Rorug05G0391000

Protein FAR1-RELATED SEQUENCE 5-like

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
Physical Location & Seq
Forward (+)
53284901 .. 53286118
1218 bp
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UTR
Exon/CDS
Intron
Rorug05G0391000.1

Sequence Viewer

Length: 318 bp
ATGGAGAATATGATGAACAAGATCCGGAATTTGGTCGCATACCCCGAAATCAACGAAGATTTCTACAGCCGTACCCTCTCCGGCGGCGTCATCACTCTCGCCTTCTCCATCGTTATGCTCCTGCTCTTCTCCGAGAGCCATATCTACGAGTACGGGAGAATCTCACTGTTTTTGCTTCCTTCATTGGTCAATTCGACCAGGTATAAGAAAGTTGGGTACTTGAATACTGATGTTGGGCAACCTGAGTTCAGTCCTCCTGGGTTTCTATCTCTCCTTGTGCTACATGAAGTCACTCCAGGAGTTTTGGTTGGAGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

105

Amino Acids

11.77

Weight (kDa)

5.55

Isoelectric Point (pI)

36.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ERGIC_N PF13850 9 - 45 7.2e-06 Endoplasmic Reticulum-Golgi Intermediate Compartment (ERGIC)
CLP1_P PF16575 57 - 97 2.4e-06 mRNA cleavage and polyadenylation factor CLP1 P-loop
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000164)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02320 FvH4_1g21472 FvH4_2g00813 FvH4_2g02512 FvH4_2g03921 FvH4_2g23460 FvH4_3g29141 FvH4_4g05791 FvH4_4g06321 FvH4_4g15595 FvH4_4g18162 FvH4_4g18163 FvH4_4g29541 FvH4_4g29541 FvH4_4g29541 FvH4_4g29541 FvH4_4g29541 FvH4_5g31093 FvH4_6g01982 FvH4_6g21931 FvH4_6g44691 FvH4_6g48541
prunus_persica Prupe.1G074100_v2.0.a1 Prupe.3G021400_v2.0.a1
pyrus_communis pycom02g18570 pycom14g00670
rosa_chinensis RchiOBHm_Chr1g0379201 RchiOBHm_Chr1g0379361 RchiOBHm_Chr4g0405981 RchiOBHm_Chr5g0073641 RchiOBHm_Chr5g0073651 RchiOBHm_Chr7g0236661
rosa_multiflora Rmu_co8179562.1_g000001 Rmu_co8343647.1_g000001 Rmu_sc0000041.1_g000017 Rmu_sc0000114.1_g000020 Rmu_sc0000286.1_g000006 Rmu_sc0000308.1_g000038 Rmu_sc0000365.1_g000061 Rmu_sc0000365.1_g000062 Rmu_sc0000538.1_g000060 Rmu_sc0000538.1_g000061 Rmu_sc0000586.1_g000016 Rmu_sc0000898.1_g000007 Rmu_sc0000913.1_g000003 Rmu_sc0000913.1_g000004 Rmu_sc0000996.1_g000006 Rmu_sc0000996.1_g000007 Rmu_sc0000998.1_g000003 Rmu_sc0001350.1_g000009 Rmu_sc0002079.1_g000009 Rmu_sc0002200.1_g000013 Rmu_sc0002226.1_g000025 Rmu_sc0002279.1_g000014 Rmu_sc0002478.1_g000014 Rmu_sc0002717.1_g000004 Rmu_sc0002868.1_g000027 Rmu_sc0002889.1_g000043 Rmu_sc0003023.1_g000001 Rmu_sc0003110.1_g000006 Rmu_sc0003226.1_g000028 Rmu_sc0003226.1_g000029 Rmu_sc0003337.1_g000053 Rmu_sc0003558.1_g000007 Rmu_sc0004345.1_g000014 Rmu_sc0004383.1_g000007 Rmu_sc0004888.1_g000021 Rmu_sc0005114.1_g000012 Rmu_sc0005223.1_g000019 Rmu_sc0005223.1_g000020 Rmu_sc0005639.1_g000025 Rmu_sc0005685.1_g000027 Rmu_sc0005992.1_g000002 Rmu_sc0006326.1_g000034 Rmu_sc0006326.1_g000035 Rmu_sc0007390.1_g000012 Rmu_sc0007451.1_g000006 Rmu_sc0007825.1_g000003 Rmu_sc0008600.1_g000023 Rmu_sc0009291.1_g000003 Rmu_sc0012046.1_g000001 Rmu_sc0012046.1_g000002 Rmu_sc0012710.1_g000001 Rmu_sc0015238.1_g000001 Rmu_sc0016125.1_g000003 Rmu_sc0016175.1_g000001 Rmu_sc0016898.1_g000001 Rmu_sc0017323.1_g000010 Rmu_sc0017874.1_g000002 Rmu_sc0019167.1_g000001 Rmu_sc0020815.1_g000006 Rmu_sc0025564.1_g000001 Rmu_sc0026418.1_g000001 Rmu_sc0035188.1_g000002 Rmu_sc0039254.1_g000001 Rmu_ssc0000120.1_g000015 Rmu_ssc0000120.1_g000016 Rmu_ssc0000330.1_g000023 Rmu_ssc0000433.1_g000004
rosa_roxburghii Rroxscaffold_1G00047130 Rroxscaffold_1G00051320 Rroxscaffold_1G00056600 Rroxscaffold_2G00109650 Rroxscaffold_2G00119980 Rroxscaffold_3G00222550 Rroxscaffold_3G00224980 Rroxscaffold_3G00251020 Rroxscaffold_6G00411190 Rroxscaffold_7G00166520 Rroxscaffold_7G00172920 Rroxscaffold_7G00191860 Rroxscaffold_7G00194430
rosa_rugosa Rorug01G0198900 Rorug01G0217300 Rorug01G0244500 Rorug02G0147400 Rorug02G0152200 Rorug02G0595500 Rorug02G0595600 Rorug03G0060500 Rorug03G0203000 Rorug03G0285800 Rorug04G0027200 Rorug04G0027300 Rorug04G0225800 Rorug05G0073400 Rorug05G0213300 Rorug05G0324600 Rorug05G0390900 Rorug05G0391000 Rorug05G0391100 Rorug05G0391200 Rorug05G0462900 Rorug05G0473000 Rorug06G0256500 Rorug07G0199000 Rorug07G0208800 Rorug07G0208800 Rorug07G0316600 Rorug07G0316700
rosa_samantha Rh2BG532400 Rh2CG581900 Rh3CG322600 Rh6AG079900 Rh6AG250800 Rh6AG496300 Rh6BG506100 Rh6CG126000 Rh6CG511700 Rh6DG109400 Rh6DG112700 Rh7CG104500 Rh7CG322000 Rh7CG431500
rosa_wichuraiana Rw0G020410 Rw1G009190 Rw1G014580 Rw1G021000 Rw1G022190 Rw2G025900 Rw2G029920 Rw2G037530 Rw3G018560 Rw3G020560 Rw4G008500 Rw4G022520 Rw5G019030 Rw5G031180 Rw5G044830 Rw6G005010 Rw6G006890 Rw6G011330 Rw6G011380 Rw6G023900 Rw7G028490 Rw7G030170 Rw7G030370 Rw7G032030 Rw7G032040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 24
AciI CCGC 1 cut(s) 84
AclWI GGATC 1 cut(s) 16
AcsI RAATTY 1 cut(s) 28
AcyI GRCGYC 1 cut(s) 87
AfaI GTAC 3 cut(s) 73, 152, 218
AfiI CCNNNNNNNGG 1 cut(s) 31
AgsI TTSAA 1 cut(s) 223
AjnI CCWGG 3 cut(s) 197, 256, 295
AlwI GGATC 1 cut(s) 16
Aor13HI TCCGGA 1 cut(s) 24
ApoI RAATTY 1 cut(s) 28
BaeI ACNNNNGTAYC 2 cut(s) 55, 88
BccI CCATC 1 cut(s) 116
BceAI ACGGC 1 cut(s) 54
BciT130I CCWGG 3 cut(s) 199, 258, 297
BfmI CTRYAG 1 cut(s) 64
BisI GCNGC 1 cut(s) 85
BlsI GCNGC 1 cut(s) 86
Bme1390I CCNGG 3 cut(s) 199, 258, 297
BmrFI CCNGG 3 cut(s) 199, 258, 297
BpmI CTGGAG 1 cut(s) 279
BsaHI GRCGYC 1 cut(s) 87
BsaJI CCNNGG 1 cut(s) 257
BsaWI WCCGGW 1 cut(s) 24
BsaXI ACNNNNNCTCC 1 cut(s) 291
Bsc4I CCNNNNNNNGG 1 cut(s) 31
BseAI TCCGGA 1 cut(s) 24
BseBI CCWGG 3 cut(s) 199, 258, 297
BseDI CCNNGG 1 cut(s) 257
BseLI CCNNNNNNNGG 1 cut(s) 31
BseMII CTCAG 1 cut(s) 234
BsiSI CCGG 2 cut(s) 25, 81
BslI CCNNNNNNNGG 1 cut(s) 31
Bsp13I TCCGGA 1 cut(s) 24
Bsp143I GATC 1 cut(s) 21
BspACI CCGC 1 cut(s) 84
BspCNI CTCAG 1 cut(s) 235
BspEI TCCGGA 1 cut(s) 24
BspPI GGATC 1 cut(s) 16
BspQI GCTCTTC 1 cut(s) 131
BssECI CCNNGG 1 cut(s) 257
BssMI GATC 1 cut(s) 21
BssNI GRCGYC 1 cut(s) 87
Bst2UI CCWGG 3 cut(s) 199, 258, 297
Bst4CI ACNGT 1 cut(s) 168
Bst6I CTCTTC 1 cut(s) 131
BstACI GRCGYC 1 cut(s) 87
BstDEI CTNAG 1 cut(s) 243
BstKTI GATC 1 cut(s) 24
BstMBI GATC 1 cut(s) 21
BstNI CCWGG 3 cut(s) 199, 258, 297
BstSCI CCNGG 3 cut(s) 197, 256, 295
BstSFI CTRYAG 1 cut(s) 64
BstX2I RGATCY 1 cut(s) 21
BstYI RGATCY 1 cut(s) 21
BtsIMutI CAGTG 1 cut(s) 164
CseI GACGC 1 cut(s) 76
CsiI ACCWGGT 1 cut(s) 197
Csp6I GTAC 3 cut(s) 72, 151, 217
CviAII CATG 1 cut(s) 284
CviJI RGCY 2 cut(s) 69, 138
CviKI_1 RGCY 2 cut(s) 69, 138
CviQI GTAC 3 cut(s) 72, 151, 217
DdeI CTNAG 1 cut(s) 243
DpnI GATC 1 cut(s) 23
DpnII GATC 1 cut(s) 21
Eam1104I CTCTTC 1 cut(s) 131
EarI CTCTTC 1 cut(s) 131
EcoRII CCWGG 3 cut(s) 197, 256, 295
FaeI CATG 1 cut(s) 287
FaiI YATR 6 cut(s) 11, 40, 116, 141, 204, 285
FatI CATG 1 cut(s) 283
Fnu4HI GCNGC 1 cut(s) 85
Fsp4HI GCNGC 1 cut(s) 85
GluI GCNGC 1 cut(s) 85
GsuI CTGGAG 1 cut(s) 279
HapII CCGG 2 cut(s) 25, 81
HgaI GACGC 1 cut(s) 76
Hin1I GRCGYC 1 cut(s) 87
Hin1II CATG 1 cut(s) 287
HinfI GANTC 1 cut(s) 159
HpaII CCGG 2 cut(s) 25, 81
Hpy188I TCNGA 1 cut(s) 133
Hpy188III TCNNGA 1 cut(s) 25
HpyAV CCTTC 2 cut(s) 112, 189
HpyCH4III ACNGT 1 cut(s) 168
HpyF3I CTNAG 1 cut(s) 243
Hsp92I GRCGYC 1 cut(s) 87
Hsp92II CATG 1 cut(s) 287
Kpn2I TCCGGA 1 cut(s) 24
Kzo9I GATC 1 cut(s) 21
LguI GCTCTTC 1 cut(s) 131
LmnI GCTCC 1 cut(s) 123
MabI ACCWGGT 1 cut(s) 197
MaeIII GTNAC 1 cut(s) 289
MalI GATC 1 cut(s) 23
MboI GATC 1 cut(s) 21
MboII GAAGA 2 cut(s) 68, 118
MflI RGATCY 1 cut(s) 21
MluCI AATT 2 cut(s) 28, 190
MmeI TCCRAC 1 cut(s) 289
MnlI CCTC 2 cut(s) 86, 264
MroI TCCGGA 1 cut(s) 24
MseI TTAA 1 cut(s) 316
MslI CAYNNNNRTG 1 cut(s) 113
MspI CCGG 2 cut(s) 25, 81
MspR9I CCNGG 3 cut(s) 199, 258, 297
MvaI CCWGG 3 cut(s) 199, 258, 297
NdeII GATC 1 cut(s) 21
NlaIII CATG 1 cut(s) 287
NmuCI GTSAC 1 cut(s) 289
PciSI GCTCTTC 1 cut(s) 131
PcsI WCGNNNNNNNCGW 1 cut(s) 42
PfeI GAWTC 1 cut(s) 159
PfoI TCCNGGA 1 cut(s) 295
PkrI GCNGC 1 cut(s) 86
Psp6I CCWGG 3 cut(s) 197, 256, 295
PspGI CCWGG 3 cut(s) 197, 256, 295
PsuI RGATCY 1 cut(s) 21
RsaI GTAC 3 cut(s) 73, 152, 218
RsaNI GTAC 3 cut(s) 72, 151, 217
RseI CAYNNNNRTG 1 cut(s) 113
SapI GCTCTTC 1 cut(s) 131
SaqAI TTAA 1 cut(s) 316
SatI GCNGC 1 cut(s) 85
Sau3AI GATC 1 cut(s) 21
ScrFI CCNGG 3 cut(s) 199, 258, 297
SetI ASST 2 cut(s) 203, 244
SexAI ACCWGGT 1 cut(s) 197
SfcI CTRYAG 1 cut(s) 64
SmiMI CAYNNNNRTG 1 cut(s) 113
Sse9I AATT 2 cut(s) 28, 190
SsiI CCGC 1 cut(s) 84
StyD4I CCNGG 3 cut(s) 197, 256, 295
TaaI ACNGT 1 cut(s) 168
TaqI TCGA 1 cut(s) 194
TasI AATT 2 cut(s) 28, 190
TauI GCSGC 1 cut(s) 87
TfiI GAWTC 1 cut(s) 159
Tru1I TTAA 1 cut(s) 316
Tru9I TTAA 1 cut(s) 316
TscAI CASTG 1 cut(s) 171
TseFI GTSAC 1 cut(s) 289
Tsp45I GTSAC 1 cut(s) 289
TspDTI ATGAA 3 cut(s) 29, 171, 300
TspRI CASTG 1 cut(s) 171
XapI RAATTY 1 cut(s) 28
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.