Rmu_sc0012046.1_g000002

Protein FAR1-RELATED SEQUENCE 5-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0012046.1
OG0000164
Physical Location & Seq
Reverse (-)
8925 .. 9863
939 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0012046.1_g000002.1.cds

Sequence Viewer

Length: 939 bp
atggagtcacaacaaagtttcgatgacactgctatctattgtcctcaagtgaaggttgatctgattcctgtaaagaaccaagaatttcatacactagaagacgttgagacgttttacaaaagctatgcaaaagaatcagggtttgatgtcaaaagttttactagcgagaagaagaatggtgtgattgtaagaaaggcgtatgtgtgctctaaacaaggaacatcaaaggtaacaggaaagaaaagaaataggaatcgaacaagagtaaattgcaaggcaagaatagtagttgtaagacgtgctacgatcggcaaatatgttatcactatttttgatgagggtcacagtcatcctttaactaccccacgaagaaaacatctgacaaagatccatcgtgaggtttcatcgattcataaatcattaacgaaacaactgactgcagtcaatgtgccaacatgtacacaatttgactttcttggagtgcattcaggaggagtagaaaacattgggtgcttgcaacaagatatttataactacaaaagggattgtcgcaaagaggtgaaggggcatgatggagatatgttgcatgagtacttcctgttggagaaagaaaaagatccttcattaattttcaaaatagaggctgataacgagaacaggatcacacatatcttttgggctgatgcaatttctagacgatcttacaagttttatggtgatgttgtaatatttgacacaacttacaataccaatatgtattcgttgatctttgcacctttggtgggagtaaataatcatgggcagataataattttggcttgtgcattcttaagcaatgagacaactgattcttttgtttggttctttaaagaatttttagatgcaatgccaggtgatgctcttagtaggtttgatagaccagtatatgcctcctattaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE SWIM

Protein Analysis

312

Amino Acids

35.9

Weight (kDa)

8.9

Isoelectric Point (pI)

43.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000164)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02320 FvH4_1g21472 FvH4_2g00813 FvH4_2g02512 FvH4_2g03921 FvH4_2g23460 FvH4_3g29141 FvH4_4g05791 FvH4_4g06321 FvH4_4g15595 FvH4_4g18162 FvH4_4g18163 FvH4_4g29541 FvH4_4g29541 FvH4_4g29541 FvH4_4g29541 FvH4_4g29541 FvH4_5g31093 FvH4_6g01982 FvH4_6g21931 FvH4_6g44691 FvH4_6g48541
prunus_persica Prupe.1G074100_v2.0.a1 Prupe.3G021400_v2.0.a1
pyrus_communis pycom02g18570 pycom14g00670
rosa_chinensis RchiOBHm_Chr1g0379201 RchiOBHm_Chr1g0379361 RchiOBHm_Chr4g0405981 RchiOBHm_Chr5g0073641 RchiOBHm_Chr5g0073651 RchiOBHm_Chr7g0236661
rosa_multiflora Rmu_co8179562.1_g000001 Rmu_co8343647.1_g000001 Rmu_sc0000041.1_g000017 Rmu_sc0000114.1_g000020 Rmu_sc0000286.1_g000006 Rmu_sc0000308.1_g000038 Rmu_sc0000365.1_g000061 Rmu_sc0000365.1_g000062 Rmu_sc0000538.1_g000060 Rmu_sc0000538.1_g000061 Rmu_sc0000586.1_g000016 Rmu_sc0000898.1_g000007 Rmu_sc0000913.1_g000003 Rmu_sc0000913.1_g000004 Rmu_sc0000996.1_g000006 Rmu_sc0000996.1_g000007 Rmu_sc0000998.1_g000003 Rmu_sc0001350.1_g000009 Rmu_sc0002079.1_g000009 Rmu_sc0002200.1_g000013 Rmu_sc0002226.1_g000025 Rmu_sc0002279.1_g000014 Rmu_sc0002478.1_g000014 Rmu_sc0002717.1_g000004 Rmu_sc0002868.1_g000027 Rmu_sc0002889.1_g000043 Rmu_sc0003023.1_g000001 Rmu_sc0003110.1_g000006 Rmu_sc0003226.1_g000028 Rmu_sc0003226.1_g000029 Rmu_sc0003337.1_g000053 Rmu_sc0003558.1_g000007 Rmu_sc0004345.1_g000014 Rmu_sc0004383.1_g000007 Rmu_sc0004888.1_g000021 Rmu_sc0005114.1_g000012 Rmu_sc0005223.1_g000019 Rmu_sc0005223.1_g000020 Rmu_sc0005639.1_g000025 Rmu_sc0005685.1_g000027 Rmu_sc0005992.1_g000002 Rmu_sc0006326.1_g000034 Rmu_sc0006326.1_g000035 Rmu_sc0007390.1_g000012 Rmu_sc0007451.1_g000006 Rmu_sc0007825.1_g000003 Rmu_sc0008600.1_g000023 Rmu_sc0009291.1_g000003 Rmu_sc0012046.1_g000001 Rmu_sc0012046.1_g000002 Rmu_sc0012710.1_g000001 Rmu_sc0015238.1_g000001 Rmu_sc0016125.1_g000003 Rmu_sc0016175.1_g000001 Rmu_sc0016898.1_g000001 Rmu_sc0017323.1_g000010 Rmu_sc0017874.1_g000002 Rmu_sc0019167.1_g000001 Rmu_sc0020815.1_g000006 Rmu_sc0025564.1_g000001 Rmu_sc0026418.1_g000001 Rmu_sc0035188.1_g000002 Rmu_sc0039254.1_g000001 Rmu_ssc0000120.1_g000015 Rmu_ssc0000120.1_g000016 Rmu_ssc0000330.1_g000023 Rmu_ssc0000433.1_g000004
rosa_roxburghii Rroxscaffold_1G00047130 Rroxscaffold_1G00051320 Rroxscaffold_1G00056600 Rroxscaffold_2G00109650 Rroxscaffold_2G00119980 Rroxscaffold_3G00222550 Rroxscaffold_3G00224980 Rroxscaffold_3G00251020 Rroxscaffold_6G00411190 Rroxscaffold_7G00166520 Rroxscaffold_7G00172920 Rroxscaffold_7G00191860 Rroxscaffold_7G00194430
rosa_rugosa Rorug01G0198900 Rorug01G0217300 Rorug01G0244500 Rorug02G0147400 Rorug02G0152200 Rorug02G0595500 Rorug02G0595600 Rorug03G0060500 Rorug03G0203000 Rorug03G0285800 Rorug04G0027200 Rorug04G0027300 Rorug04G0225800 Rorug05G0073400 Rorug05G0213300 Rorug05G0324600 Rorug05G0390900 Rorug05G0391000 Rorug05G0391100 Rorug05G0391200 Rorug05G0462900 Rorug05G0473000 Rorug06G0256500 Rorug07G0199000 Rorug07G0208800 Rorug07G0208800 Rorug07G0316600 Rorug07G0316700
rosa_samantha Rh2BG532400 Rh2CG581900 Rh3CG322600 Rh6AG079900 Rh6AG250800 Rh6AG496300 Rh6BG506100 Rh6CG126000 Rh6CG511700 Rh6DG109400 Rh6DG112700 Rh7CG104500 Rh7CG322000 Rh7CG431500
rosa_wichuraiana Rw0G020410 Rw1G009190 Rw1G014580 Rw1G021000 Rw1G022190 Rw2G025900 Rw2G029920 Rw2G037530 Rw3G018560 Rw3G020560 Rw4G008500 Rw4G022520 Rw5G019030 Rw5G031180 Rw5G044830 Rw6G005010 Rw6G006890 Rw6G011330 Rw6G011380 Rw6G023900 Rw7G028490 Rw7G030170 Rw7G030370 Rw7G032030 Rw7G032040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 531
AclWI GGATC 3 cut(s) 382, 611, 668
AcsI RAATTY 2 cut(s) 83, 872
AfaI GTAC 2 cut(s) 460, 593
AfiI CCNNNNNNNGG 2 cut(s) 397, 782
AflII CTTAAG 1 cut(s) 829
AflIII ACRYGT 1 cut(s) 455
AgsI TTSAA 1 cut(s) 634
AjiI CACGTC 1 cut(s) 299
AjnI CCWGG 1 cut(s) 889
AluBI AGCT 1 cut(s) 123
AluI AGCT 1 cut(s) 123
Alw21I GWGCWC 1 cut(s) 209
Alw26I GTCTC 2 cut(s) 101, 833
AlwI GGATC 3 cut(s) 382, 611, 668
ApoI RAATTY 2 cut(s) 83, 872
AseI ATTAAT 1 cut(s) 626
AsuHPI GGTGA 3 cut(s) 571, 728, 905
BbsI GAAGAC 1 cut(s) 105
Bbv12I GWGCWC 1 cut(s) 209
BccI CCATC 2 cut(s) 399, 566
BcgI CGANNNNNNTGC 2 cut(s) 11, 45
BciT130I CCWGG 1 cut(s) 891
BcoDI GTCTC 2 cut(s) 101, 833
BfaI CTAG 3 cut(s) 95, 162, 693
BfmI CTRYAG 1 cut(s) 438
BfrI CTTAAG 1 cut(s) 829
BmcAI AGTACT 1 cut(s) 593
Bme1390I CCNGG 1 cut(s) 891
BmgBI CACGTC 1 cut(s) 299
BmrFI CCNGG 1 cut(s) 891
BmsI GCATC 3 cut(s) 673, 871, 886
BoxI GACNNNNGTC 1 cut(s) 440
BpiI GAAGAC 1 cut(s) 105
BpuEI CTTGAG 1 cut(s) 30
Bsa29I ATCGAT 1 cut(s) 407
Bsc4I CCNNNNNNNGG 2 cut(s) 397, 782
Bse1I ACTGG 1 cut(s) 920
Bse3DI GCAATG 2 cut(s) 841, 891
BseBI CCWGG 1 cut(s) 891
BseCI ATCGAT 1 cut(s) 407
BseGI GGATG 1 cut(s) 349
BseLI CCNNNNNNNGG 2 cut(s) 397, 782
BseMI GCAATG 2 cut(s) 841, 891
BseNI ACTGG 1 cut(s) 920
BseRI GAGGAG 1 cut(s) 507
Bsh1285I CGRYCG 1 cut(s) 309
BshVI ATCGAT 1 cut(s) 407
BsiEI CGRYCG 1 cut(s) 309
BsiHKAI GWGCWC 1 cut(s) 209
BslI CCNNNNNNNGG 2 cut(s) 397, 782
BsmAI GTCTC 2 cut(s) 101, 833
BsmBI CGTCTC 1 cut(s) 101
BsmI GAATGC 2 cut(s) 484, 824
Bsp1286I GDGCHC 1 cut(s) 209
Bsp1407I TGTACA 1 cut(s) 458
Bsp143I GATC 7 cut(s) 58, 306, 387, 616, 660, 698, 765
BspDI ATCGAT 1 cut(s) 407
BspMAI CTGCAG 1 cut(s) 442
BspPI GGATC 3 cut(s) 382, 611, 668
BspTI CTTAAG 1 cut(s) 829
BsrDI GCAATG 2 cut(s) 841, 891
BsrGI TGTACA 1 cut(s) 458
BsrI ACTGG 1 cut(s) 920
BssMI GATC 7 cut(s) 58, 306, 387, 616, 660, 698, 765
Bst2UI CCWGG 1 cut(s) 891
Bst4CI ACNGT 1 cut(s) 347
BstAFI CTTAAG 1 cut(s) 829
BstAUI TGTACA 1 cut(s) 458
BstC8I GCNNGC 1 cut(s) 515
BstDEI CTNAG 1 cut(s) 902
BstF5I GGATG 1 cut(s) 349
BstKTI GATC 7 cut(s) 61, 309, 390, 619, 663, 701, 768
BstMAI GTCTC 2 cut(s) 101, 833
BstMBI GATC 7 cut(s) 58, 306, 387, 616, 660, 698, 765
BstMCI CGRYCG 1 cut(s) 309
BstNI CCWGG 1 cut(s) 891
BstNSI RCATGY 1 cut(s) 459
BstPAI GACNNNNGTC 1 cut(s) 440
BstSCI CCNGG 1 cut(s) 889
BstSFI CTRYAG 1 cut(s) 438
BstV2I GAAGAC 1 cut(s) 105
BstX2I RGATCY 2 cut(s) 387, 616
BstYI RGATCY 2 cut(s) 387, 616
Bsu15I ATCGAT 1 cut(s) 407
BsuTUI ATCGAT 1 cut(s) 407
BtrI CACGTC 1 cut(s) 299
BtsCI GGATG 1 cut(s) 349
BtsI GCAGTG 1 cut(s) 27
BtsIMutI CAGTG 1 cut(s) 27
Cac8I GCNNGC 1 cut(s) 515
ClaI ATCGAT 1 cut(s) 407
Csp6I GTAC 2 cut(s) 459, 592
CviAII CATG 4 cut(s) 456, 569, 587, 797
CviJI RGCY 4 cut(s) 123, 644, 680, 818
CviKI_1 RGCY 4 cut(s) 123, 644, 680, 818
CviQI GTAC 2 cut(s) 459, 592
DdeI CTNAG 1 cut(s) 902
DpnI GATC 7 cut(s) 60, 308, 389, 618, 662, 700, 767
DpnII GATC 7 cut(s) 58, 306, 387, 616, 660, 698, 765
DraI TTTAAA 1 cut(s) 868
EcoRII CCWGG 1 cut(s) 889
Esp3I CGTCTC 1 cut(s) 101
FaeI CATG 4 cut(s) 459, 572, 590, 800
FatI CATG 4 cut(s) 455, 568, 586, 796
FokI GGATG 1 cut(s) 336
FspBI CTAG 3 cut(s) 95, 162, 693
Hin1II CATG 4 cut(s) 459, 572, 590, 800
HinfI GANTC 6 cut(s) 5, 64, 134, 253, 409, 848
HphI GGTGA 3 cut(s) 571, 728, 905
Hpy166II GTNNAC 1 cut(s) 461
Hpy188I TCNGA 2 cut(s) 63, 381
Hpy188III TCNNGA 3 cut(s) 395, 489, 693
Hpy8I GTNNAC 1 cut(s) 461
HpyAV CCTTC 3 cut(s) 46, 556, 630
HpyCH4III ACNGT 1 cut(s) 347
HpyCH4IV ACGT 3 cut(s) 102, 110, 298
HpyF3I CTNAG 1 cut(s) 902
HpySE526I ACGT 3 cut(s) 102, 110, 298
Hsp92II CATG 4 cut(s) 459, 572, 590, 800
Kzo9I GATC 7 cut(s) 58, 306, 387, 616, 660, 698, 765
LpnPI CCDG 9 cut(s) 81, 123, 219, 474, 611, 643, 876, 903, 933
LweI GCATC 3 cut(s) 673, 871, 886
MaeI CTAG 3 cut(s) 95, 162, 693
MaeII ACGT 3 cut(s) 102, 110, 298
MaeIII GTNAC 3 cut(s) 6, 229, 341
MalI GATC 7 cut(s) 60, 308, 389, 618, 662, 700, 767
MboI GATC 7 cut(s) 58, 306, 387, 616, 660, 698, 765
MboII GAAGA 4 cut(s) 110, 181, 184, 381
MflI RGATCY 2 cut(s) 387, 616
MhlI GDGCHC 1 cut(s) 209
MluCI AATT 7 cut(s) 83, 268, 464, 627, 687, 810, 872
MlyI GAGTC 1 cut(s) 14
MmeI TCCRAC 1 cut(s) 582
MnlI CCTC 6 cut(s) 54, 331, 391, 485, 550, 634
MseI TTAA 6 cut(s) 356, 422, 626, 830, 867, 937
MspCI CTTAAG 1 cut(s) 829
MspR9I CCNGG 1 cut(s) 891
Mva1269I GAATGC 2 cut(s) 484, 824
MvaI CCWGG 1 cut(s) 891
NdeII GATC 7 cut(s) 58, 306, 387, 616, 660, 698, 765
NlaIII CATG 4 cut(s) 459, 572, 590, 800
NmuCI GTSAC 2 cut(s) 6, 341
NspI RCATGY 1 cut(s) 459
PciI ACATGT 1 cut(s) 455
PctI GAATGC 2 cut(s) 484, 824
PfeI GAWTC 5 cut(s) 64, 134, 253, 409, 848
Ple19I CGATCG 1 cut(s) 309
PleI GAGTC 1 cut(s) 13
PpsI GAGTC 1 cut(s) 13
PscI ACATGT 1 cut(s) 455
PshAI GACNNNNGTC 1 cut(s) 440
PshBI ATTAAT 1 cut(s) 626
PsiI TTATAA 1 cut(s) 531
Psp6I CCWGG 1 cut(s) 889
PspGI CCWGG 1 cut(s) 889
PstI CTGCAG 1 cut(s) 442
PsuI RGATCY 2 cut(s) 387, 616
PvuI CGATCG 1 cut(s) 309
RsaI GTAC 2 cut(s) 460, 593
RsaNI GTAC 2 cut(s) 459, 592
SaqAI TTAA 6 cut(s) 356, 422, 626, 830, 867, 937
Sau3AI GATC 7 cut(s) 58, 306, 387, 616, 660, 698, 765
ScaI AGTACT 1 cut(s) 593
SchI GAGTC 1 cut(s) 14
ScrFI CCNGG 1 cut(s) 891
SduI GDGCHC 1 cut(s) 209
SfaNI GCATC 3 cut(s) 673, 871, 886
SfcI CTRYAG 1 cut(s) 438
SmlI CTYRAG 2 cut(s) 45, 829
SmoI CTYRAG 2 cut(s) 45, 829
Sse9I AATT 7 cut(s) 83, 268, 464, 627, 687, 810, 872
SspI AATATT 1 cut(s) 729
SspMI CTAG 3 cut(s) 95, 162, 693
StyD4I CCNGG 1 cut(s) 889
TaaI ACNGT 1 cut(s) 347
TaiI ACGT 3 cut(s) 105, 113, 301
TaqI TCGA 3 cut(s) 21, 256, 407
TasI AATT 7 cut(s) 83, 268, 464, 627, 687, 810, 872
TatI WGTACW 2 cut(s) 458, 591
TfiI GAWTC 5 cut(s) 64, 134, 253, 409, 848
Tru1I TTAA 6 cut(s) 356, 422, 626, 830, 867, 937
Tru9I TTAA 6 cut(s) 356, 422, 626, 830, 867, 937
TscAI CASTG 1 cut(s) 34
TseFI GTSAC 2 cut(s) 6, 341
Tsp45I GTSAC 2 cut(s) 6, 341
TspDTI ATGAA 4 cut(s) 77, 393, 401, 612
TspRI CASTG 1 cut(s) 34
Vha464I CTTAAG 1 cut(s) 829
VspI ATTAAT 1 cut(s) 626
XapI RAATTY 2 cut(s) 83, 872
XbaI TCTAGA 1 cut(s) 692
XceI RCATGY 1 cut(s) 459
XspI CTAG 3 cut(s) 95, 162, 693
ZrmI AGTACT 1 cut(s) 593
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.