQI GCTCTTC 1 cut(s) 847
BspTI CTTAAG 2 cut(s) 250, 821
BsrFI RCCGGY 1 cut(s) 559
BssAI RCCGGY 1 cut(s) 559
BssECI CCNNGG 2 cut(s) 217, 354
BssMI GATC 6 cut(s) 340, 346, 460, 530, 838, 988
BssT1I CCWWGG 2 cut(s) 217, 354
Bst2UI CCWGG 1 cut(s) 312
Bst4CI ACNGT 1 cut(s) 92
Bst6I CTCTTC 1 cut(s) 847
BstAFI CTTAAG 2 cut(s) 250, 821
BstC8I GCNNGC 3 cut(s) 410, 561, 589
BstDEI CTNAG 1 cut(s) 583
BstDSI CCRYGG 2 cut(s) 217, 354
BstF5I GGATG 1 cut(s) 853
BstHHI GCGC 1 cut(s) 622
BstKTI GATC 6 cut(s) 343, 349, 463, 533, 841, 991
BstMAI GTCTC 1 cut(s) 109
BstMBI GATC 6 cut(s) 340, 346, 460, 530, 838, 988
BstMWI GCNNNNNNNGC 1 cut(s) 617
BstNI CCWGG 1 cut(s) 312
BstNSI RCATGY 2 cut(s) 595, 944
BstSCI CCNGG 1 cut(s) 310
BstSFI CTRYAG 1 cut(s) 264
BstSLI GKGCMC 1 cut(s) 728
BstV1I GCAGC 2 cut(s) 229, 890
BstX2I RGATCY 1 cut(s) 346
BstXI CCANNNNNNTGG 1 cut(s) 736
BstYI RGATCY 1 cut(s) 346
BsuRI GGCC 1 cut(s) 563
BtgI CCRYGG 2 cut(s) 217, 354
BtsCI GGATG 1 cut(s) 853
BtsIMutI CAGTG 1 cut(s) 88
Cac8I GCNNGC 3 cut(s) 410, 561, 589
CciI TCATGA 1 cut(s) 841
CfoI GCGC 1 cut(s) 622
Cfr10I RCCGGY 1 cut(s) 559
Csp6I GTAC 1 cut(s) 965
CviQI GTAC 1 cut(s) 965
DdeI CTNAG 1 cut(s) 583
DpnI GATC 6 cut(s) 342, 348, 462, 532, 840, 990
DpnII GATC 6 cut(s) 340, 346, 460, 530, 838, 988
Eam1104I CTCTTC 1 cut(s) 847
EarI CTCTTC 1 cut(s) 847
Ecl136II GAGCTC 1 cut(s) 857
Eco130I CCWWGG 2 cut(s) 217, 354
Eco24I GRGCYC 1 cut(s) 859
Eco53kI GAGCTC 1 cut(s) 857
Eco57I CTGAAG 1 cut(s) 393
Eco88I CYCGRG 1 cut(s) 858
EcoICRI GAGCTC 1 cut(s) 857
EcoRII CCWGG 1 cut(s) 310
EcoT14I CCWWGG 2 cut(s) 217, 354
EcoT38I GRGCYC 1 cut(s) 859
ErhI CCWWGG 2 cut(s) 217, 354
FaqI GGGAC 1 cut(s) 914
FbaI TGATCA 1 cut(s) 340
FblI GTMKAC 1 cut(s) 937
Fnu4HI GCNGC 3 cut(s) 5, 243, 904
FokI GGATG 1 cut(s) 860
FriOI GRGCYC 1 cut(s) 859
Fsp4HI GCNGC 3 cut(s) 5, 243, 904
FspAI RTGCGCAY 1 cut(s) 621
FspBI CTAG 2 cut(s) 23, 714
FspI TGCGCA 1 cut(s) 621
GlaI GCGC 1 cut(s) 621
GluI GCNGC 3 cut(s) 5, 243, 904
HaeIII GGCC 1 cut(s) 563
HapII CCGG 2 cut(s) 42, 560
HhaI GCGC 1 cut(s) 622
Hin6I GCGC 1 cut(s) 620
HinP1I GCGC 1 cut(s) 620
HincII GTYRAC 2 cut(s) 605, 971
HindII GTYRAC 2 cut(s) 605, 971
HindIII AAGCTT 1 cut(s) 437
HinfI GANTC 3 cut(s) 38, 269, 927
HpaII CCGG 2 cut(s) 42, 560
HphI GGTGA 3 cut(s) 149, 815, 874
Hpy166II GTNNAC 3 cut(s) 605, 938, 971
Hpy188I TCNGA 4 cut(s) 225, 373, 499, 988
Hpy188III TCNNGA 4 cut(s) 114, 344, 418, 842
Hpy8I GTNNAC 3 cut(s) 605, 938, 971
HpyCH4III ACNGT 1 cut(s) 92
HpyCH4IV ACGT 2 cut(s) 389, 967
HpyF10VI GCNNNNNNNGC 1 cut(s) 617
HpyF3I CTNAG 1 cut(s) 583
HpySE526I ACGT 2 cut(s) 389, 967
HspAI GCGC 1 cut(s) 620
KroI GCCGGC 1 cut(s) 559
KroNI GCCGGC 1 cut(s) 561
Ksp22I TGATCA 1 cut(s) 340
Kzo9I GATC 6 cut(s) 340, 346, 460, 530, 838, 988
LguI GCTCTTC 1 cut(s) 847
LmnI GCTCC 2 cut(s) 239, 325
LpnPI CCDG 9 cut(s) 55, 297, 324, 363, 394, 396, 573, 573, 909
Lsp1109I GCAGC 2 cut(s) 229, 890
LweI GCATC 1 cut(s) 433
MaeI CTAG 2 cut(s) 23, 714
MaeII ACGT 2 cut(s) 389, 967
MaeIII GTNAC 2 cut(s) 254, 790
MalI GATC 6 cut(s) 342, 348, 462, 532, 840, 990
MboI GATC 6 cut(s) 340, 346, 460, 530, 838, 988
MboII GAAGA 1 cut(s) 864
MfeI CAATTG 2 cut(s) 119, 228
MflI RGATCY 1 cut(s) 346
MhlI GDGCHC 3 cut(s) 322, 728, 859
MlyI GAGTC 1 cut(s) 936
MnlI CCTC 9 cut(s) 389, 502, 644, 667, 781, 793, 829, 838, 904
MroNI GCCGGC 1 cut(s) 559
MseI TTAA 8 cut(s) 185, 251, 554, 633, 645, 720, 732, 822
MslI CAYNNNNRTG 4 cut(s) 277, 468, 734, 846
MspA1I CMGCKG 1 cut(s) 587
MspCI CTTAAG 2 cut(s) 250, 821
MspI CCGG 2 cut(s) 42, 560
MspR9I CCNGG 1 cut(s) 312
MunI CAATTG 2 cut(s) 119, 228
Mva1269I GAATGC 4 cut(s) 245, 307, 622, 950
MvaI CCWGG 1 cut(s) 312
MwoI GCNNNNNNNGC 1 cut(s) 617
NaeI GCCGGC 1 cut(s) 561
NcoI CCATGG 2 cut(s) 217, 354
NdeII GATC 6 cut(s) 340, 346, 460, 530, 838, 988
NgoMIV GCCGGC 1 cut(s) 559
NmuCI GTSAC 1 cut(s) 254
NsbI TGCGCA 1 cut(s) 621
NspI RCATGY 2 cut(s) 595, 944
PagI TCATGA 1 cut(s) 841
PciI ACATGT 1 cut(s) 940
PciSI GCTCTTC 1 cut(s) 847
PctI GAATGC 4 cut(s) 245, 307, 622, 950
PdiI GCCGGC 1 cut(s) 561
PfeI GAWTC 2 cut(s) 38, 269
PkrI GCNGC 3 cut(s) 6, 244, 905
PleI GAGTC 1 cut(s) 935
PpsI GAGTC 1 cut(s) 935
PscI ACATGT 1 cut(s) 940
PshBI ATTAAT 1 cut(s) 554
Psp124BI GAGCTC 1 cut(s) 859
Psp6I CCWGG 1 cut(s) 310
PspGI CCWGG 1 cut(s) 310
PsrI GAACNNNNNNTAC 2 cut(s) 761, 793
PstI CTGCAG 1 cut(s) 268
PsuI RGATCY 1 cut(s) 346
PvuII CAGCTG 1 cut(s) 587
RsaI GTAC 1 cut(s) 966
RsaNI GTAC 1 cut(s) 965
RseI CAYNNNNRTG 4 cut(s) 277, 468, 734, 846
SacI GAGCTC 1 cut(s) 859
SapI GCTCTTC 1 cut(s) 847
SaqAI TTAA 8 cut(s) 185, 251, 554, 633, 645, 720, 732, 822
SatI GCNGC 3 cut(s) 5, 243, 904
Sau3AI GATC 6 cut(s) 340, 346, 460, 530, 838, 988
SchI GAGTC 1 cut(s) 936
ScrFI CCNGG 1 cut(s) 312
SduI GDGCHC 3 cut(s) 322, 728, 859
SfaNI GCATC 1 cut(s) 433
SfcI CTRYAG 1 cut(s) 264
SmiMI CAYNNNNRTG 4 cut(s) 277, 468, 734, 846
SmlI CTYRAG 3 cut(s) 250, 418, 821
SmoI CTYRAG 3 cut(s) 250, 418, 821
SspMI CTAG 2 cut(s) 23, 714
SstI GAGCTC 1 cut(s) 859
StyD4I CCNGG 1 cut(s) 310
StyI CCWWGG 2 cut(s) 217, 354
TaaI ACNGT 1 cut(s) 92
TaiI ACGT 2 cut(s) 392, 970
TaqI TCGA 3 cut(s) 102, 113, 649
TfiI GAWTC 2 cut(s) 38, 269
Tru1I TTAA 8 cut(s) 185, 251, 554, 633, 645, 720, 732, 822
Tru9I TTAA 8 cut(s) 185, 251, 554, 633, 645, 720, 732, 822
TscAI CASTG 1 cut(s) 95
TseFI GTSAC 1 cut(s) 254
TseI GCWGC 3 cut(s) 4, 242, 903
Tsp45I GTSAC 1 cut(s) 254
TspDTI ATGAA 5 cut(s) 261, 383, 584, 675, 965
TspGWI ACGGA 1 cut(s) 781
TspRI CASTG 1 cut(s) 95
Vha464I CTTAAG 2 cut(s) 250, 821
VspI ATTAAT 1 cut(s) 554
XapI RAATTY 1 cut(s) 293
XceI RCATGY 2 cut(s) 595, 944
XmiI GTMKAC 1 cut(s) 937
XspI CTAG 2 cut(s) 23, 714
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.