RchiOBHm_Chr4g0405981

Protein FAR1-RELATED SEQUENCE 5-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0000164
Physical Location & Seq
Forward (+)
27003670 .. 27005165
1496 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ37742

Sequence Viewer

Length: 1401 bp
ATGGAGTCACAACAAAGTTTCGATGACACTGCTATCTATTGTCCTCAAGTGAAGGTTGATCTAATTCCTGTAAAGAACCAAGAATTTCATACACTAGAAGACGTTGAGACGTTTTACAAAAGCTATGCAAAAGAATCAGGGTTTGATGTCAAAAGTTTTACTAGCGAGAAGAAGAATGGTGTGATTGTAAGAAAGGCGTATGTGTGCTCTAAACAAGGAACATCAAAGGTAACAGGAAAGAAAAGAAATAGGAATCGAACAAGAGTAAATTGCAAGGCAAGAATAGTAGTTGCAAGACGTGCTACGATCGGCAAATATGTTGTCACTATTTTTGATGAGGGTCACAGCCATCCTTTAACTACCCTACGAAGAAAACATCTGACAAAGATCCATCGTGAGGTTTCATCGATTCATAAATCATTAACGAAACAACTGACTGCAGTCAATGTGCCAACATGTACACAATTTGACTTTCTTGGAGTGCATTCAGGAGGAGTAGAAAACATTGGGTGCTTGCAACAAGATATTTATAACTACAAAAGGGATTGTCGCAAAGAGGTGGAGGGGCATGATGGAGATATGTTGCATGAGTACTTCCTGTTGGAGATAGAAAAAGATCCTTCATTAATTTTCAAAATAGAGGCTGATAATGAGAACAGGATCACACATATCTTTTGGGCTGATGCAATTTCTAGACGATCTTACAAGTTTTATGGTGATGTTGTAATATTTGACACAACTTACAATACCAATATGTATTCGTTGATCTTTGCACCTTTGGTGGGAGTAAATAATCATGGGCAGACAATAATTTTGGCTTGTGCATTCTTAAGCAATGAGACAACTGATTCTTTTGTTTGGTTCTTTAAAGAATTTTTAGATGCAATGCCAGGTGATGCTCCGAGGATGATTATTACTGATCAAGATCCAGCAATGACGAAAGCTATCTCTGAAGTACTCCCACAGACATTTCACAGGTATTGTAGTTGGCATATTCTAAATAAATTCTCTGAAAAAATAGACCCAGGAAAATATACTCGTTATTATGATGAATTTCAAGATTGCATATGGAATTCAGAAAATAGAGATGAGTTTGATGCAAGGTGGACATCGATTGTTGTGAGTAGTGGTTTAAGTGACAATGGATGGTTAAAGACTATGTATGATATTCGGTCAACATGGGTGCCTGCATATGTAAATCATATCTTTTCAGCTGGGATGTCAAGTAGTCAACGAGCAGAAAGTGGGCATGCTTTCTACAAGAGGTTTGTTTCTAAAGAAAACACATTGTTAGATTTTATGCTTCAGTTTAATCGAGCTGTCACACGTCAACGACATATGGAATTAATGGAGGACAATGTTGACATCAATGAGAAGCCAAATTTTCACTCACCCTTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE SWIM

Protein Analysis

466

Amino Acids

54.03

Weight (kDa)

7.26

Isoelectric Point (pI)

49.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAR1 PF03101 37 - 120 4.1e-17 FAR1 DNA-binding domain
ZSWIM1-3_RNaseH-like PF21056 205 - 323 6.3e-12 Zinc finger SWIM domain-containing protein 1/3, RNaseH-like domain
MULE PF10551 241 - 334 7.4e-30 MULE transposase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000164)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02320 FvH4_1g21472 FvH4_2g00813 FvH4_2g02512 FvH4_2g03921 FvH4_2g23460 FvH4_3g29141 FvH4_4g05791 FvH4_4g06321 FvH4_4g15595 FvH4_4g18162 FvH4_4g18163 FvH4_4g29541 FvH4_4g29541 FvH4_4g29541 FvH4_4g29541 FvH4_4g29541 FvH4_5g31093 FvH4_6g01982 FvH4_6g21931 FvH4_6g44691 FvH4_6g48541
prunus_persica Prupe.1G074100_v2.0.a1 Prupe.3G021400_v2.0.a1
pyrus_communis pycom02g18570 pycom14g00670
rosa_chinensis RchiOBHm_Chr1g0379201 RchiOBHm_Chr1g0379361 RchiOBHm_Chr4g0405981 RchiOBHm_Chr5g0073641 RchiOBHm_Chr5g0073651 RchiOBHm_Chr7g0236661
rosa_multiflora Rmu_co8179562.1_g000001 Rmu_co8343647.1_g000001 Rmu_sc0000041.1_g000017 Rmu_sc0000114.1_g000020 Rmu_sc0000286.1_g000006 Rmu_sc0000308.1_g000038 Rmu_sc0000365.1_g000061 Rmu_sc0000365.1_g000062 Rmu_sc0000538.1_g000060 Rmu_sc0000538.1_g000061 Rmu_sc0000586.1_g000016 Rmu_sc0000898.1_g000007 Rmu_sc0000913.1_g000003 Rmu_sc0000913.1_g000004 Rmu_sc0000996.1_g000006 Rmu_sc0000996.1_g000007 Rmu_sc0000998.1_g000003 Rmu_sc0001350.1_g000009 Rmu_sc0002079.1_g000009 Rmu_sc0002200.1_g000013 Rmu_sc0002226.1_g000025 Rmu_sc0002279.1_g000014 Rmu_sc0002478.1_g000014 Rmu_sc0002717.1_g000004 Rmu_sc0002868.1_g000027 Rmu_sc0002889.1_g000043 Rmu_sc0003023.1_g000001 Rmu_sc0003110.1_g000006 Rmu_sc0003226.1_g000028 Rmu_sc0003226.1_g000029 Rmu_sc0003337.1_g000053 Rmu_sc0003558.1_g000007 Rmu_sc0004345.1_g000014 Rmu_sc0004383.1_g000007 Rmu_sc0004888.1_g000021 Rmu_sc0005114.1_g000012 Rmu_sc0005223.1_g000019 Rmu_sc0005223.1_g000020 Rmu_sc0005639.1_g000025 Rmu_sc0005685.1_g000027 Rmu_sc0005992.1_g000002 Rmu_sc0006326.1_g000034 Rmu_sc0006326.1_g000035 Rmu_sc0007390.1_g000012 Rmu_sc0007451.1_g000006 Rmu_sc0007825.1_g000003 Rmu_sc0008600.1_g000023 Rmu_sc0009291.1_g000003 Rmu_sc0012046.1_g000001 Rmu_sc0012046.1_g000002 Rmu_sc0012710.1_g000001 Rmu_sc0015238.1_g000001 Rmu_sc0016125.1_g000003 Rmu_sc0016175.1_g000001 Rmu_sc0016898.1_g000001 Rmu_sc0017323.1_g000010 Rmu_sc0017874.1_g000002 Rmu_sc0019167.1_g000001 Rmu_sc0020815.1_g000006 Rmu_sc0025564.1_g000001 Rmu_sc0026418.1_g000001 Rmu_sc0035188.1_g000002 Rmu_sc0039254.1_g000001 Rmu_ssc0000120.1_g000015 Rmu_ssc0000120.1_g000016 Rmu_ssc0000330.1_g000023 Rmu_ssc0000433.1_g000004
rosa_roxburghii Rroxscaffold_1G00047130 Rroxscaffold_1G00051320 Rroxscaffold_1G00056600 Rroxscaffold_2G00109650 Rroxscaffold_2G00119980 Rroxscaffold_3G00222550 Rroxscaffold_3G00224980 Rroxscaffold_3G00251020 Rroxscaffold_6G00411190 Rroxscaffold_7G00166520 Rroxscaffold_7G00172920 Rroxscaffold_7G00191860 Rroxscaffold_7G00194430
rosa_rugosa Rorug01G0198900 Rorug01G0217300 Rorug01G0244500 Rorug02G0147400 Rorug02G0152200 Rorug02G0595500 Rorug02G0595600 Rorug03G0060500 Rorug03G0203000 Rorug03G0285800 Rorug04G0027200 Rorug04G0027300 Rorug04G0225800 Rorug05G0073400 Rorug05G0213300 Rorug05G0324600 Rorug05G0390900 Rorug05G0391000 Rorug05G0391100 Rorug05G0391200 Rorug05G0462900 Rorug05G0473000 Rorug06G0256500 Rorug07G0199000 Rorug07G0208800 Rorug07G0208800 Rorug07G0316600 Rorug07G0316700
rosa_samantha Rh2BG532400 Rh2CG581900 Rh3CG322600 Rh6AG079900 Rh6AG250800 Rh6AG496300 Rh6BG506100 Rh6CG126000 Rh6CG511700 Rh6DG109400 Rh6DG112700 Rh7CG104500 Rh7CG322000 Rh7CG431500
rosa_wichuraiana Rw0G020410 Rw1G009190 Rw1G014580 Rw1G021000 Rw1G022190 Rw2G025900 Rw2G029920 Rw2G037530 Rw3G018560 Rw3G020560 Rw4G008500 Rw4G022520 Rw5G019030 Rw5G031180 Rw5G044830 Rw6G005010 Rw6G006890 Rw6G011330 Rw6G011380 Rw6G023900 Rw7G028490 Rw7G030170 Rw7G030370 Rw7G032030 Rw7G032040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 531
AccB1I GGYRCC 1 cut(s) 1183
AclWI GGATC 4 cut(s) 382, 611, 668, 920
AcsI RAATTY 6 cut(s) 83, 872, 1004, 1052, 1072, 1381
AcuI CTGAAG 2 cut(s) 972, 1289
AfaI GTAC 3 cut(s) 460, 593, 957
AfiI CCNNNNNNNGG 2 cut(s) 397, 782
AflII CTTAAG 1 cut(s) 829
AflIII ACRYGT 2 cut(s) 455, 1325
AgsI TTSAA 2 cut(s) 634, 1058
AjiI CACGTC 2 cut(s) 299, 1328
AjnI CCWGG 2 cut(s) 889, 1024
AluBI AGCT 4 cut(s) 123, 944, 1214, 1319
AluI AGCT 4 cut(s) 123, 944, 1214, 1319
Alw21I GWGCWC 1 cut(s) 209
Alw26I GTCTC 2 cut(s) 101, 833
AlwI GGATC 4 cut(s) 382, 611, 668, 920
ApoI RAATTY 6 cut(s) 83, 872, 1004, 1052, 1072, 1381
ArsI GACNNNNNNTTYG 4 cut(s) 306, 338, 796, 828
AseI ATTAAT 2 cut(s) 626, 1346
AsuHPI GGTGA 3 cut(s) 728, 905, 1383
BanI GGYRCC 1 cut(s) 1183
BbsI GAAGAC 1 cut(s) 105
Bbv12I GWGCWC 1 cut(s) 209
BccI CCATC 4 cut(s) 357, 399, 566, 1140
BcgI CGANNNNNNTGC 2 cut(s) 11, 45
BciT130I CCWGG 2 cut(s) 891, 1026
BclI TGATCA 1 cut(s) 919
BcoDI GTCTC 2 cut(s) 101, 833
BfaI CTAG 3 cut(s) 95, 162, 693
BfmI CTRYAG 1 cut(s) 438
BfrI CTTAAG 1 cut(s) 829
BmcAI AGTACT 2 cut(s) 593, 957
Bme1390I CCNGG 2 cut(s) 891, 1026
BmgBI CACGTC 2 cut(s) 299, 1328
BmiI GGNNCC 1 cut(s) 1185
BmrFI CCNGG 2 cut(s) 891, 1026
BmsI GCATC 4 cut(s) 673, 871, 886, 1087
BoxI GACNNNNGTC 1 cut(s) 440
BpiI GAAGAC 1 cut(s) 105
BpuEI CTTGAG 1 cut(s) 30
Bsa29I ATCGAT 2 cut(s) 407, 1112
BsaBI GATNNNNATC 1 cut(s) 924
BsaJI CCNNGG 2 cut(s) 902, 1024
Bsc4I CCNNNNNNNGG 2 cut(s) 397, 782
Bse3DI GCAATG 3 cut(s) 841, 891, 939
Bse8I GATNNNNATC 1 cut(s) 924
BseBI CCWGG 2 cut(s) 891, 1026
BseCI ATCGAT 2 cut(s) 407, 1112
BseDI CCNNGG 2 cut(s) 902, 1024
BseGI GGATG 4 cut(s) 349, 912, 1151, 1224
BseJI GATNNNNATC 1 cut(s) 924
BseLI CCNNNNNNNGG 2 cut(s) 397, 782
BseMI GCAATG 3 cut(s) 841, 891, 939
BseRI GAGGAG 1 cut(s) 507
BseYI CCCAGC 1 cut(s) 1214
Bsh1285I CGRYCG 1 cut(s) 309
BshNI GGYRCC 1 cut(s) 1183
BshVI ATCGAT 2 cut(s) 407, 1112
BsiEI CGRYCG 1 cut(s) 309
BsiHKAI GWGCWC 1 cut(s) 209
BslI CCNNNNNNNGG 2 cut(s) 397, 782
BsmAI GTCTC 2 cut(s) 101, 833
BsmBI CGTCTC 1 cut(s) 101
BsmI GAATGC 2 cut(s) 484, 824
Bsp1286I GDGCHC 1 cut(s) 209
Bsp1407I TGTACA 1 cut(s) 458
Bsp143I GATC 9 cut(s) 58, 306, 387, 616, 660, 698, 765, 919, 925
BspDI ATCGAT 2 cut(s) 407, 1112
BspLI GGNNCC 1 cut(s) 1185
BspMAI CTGCAG 1 cut(s) 442
BspPI GGATC 4 cut(s) 382, 611, 668, 920
BspT107I GGYRCC 1 cut(s) 1183
BspTI CTTAAG 1 cut(s) 829
BsrDI GCAATG 3 cut(s) 841, 891, 939
BsrGI TGTACA 1 cut(s) 458
BssECI CCNNGG 2 cut(s) 902, 1024
BssMI GATC 9 cut(s) 58, 306, 387, 616, 660, 698, 765, 919, 925
Bst2UI CCWGG 2 cut(s) 891, 1026
BstAFI CTTAAG 1 cut(s) 829
BstAPI GCANNNNNTGC 1 cut(s) 299
BstAUI TGTACA 1 cut(s) 458
BstC8I GCNNGC 3 cut(s) 515, 1188, 1251
BstF5I GGATG 4 cut(s) 349, 912, 1151, 1224
BstKTI GATC 9 cut(s) 61, 309, 390, 619, 663, 701, 768, 922, 928
BstMAI GTCTC 2 cut(s) 101, 833
BstMBI GATC 9 cut(s) 58, 306, 387, 616, 660, 698, 765, 919, 925
BstMCI CGRYCG 1 cut(s) 309
BstMWI GCNNNNNNNGC 1 cut(s) 299
BstNI CCWGG 2 cut(s) 891, 1026
BstNSI RCATGY 2 cut(s) 459, 1253
BstPAI GACNNNNGTC 1 cut(s) 440
BstSCI CCNGG 2 cut(s) 889, 1024
BstSFI CTRYAG 1 cut(s) 438
BstV2I GAAGAC 1 cut(s) 105
BstX2I RGATCY 3 cut(s) 387, 616, 925
BstYI RGATCY 3 cut(s) 387, 616, 925
Bsu15I ATCGAT 2 cut(s) 407, 1112
BsuTUI ATCGAT 2 cut(s) 407, 1112
BtrI CACGTC 2 cut(s) 299, 1328
BtsCI GGATG 4 cut(s) 349, 912, 1151, 1224
BtsI GCAGTG 1 cut(s) 27
BtsIMutI CAGTG 1 cut(s) 27
Cac8I GCNNGC 3 cut(s) 515, 1188, 1251
ClaI ATCGAT 2 cut(s) 407, 1112
Csp6I GTAC 3 cut(s) 459, 592, 956
CviAII CATG 6 cut(s) 456, 569, 587, 797, 1179, 1250
CviJI RGCY 9 cut(s) 123, 348, 644, 680, 818, 944, 1214, 1319, 1378
CviKI_1 RGCY 9 cut(s) 123, 348, 644, 680, 818, 944, 1214, 1319, 1378
CviQI GTAC 3 cut(s) 459, 592, 956
DpnI GATC 9 cut(s) 60, 308, 389, 618, 662, 700, 767, 921, 927
DpnII GATC 9 cut(s) 58, 306, 387, 616, 660, 698, 765, 919, 925
DraI TTTAAA 1 cut(s) 868
Eco57I CTGAAG 2 cut(s) 972, 1289
EcoRI GAATTC 1 cut(s) 1072
EcoRII CCWGG 2 cut(s) 889, 1024
Esp3I CGTCTC 1 cut(s) 101
FaeI CATG 6 cut(s) 459, 572, 590, 800, 1182, 1253
FatI CATG 6 cut(s) 455, 568, 586, 796, 1178, 1249
FauNDI CATATG 3 cut(s) 1067, 1192, 1338
FbaI TGATCA 1 cut(s) 919
FokI GGATG 4 cut(s) 336, 919, 1158, 1231
FspBI CTAG 3 cut(s) 95, 162, 693
GsaI CCCAGC 1 cut(s) 1218
Hin1II CATG 6 cut(s) 459, 572, 590, 800, 1182, 1253
HincII GTYRAC 4 cut(s) 1176, 1232, 1331, 1363
HindII GTYRAC 4 cut(s) 1176, 1232, 1331, 1363
HinfI GANTC 5 cut(s) 5, 134, 253, 409, 848
HphI GGTGA 3 cut(s) 728, 905, 1383
Hpy166II GTNNAC 6 cut(s) 461, 1107, 1176, 1232, 1331, 1363
Hpy188I TCNGA 5 cut(s) 381, 903, 952, 1012, 1078
Hpy188III TCNNGA 5 cut(s) 395, 489, 693, 923, 1058
Hpy8I GTNNAC 6 cut(s) 461, 1107, 1176, 1232, 1331, 1363
HpyAV CCTTC 2 cut(s) 46, 630
HpyCH4IV ACGT 4 cut(s) 102, 110, 298, 1327
HpyF10VI GCNNNNNNNGC 1 cut(s) 299
HpySE526I ACGT 4 cut(s) 102, 110, 298, 1327
Hsp92II CATG 6 cut(s) 459, 572, 590, 800, 1182, 1253
Ksp22I TGATCA 1 cut(s) 919
Kzo9I GATC 9 cut(s) 58, 306, 387, 616, 660, 698, 765, 919, 925
LmnI GCTCC 1 cut(s) 904
LweI GCATC 4 cut(s) 673, 871, 886, 1087
MaeI CTAG 3 cut(s) 95, 162, 693
MaeII ACGT 4 cut(s) 102, 110, 298, 1327
MaeIII GTNAC 6 cut(s) 6, 229, 322, 341, 1136, 1321
MalI GATC 9 cut(s) 60, 308, 389, 618, 662, 700, 767, 921, 927
MboI GATC 9 cut(s) 58, 306, 387, 616, 660, 698, 765, 919, 925
MboII GAAGA 4 cut(s) 110, 181, 184, 381
MflI RGATCY 3 cut(s) 387, 616, 925
MhlI GDGCHC 1 cut(s) 209
MlyI GAGTC 1 cut(s) 14
MmeI TCCRAC 1 cut(s) 582
MseI TTAA 9 cut(s) 356, 422, 626, 830, 867, 1133, 1151, 1311, 1346
MspA1I CMGCKG 1 cut(s) 1214
MspCI CTTAAG 1 cut(s) 829
MspR9I CCNGG 2 cut(s) 891, 1026
Mva1269I GAATGC 2 cut(s) 484, 824
MvaI CCWGG 2 cut(s) 891, 1026
MwoI GCNNNNNNNGC 1 cut(s) 299
NdeI CATATG 3 cut(s) 1067, 1192, 1338
NdeII GATC 9 cut(s) 58, 306, 387, 616, 660, 698, 765, 919, 925
NlaIII CATG 6 cut(s) 459, 572, 590, 800, 1182, 1253
NlaIV GGNNCC 1 cut(s) 1185
NmuCI GTSAC 5 cut(s) 6, 322, 341, 1136, 1321
NspI RCATGY 2 cut(s) 459, 1253
PaeI GCATGC 1 cut(s) 1253
PciI ACATGT 1 cut(s) 455
PctI GAATGC 2 cut(s) 484, 824
PfeI GAWTC 4 cut(s) 134, 253, 409, 848
Ple19I CGATCG 1 cut(s) 309
PleI GAGTC 1 cut(s) 13
PpsI GAGTC 1 cut(s) 13
PscI ACATGT 1 cut(s) 455
PshAI GACNNNNGTC 1 cut(s) 440
PshBI ATTAAT 2 cut(s) 626, 1346
PsiI TTATAA 1 cut(s) 531
Psp6I CCWGG 2 cut(s) 889, 1024
PspFI CCCAGC 1 cut(s) 1214
PspGI CCWGG 2 cut(s) 889, 1024
PspN4I GGNNCC 1 cut(s) 1185
PstI CTGCAG 1 cut(s) 442
PsuI RGATCY 3 cut(s) 387, 616, 925
PvuI CGATCG 1 cut(s) 309
PvuII CAGCTG 1 cut(s) 1214
RsaI GTAC 3 cut(s) 460, 593, 957
RsaNI GTAC 3 cut(s) 459, 592, 956
SaqAI TTAA 9 cut(s) 356, 422, 626, 830, 867, 1133, 1151, 1311, 1346
Sau3AI GATC 9 cut(s) 58, 306, 387, 616, 660, 698, 765, 919, 925
ScaI AGTACT 2 cut(s) 593, 957
SchI GAGTC 1 cut(s) 14
ScrFI CCNGG 2 cut(s) 891, 1026
SduI GDGCHC 1 cut(s) 209
SfaNI GCATC 4 cut(s) 673, 871, 886, 1087
SfcI CTRYAG 1 cut(s) 438
SmlI CTYRAG 2 cut(s) 45, 829
SmoI CTYRAG 2 cut(s) 45, 829
SphI GCATGC 1 cut(s) 1253
SspI AATATT 1 cut(s) 729
SspMI CTAG 3 cut(s) 95, 162, 693
StyD4I CCNGG 2 cut(s) 889, 1024
TaiI ACGT 4 cut(s) 105, 113, 301, 1330
TaqI TCGA 5 cut(s) 21, 256, 407, 1112, 1315
TaqII GACCGA 1 cut(s) 1161
TatI WGTACW 3 cut(s) 458, 591, 955
TfiI GAWTC 4 cut(s) 134, 253, 409, 848
Tru1I TTAA 9 cut(s) 356, 422, 626, 830, 867, 1133, 1151, 1311, 1346
Tru9I TTAA 9 cut(s) 356, 422, 626, 830, 867, 1133, 1151, 1311, 1346
TscAI CASTG 1 cut(s) 34
TseFI GTSAC 5 cut(s) 6, 322, 341, 1136, 1321
Tsp45I GTSAC 5 cut(s) 6, 322, 341, 1136, 1321
TspDTI ATGAA 5 cut(s) 77, 393, 401, 612, 1065
TspRI CASTG 1 cut(s) 34
Vha464I CTTAAG 1 cut(s) 829
VspI ATTAAT 2 cut(s) 626, 1346
XapI RAATTY 6 cut(s) 83, 872, 1004, 1052, 1072, 1381
XbaI TCTAGA 1 cut(s) 692
XceI RCATGY 2 cut(s) 459, 1253
XspI CTAG 3 cut(s) 95, 162, 693
ZrmI AGTACT 2 cut(s) 593, 957
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.