Rmu_sc0000996.1_g000007

Protein FAR1-RELATED SEQUENCE 5-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000996.1
OG0000164
Physical Location & Seq
Forward (+)
17320 .. 18930
1611 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000996.1_g000007.1.cds

Sequence Viewer

Length: 1611 bp
atggaaaagctaagtagtgttaatgttcgaacaagtcagcaattcaaaataatggagactgtggcaggtggtatacaaaatgttgggtgcattgtcagagatttgagaaactttgaaagagattcaagggaagaagtgaagggacatgatgcaactatgctacttgagtacttagagtcagaaaaggaaaagaagtcctccttttgttttgaagttgatagagatgaagaaaataggttgaatcgttgcttttgggctgatcccacctcaagaaaagcatattattattttaacgatgttgttgtgtttgataccacgtacaacacaaacaaatatcgcatgatctttgctccaatcataggcgtcaaccatcatggccaaacaattgtatttggttgtggacttttaagtgatgagaaaacagagtcttttatttggttactggaacaatggctgaaagctatgcctagtggtccaccgaaagttataattactgatcaagatccagcaattgcaaaagccatcgctcaagttcttccacttacactccaccgtttttgtctttggcatatcatgtttaaatttcgagataagcttggtcctgtgattgctcaaagttattatggactcttcaaagccagtgtatataactccaagactacagaagaatttgaagctagttggaagaatgatgtgcaacaaagtagtcaagaaaatcatgcgtggttgaacacaatgtatgaactacgaagtaaatgggtccctgcattttgcaatcacatctttcatgcaggtatgcaaagcagtcaaagagttgaaagtaaccactcattcttcaaatcatttgtttcagtgaacaattctttattggattttgctacaaggattaaaaggggacttagacaacaaaggcatgaagaactgattcgtgatcatgttgatagtaatgaaattccaaagacaaggacttactatcccatagaaaagcaactgcgtgaggtgtacacaaaagaaatattcttgaacttacaaaatgaggttgtcaagagtactgcctacttgaaatgtgaaattttgaaggaggatgaaaatgaatgcgtgtatactgttttaagggctgcagatgatgaacaaagctggaaattaagacaaattgttcatgacaaagtatctggttttgcaaagtgtagttgtggaggctttgaggttgaaggaattgtatgtaggcatatcattttcttttttcgaagtatgaatatggtacatttgccaagtgaatacatcttggataggtggacaaaaaatgcaaaagctggaagagtttgggatgatgatggtgttgaagtgaaagatgtgggtgataagtcattgatgatgagatatattcaattatctcaactttcacaagctgtaattgataaggcatctctttcaccagaaacaacaaaatatttcacagatgggctccattcgcttcgccttggtattaaagaacttctctcaagtttgggtgttgaggaacttccatccacaaaaaaaaaagaatacctcagcaaatactcattgaagaaccatctcaatcaaaggctaaaggaagtgggaagaggttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE SWIM

Protein Analysis

536

Amino Acids

62.27

Weight (kDa)

7.91

Isoelectric Point (pI)

40.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000164)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02320 FvH4_1g21472 FvH4_2g00813 FvH4_2g02512 FvH4_2g03921 FvH4_2g23460 FvH4_3g29141 FvH4_4g05791 FvH4_4g06321 FvH4_4g15595 FvH4_4g18162 FvH4_4g18163 FvH4_4g29541 FvH4_4g29541 FvH4_4g29541 FvH4_4g29541 FvH4_4g29541 FvH4_5g31093 FvH4_6g01982 FvH4_6g21931 FvH4_6g44691 FvH4_6g48541
prunus_persica Prupe.1G074100_v2.0.a1 Prupe.3G021400_v2.0.a1
pyrus_communis pycom02g18570 pycom14g00670
rosa_chinensis RchiOBHm_Chr1g0379201 RchiOBHm_Chr1g0379361 RchiOBHm_Chr4g0405981 RchiOBHm_Chr5g0073641 RchiOBHm_Chr5g0073651 RchiOBHm_Chr7g0236661
rosa_multiflora Rmu_co8179562.1_g000001 Rmu_co8343647.1_g000001 Rmu_sc0000041.1_g000017 Rmu_sc0000114.1_g000020 Rmu_sc0000286.1_g000006 Rmu_sc0000308.1_g000038 Rmu_sc0000365.1_g000061 Rmu_sc0000365.1_g000062 Rmu_sc0000538.1_g000060 Rmu_sc0000538.1_g000061 Rmu_sc0000586.1_g000016 Rmu_sc0000898.1_g000007 Rmu_sc0000913.1_g000003 Rmu_sc0000913.1_g000004 Rmu_sc0000996.1_g000006 Rmu_sc0000996.1_g000007 Rmu_sc0000998.1_g000003 Rmu_sc0001350.1_g000009 Rmu_sc0002079.1_g000009 Rmu_sc0002200.1_g000013 Rmu_sc0002226.1_g000025 Rmu_sc0002279.1_g000014 Rmu_sc0002478.1_g000014 Rmu_sc0002717.1_g000004 Rmu_sc0002868.1_g000027 Rmu_sc0002889.1_g000043 Rmu_sc0003023.1_g000001 Rmu_sc0003110.1_g000006 Rmu_sc0003226.1_g000028 Rmu_sc0003226.1_g000029 Rmu_sc0003337.1_g000053 Rmu_sc0003558.1_g000007 Rmu_sc0004345.1_g000014 Rmu_sc0004383.1_g000007 Rmu_sc0004888.1_g000021 Rmu_sc0005114.1_g000012 Rmu_sc0005223.1_g000019 Rmu_sc0005223.1_g000020 Rmu_sc0005639.1_g000025 Rmu_sc0005685.1_g000027 Rmu_sc0005992.1_g000002 Rmu_sc0006326.1_g000034 Rmu_sc0006326.1_g000035 Rmu_sc0007390.1_g000012 Rmu_sc0007451.1_g000006 Rmu_sc0007825.1_g000003 Rmu_sc0008600.1_g000023 Rmu_sc0009291.1_g000003 Rmu_sc0012046.1_g000001 Rmu_sc0012046.1_g000002 Rmu_sc0012710.1_g000001 Rmu_sc0015238.1_g000001 Rmu_sc0016125.1_g000003 Rmu_sc0016175.1_g000001 Rmu_sc0016898.1_g000001 Rmu_sc0017323.1_g000010 Rmu_sc0017874.1_g000002 Rmu_sc0019167.1_g000001 Rmu_sc0020815.1_g000006 Rmu_sc0025564.1_g000001 Rmu_sc0026418.1_g000001 Rmu_sc0035188.1_g000002 Rmu_sc0039254.1_g000001 Rmu_ssc0000120.1_g000015 Rmu_ssc0000120.1_g000016 Rmu_ssc0000330.1_g000023 Rmu_ssc0000433.1_g000004
rosa_roxburghii Rroxscaffold_1G00047130 Rroxscaffold_1G00051320 Rroxscaffold_1G00056600 Rroxscaffold_2G00109650 Rroxscaffold_2G00119980 Rroxscaffold_3G00222550 Rroxscaffold_3G00224980 Rroxscaffold_3G00251020 Rroxscaffold_6G00411190 Rroxscaffold_7G00166520 Rroxscaffold_7G00172920 Rroxscaffold_7G00191860 Rroxscaffold_7G00194430
rosa_rugosa Rorug01G0198900 Rorug01G0217300 Rorug01G0244500 Rorug02G0147400 Rorug02G0152200 Rorug02G0595500 Rorug02G0595600 Rorug03G0060500 Rorug03G0203000 Rorug03G0285800 Rorug04G0027200 Rorug04G0027300 Rorug04G0225800 Rorug05G0073400 Rorug05G0213300 Rorug05G0324600 Rorug05G0390900 Rorug05G0391000 Rorug05G0391100 Rorug05G0391200 Rorug05G0462900 Rorug05G0473000 Rorug06G0256500 Rorug07G0199000 Rorug07G0208800 Rorug07G0208800 Rorug07G0316600 Rorug07G0316700
rosa_samantha Rh2BG532400 Rh2CG581900 Rh3CG322600 Rh6AG079900 Rh6AG250800 Rh6AG496300 Rh6BG506100 Rh6CG126000 Rh6CG511700 Rh6DG109400 Rh6DG112700 Rh7CG104500 Rh7CG322000 Rh7CG431500
rosa_wichuraiana Rw0G020410 Rw1G009190 Rw1G014580 Rw1G021000 Rw1G022190 Rw2G025900 Rw2G029920 Rw2G037530 Rw3G018560 Rw3G020560 Rw4G008500 Rw4G022520 Rw5G019030 Rw5G031180 Rw5G044830 Rw6G005010 Rw6G006890 Rw6G011330 Rw6G011380 Rw6G023900 Rw7G028490 Rw7G030170 Rw7G030370 Rw7G032030 Rw7G032040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 488
AarI CACCTGC 1 cut(s) 56
Acc36I ACCTGC 2 cut(s) 56, 782
AccI GTMKAC 2 cut(s) 73, 1103
AclWI GGATC 2 cut(s) 254, 497
AcoI YGGCCR 1 cut(s) 376
AcsI RAATTY 4 cut(s) 581, 668, 951, 1071
AcyI GRCGYC 1 cut(s) 363
AfaI GTAC 5 cut(s) 170, 320, 1004, 1051, 1263
AfiI CCNNNNNNNGG 1 cut(s) 359
AluBI AGCT 7 cut(s) 10, 461, 595, 677, 1137, 1313, 1409
AluI AGCT 7 cut(s) 10, 461, 595, 677, 1137, 1313, 1409
Alw26I GTCTC 1 cut(s) 50
AlwI GGATC 2 cut(s) 254, 497
AoxI GGCC 1 cut(s) 376
ApeKI GCWGC 1 cut(s) 1118
ApoI RAATTY 4 cut(s) 581, 668, 951, 1071
Asp700I GAANNNNTTC 1 cut(s) 924
AspS9I GGNCC 3 cut(s) 473, 599, 760
AsuHPI GGTGA 2 cut(s) 1370, 1425
AsuII TTCGAA 2 cut(s) 28, 1246
AvaII GGWCC 3 cut(s) 473, 599, 760
BalI TGGCCA 1 cut(s) 378
BanII GRGCYC 1 cut(s) 1467
BbvCI CCTCAGC 1 cut(s) 1550
BbvI GCAGC 1 cut(s) 1105
BccI CCATC 6 cut(s) 378, 530, 1328, 1454, 1534, 1581
BclI TGATCA 2 cut(s) 496, 931
BcoDI GTCTC 1 cut(s) 50
BfaI CTAG 2 cut(s) 468, 678
BfmI CTRYAG 2 cut(s) 660, 1119
BfuAI ACCTGC 2 cut(s) 56, 782
BisI GCNGC 1 cut(s) 1119
BlsI GCNGC 1 cut(s) 1120
BmcAI AGTACT 2 cut(s) 170, 1051
Bme18I GGWCC 3 cut(s) 473, 599, 760
BmgT120I GGNCC 3 cut(s) 473, 599, 760
BmiI GGNNCC 3 cut(s) 761, 762, 1466
BmsI GCATC 2 cut(s) 139, 1433
Bpu10I CCTNAGC 1 cut(s) 1550
Bpu14I TTCGAA 2 cut(s) 28, 1246
BpuEI CTTGAG 4 cut(s) 185, 253, 513, 1486
BsaAI YACGTR 1 cut(s) 318
BsaBI GATNNNNATC 1 cut(s) 501
BsaHI GRCGYC 1 cut(s) 363
BsaJI CCNNGG 1 cut(s) 1480
BsaXI ACNNNNNCTCC 2 cut(s) 531, 561
Bsc4I CCNNNNNNNGG 1 cut(s) 359
Bse1I ACTGG 2 cut(s) 447, 639
Bse8I GATNNNNATC 1 cut(s) 501
BseDI CCNNGG 1 cut(s) 1480
BseGI GGATG 3 cut(s) 1090, 1333, 1526
BseJI GATNNNNATC 1 cut(s) 501
BseLI CCNNNNNNNGG 1 cut(s) 359
BseMII CTCAG 1 cut(s) 1564
BseNI ACTGG 2 cut(s) 447, 639
BseXI GCAGC 1 cut(s) 1105
BshFI GGCC 1 cut(s) 378
BslFI GGGAC 3 cut(s) 156, 746, 909
BslI CCNNNNNNNGG 1 cut(s) 359
BsmAI GTCTC 1 cut(s) 50
BsmFI GGGAC 3 cut(s) 156, 746, 909
BsmI GAATGC 1 cut(s) 1100
BsnI GGCC 1 cut(s) 378
Bsp119I TTCGAA 2 cut(s) 28, 1246
Bsp1286I GDGCHC 1 cut(s) 1467
Bsp1407I TGTACA 1 cut(s) 1002
Bsp143I GATC 5 cut(s) 259, 342, 496, 502, 931
BspANI GGCC 1 cut(s) 378
BspCNI CTCAG 1 cut(s) 1563
BspHI TCATGA 1 cut(s) 1159
BspLI GGNNCC 3 cut(s) 761, 762, 1466
BspMAI CTGCAG 1 cut(s) 1123
BspMI ACCTGC 2 cut(s) 56, 782
BspPI GGATC 2 cut(s) 254, 497
BspT104I TTCGAA 2 cut(s) 28, 1246
BsrGI TGTACA 1 cut(s) 1002
BsrI ACTGG 2 cut(s) 447, 639
BssECI CCNNGG 1 cut(s) 1480
BssMI GATC 5 cut(s) 259, 342, 496, 502, 931
BssNAI GTATAC 2 cut(s) 74, 1104
BssNI GRCGYC 1 cut(s) 363
BssT1I CCWWGG 1 cut(s) 1480
Bst1107I GTATAC 2 cut(s) 74, 1104
Bst4CI ACNGT 3 cut(s) 61, 554, 1108
Bst6I CTCTTC 3 cut(s) 635, 1312, 1597
BstACI GRCGYC 1 cut(s) 363
BstAUI TGTACA 1 cut(s) 1002
BstBAI YACGTR 1 cut(s) 318
BstBI TTCGAA 2 cut(s) 28, 1246
BstDEI CTNAG 4 cut(s) 11, 172, 899, 1550
BstF5I GGATG 3 cut(s) 1090, 1333, 1526
BstKTI GATC 5 cut(s) 262, 345, 499, 505, 934
BstMAI GTCTC 1 cut(s) 50
BstMBI GATC 5 cut(s) 259, 342, 496, 502, 931
BstMWI GCNNNNNNNGC 1 cut(s) 1471
BstSFI CTRYAG 2 cut(s) 660, 1119
BstV1I GCAGC 1 cut(s) 1105
BstX2I RGATCY 1 cut(s) 502
BstYI RGATCY 1 cut(s) 502
BstZ17I GTATAC 2 cut(s) 74, 1104
BsuRI GGCC 1 cut(s) 378
BtgZI GCGATG 1 cut(s) 508
BtsCI GGATG 3 cut(s) 1090, 1333, 1526
BtsIMutI CAGTG 2 cut(s) 646, 858
BveI ACCTGC 2 cut(s) 56, 782
CciI TCATGA 1 cut(s) 1159
Cfr13I GGNCC 3 cut(s) 473, 599, 760
CseI GACGC 1 cut(s) 352
Csp6I GTAC 5 cut(s) 169, 319, 1003, 1050, 1262
CspCI CAANNNNNGTGG 2 cut(s) 539, 574
CviAII CATG 9 cut(s) 146, 340, 374, 574, 719, 788, 914, 935, 1160
CviQI GTAC 5 cut(s) 169, 319, 1003, 1050, 1262
DdeI CTNAG 4 cut(s) 11, 172, 899, 1550
DpnI GATC 5 cut(s) 261, 344, 498, 504, 933
DpnII GATC 5 cut(s) 259, 342, 496, 502, 931
DraI TTTAAA 1 cut(s) 580
EaeI YGGCCR 1 cut(s) 376
Eam1104I CTCTTC 3 cut(s) 635, 1312, 1597
EarI CTCTTC 3 cut(s) 635, 1312, 1597
Eco130I CCWWGG 1 cut(s) 1480
Eco24I GRGCYC 1 cut(s) 1467
Eco47I GGWCC 3 cut(s) 473, 599, 760
EcoO109I RGGNCCY 1 cut(s) 760
EcoT14I CCWWGG 1 cut(s) 1480
EcoT38I GRGCYC 1 cut(s) 1467
ErhI CCWWGG 1 cut(s) 1480
FaeI CATG 9 cut(s) 149, 343, 377, 577, 722, 791, 917, 938, 1163
FalI AAGNNNNNCTT 2 cut(s) 185, 217
FaqI GGGAC 3 cut(s) 156, 746, 909
FatI CATG 9 cut(s) 145, 339, 373, 573, 718, 787, 913, 934, 1159
FbaI TGATCA 2 cut(s) 496, 931
FblI GTMKAC 2 cut(s) 73, 1103
Fnu4HI GCNGC 1 cut(s) 1119
FokI GGATG 3 cut(s) 1097, 1340, 1513
FriOI GRGCYC 1 cut(s) 1467
Fsp4HI GCNGC 1 cut(s) 1119
FspBI CTAG 2 cut(s) 468, 678
GluI GCNGC 1 cut(s) 1119
HaeIII GGCC 1 cut(s) 378
HgaI GACGC 1 cut(s) 352
Hin1I GRCGYC 1 cut(s) 363
Hin1II CATG 9 cut(s) 149, 343, 377, 577, 722, 791, 917, 938, 1163
HincII GTYRAC 1 cut(s) 367
HindII GTYRAC 1 cut(s) 367
HindIII AAGCTT 1 cut(s) 593
HinfI GANTC 6 cut(s) 122, 176, 241, 425, 627, 925
HphI GGTGA 2 cut(s) 1370, 1425
Hpy166II GTNNAC 9 cut(s) 74, 367, 401, 476, 856, 1003, 1005, 1104, 1296
Hpy188I TCNGA 2 cut(s) 98, 181
Hpy188III TCNNGA 8 cut(s) 270, 500, 587, 710, 929, 1021, 1045, 1160
Hpy8I GTNNAC 9 cut(s) 74, 367, 401, 476, 856, 1003, 1005, 1104, 1296
HpyAV CCTTC 3 cut(s) 133, 1072, 1205
HpyCH4III ACNGT 3 cut(s) 61, 554, 1108
HpyCH4IV ACGT 1 cut(s) 317
HpyF10VI GCNNNNNNNGC 1 cut(s) 1471
HpyF3I CTNAG 4 cut(s) 11, 172, 899, 1550
HpySE526I ACGT 1 cut(s) 317
Hsp92I GRCGYC 1 cut(s) 363
Hsp92II CATG 9 cut(s) 149, 343, 377, 577, 722, 791, 917, 938, 1163
KflI GGGWCCC 1 cut(s) 760
Ksp22I TGATCA 2 cut(s) 496, 931
Kzo9I GATC 5 cut(s) 259, 342, 496, 502, 931
LmnI GCTCC 2 cut(s) 355, 1470
Lsp1109I GCAGC 1 cut(s) 1105
LweI GCATC 2 cut(s) 139, 1433
MaeI CTAG 2 cut(s) 468, 678
MaeII ACGT 1 cut(s) 317
MaeIII GTNAC 2 cut(s) 438, 821
MalI GATC 5 cut(s) 261, 344, 498, 504, 933
MboI GATC 5 cut(s) 259, 342, 496, 502, 931
MfeI CAATTG 2 cut(s) 384, 510
MflI RGATCY 1 cut(s) 502
MhlI GDGCHC 1 cut(s) 1467
MlsI TGGCCA 1 cut(s) 378
MluNI TGGCCA 1 cut(s) 378
MlyI GAGTC 3 cut(s) 185, 434, 621
MmeI TCCRAC 1 cut(s) 662
Mox20I TGGCCA 1 cut(s) 378
MroXI GAANNNNTTC 1 cut(s) 924
MscI TGGCCA 1 cut(s) 378
MseI TTAA 8 cut(s) 21, 291, 407, 579, 888, 1112, 1145, 1488
Msp20I TGGCCA 1 cut(s) 378
MunI CAATTG 2 cut(s) 384, 510
Mva1269I GAATGC 1 cut(s) 1100
MwoI GCNNNNNNNGC 1 cut(s) 1471
NdeII GATC 5 cut(s) 259, 342, 496, 502, 931
NlaIII CATG 9 cut(s) 149, 343, 377, 577, 722, 791, 917, 938, 1163
NlaIV GGNNCC 3 cut(s) 761, 762, 1466
NspV TTCGAA 2 cut(s) 28, 1246
PagI TCATGA 1 cut(s) 1159
PaqCI CACCTGC 1 cut(s) 56
PctI GAATGC 1 cut(s) 1100
PdmI GAANNNNTTC 1 cut(s) 924
PfeI GAWTC 3 cut(s) 122, 241, 925
PkrI GCNGC 1 cut(s) 1120
PleI GAGTC 3 cut(s) 184, 433, 621
PpsI GAGTC 3 cut(s) 184, 433, 621
Ppu21I YACGTR 1 cut(s) 318
PpuMI RGGWCCY 1 cut(s) 760
PsiI TTATAA 1 cut(s) 488
Psp5II RGGWCCY 1 cut(s) 760
PspN4I GGNNCC 3 cut(s) 761, 762, 1466
PspPI GGNCC 3 cut(s) 473, 599, 760
PspPPI RGGWCCY 1 cut(s) 760
PstI CTGCAG 1 cut(s) 1123
PsuI RGATCY 1 cut(s) 502
RsaI GTAC 5 cut(s) 170, 320, 1004, 1051, 1263
RsaNI GTAC 5 cut(s) 169, 319, 1003, 1050, 1262
SaqAI TTAA 8 cut(s) 21, 291, 407, 579, 888, 1112, 1145, 1488
SatI GCNGC 1 cut(s) 1119
Sau3AI GATC 5 cut(s) 259, 342, 496, 502, 931
Sau96I GGNCC 3 cut(s) 473, 599, 760
ScaI AGTACT 2 cut(s) 170, 1051
SchI GAGTC 3 cut(s) 185, 434, 621
SduI GDGCHC 1 cut(s) 1467
SfaNI GCATC 2 cut(s) 139, 1433
SfcI CTRYAG 2 cut(s) 660, 1119
SfuI TTCGAA 2 cut(s) 28, 1246
SinI GGWCC 3 cut(s) 473, 599, 760
SmlI CTYRAG 4 cut(s) 164, 268, 528, 1501
SmoI CTYRAG 4 cut(s) 164, 268, 528, 1501
SspI AATATT 2 cut(s) 1017, 1451
SspMI CTAG 2 cut(s) 468, 678
StyI CCWWGG 1 cut(s) 1480
TaaI ACNGT 3 cut(s) 61, 554, 1108
TaiI ACGT 1 cut(s) 320
TaqI TCGA 3 cut(s) 28, 586, 1246
TatI WGTACW 3 cut(s) 168, 1002, 1049
TfiI GAWTC 3 cut(s) 122, 241, 925
Tru1I TTAA 8 cut(s) 21, 291, 407, 579, 888, 1112, 1145, 1488
Tru9I TTAA 8 cut(s) 21, 291, 407, 579, 888, 1112, 1145, 1488
TscAI CASTG 2 cut(s) 646, 858
TseI GCWGC 1 cut(s) 1118
TspRI CASTG 2 cut(s) 646, 858
VpaK11BI GGWCC 3 cut(s) 473, 599, 760
XapI RAATTY 4 cut(s) 581, 668, 951, 1071
XmiI GTMKAC 2 cut(s) 73, 1103
XmnI GAANNNNTTC 1 cut(s) 924
XspI CTAG 2 cut(s) 468, 678
ZrmI AGTACT 2 cut(s) 170, 1051
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.