Rorug06G0256500

Protein FAR1-RELATED SEQUENCE 5-like

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
Physical Location & Seq
Forward (+)
40256221 .. 40336091
79871 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0256500.1

Sequence Viewer

Length: 3738 bp
ATGGCTCTTGTAAGATCAGCTCATCCAGAAGCCTCCTCTTCCTCAAATGCTTCTCCTTCAGTATCTAGTCATGATGTGTTCTTGAGTTTCCGAGGTGAAGACACTCGGAAGACTTTCACTGACCACCTCTATACAGCCTTTATGAATGCAGGCTTTCGTACGTTTCGAGATGACAATGATCTTCAAAGAGGTGAAAATATTAAGCCGGAACTGGAGAAAGCCATCGAGCAGTCCCGAAGTTCTGTGATTGTGTTCTCCAAAGACTATGCATCTTCTGGTTGGTGCCTTGACGAGCTTTTGATGATCATGAAACGGAGGAGGACAGCTGATCACATAGTTTTACCCGTCTTCTATGATGTCGATCCATCCCATGTGAGGAAGCAAACAGGAAGTCTTGCGAAAGCATTTGCTAGACACGAAAAAAATCAATCCTTGAAGGACAAGGTGAAGCGATGGAGGGAAGCACTTACAGAAGCTGCAGATCTATCAGGAATGGTCTTGCAAAATGAAGCTGACGGGCATGAGTCAAAGTTCATAAAGAAAGTTGTCAAAGTAATTGAAGATAGACTGAGGCGCACGCCCTTAAGTGTTGACAGACACTTGGTTGGAATCAAGTCTCAAGTTGAAGAGATCAACTTGTGGTTAGAAGATGGATCAACTGATAATTTCATACTTCTAATCTATGGAATGCGAGGAATAGGGAAGTCAACCATAGCAAAATTTGTTTATAATCTGAACCGTCACAGATTTGAGAGATGCAGTTTCCTTGAAGATATCAGAGAATTTTCAAAACGATCTAATGGCTTGGTTGATTTACAGAAGCAACTTCTTTATGATATTCTGGGTGGAAAGAAAGTCAAAATACAGGGTATTAGTGAGGGGATAGCTAAGATTGAAGTTGCTGTTAGCTCTAGAAGGGTTTTTCTTGTTCTCGATGATGTGGATCATGTGGACCACTTAGATGCATTACTTAGAATGCAAAACCGGTTCTATCCAGGAAGTAAAATTATCATAACAACTAGCTGTGCAGGACTGGTAGAAGCTCATCGACAATTTGTTAAGGTGCATGAAGTTAATACTTTGGGGTTCTATGAATCTTTGGAACTCTTTAGTTGGCATGCTTTTGGACAGAGCCATCCCATTGAAAGTTACATGGATCTTTCCCAAAGGATAGTTGATCACTGTGGACAACTTCCACTGGCTCTTAAAGTTTTAGGTTCTTCTTTATCAGGGAAGAGATTAGGTTTTTGGAAAAGTTATGTAAATAAATTGGAAGTAATTCCACATGGTGATATCTTGAAGACTCTCAAAATAAGCTATGAATCCTTACAAGATGATCATGACAGAAACTTATTCCTTCATATTGCATGCTTTTTCATCGGAATGGAGAAAGATGTCATTGTTACAATTTTAGATGACTCTGATATCTTCCCGGAAGTTGGCATTCAAAATCTCATTGATAGATGTTTGGTAACAATTGAATACAACAAGGTGCAAATGCATAACTTGATTCGCGACATGGGAAGAGAAATTGCTCGTCTAGAATCAAAGGAGCCAAGAAAACGCAGAAGATTATGGCATCATAAGGATTCTATCAAAGTTCTGACAGAAAATAATGGTACCAAAGCAATTGAAGGTATTGTTGTCAGTATGCAACTGCACCCTACATATACTTCCCCTTCAAGAAATGCAAGTAAGGTAGTCAGGGAAACCAATGCATTTACAAGGATGCACAATCTAAGATTCCTCCAGCTTAGTCATATACAACTCAGTGGATGCTATGAAGAATTTCCTGCAGGATTAAGATGGCTGTGCTGGATTAAATATCCTTTAGCTTCTTTACCCAATGAATTCCCATTAGAGAGCGTTGTTGCTCTTGAAATGTGTTACAGTAATTTGAGACAAGTTTGGAGGGGAACAAAGTATATCCCTTCGCTAAAGATCCTAAATCTCAGCCACTCTCATGACTTAACTGAAACCCCTGACTTTTCGTCTATTCCTAATCTTGAGAGATTGAATCTTAGAGACTGTGTAAGCTTGATTGATGTCCATGAGTCTATTGGAAGCCTAGAGAGACTTGTTTATTTGAATGTAGAAGATTGCATAAGTATTAGGAAGCTTCCCAAGAACATTTCTTTGCTACTGGAAGTACTTATCATTTCTGGTTGTTCAAGTCTTGATGAGTTTCCAGTGGACGTGAGGAAGATGGAATCTCTCAAAGTATTTCAGGCAGATGGAGTTCCAATACATCAGTTACTAGTCACTACCACCAGGGAGGTCGAACTGTGCTCAAGTCCGATTCAAGAACTTTCTTGGGCTTCTTATCTTCCACGGAATTTAGTATACTTGAGTCTAAGAAACTGCAATCTTTTGGATGATGACTTTCCTAGAGATGTTGCTAATCTATTGTCATTGCAAAAATTGGATCTCAGCGGGAACCCTATTTCTAGGCTACCGGATTGCATAAGAGGTGTTACTGGCCTCCGAGACCTCTGTTTGAGCAATTGTACAAAGCTCAAATCACTTCTAAGGCTACCAGCAGTGATCAAGTTATTCTCCGTGGTCGGGTGCACATCATTGGAAAAAGTAACATTTCAATCTTGTTTGCAAAATAGTGATTCTTGGTGGGGGTCCAACCATAACCTTGTTGAGTTACAGGGTAAGTTCAAGATGGAACCCATTGAAAGAGTTGATAAAGAAATGCTAAAACTTTTGAGCTTAGGCAACCTGGAAACCTTGGAAAACATTCTGATGGACAACAGTGGATTTTTGTCTAAATGGAAGGGAACACATCCCGTCCAGGGACTGTACGAAGATGGTATATTCAGCACATTCCTTCCTGGAGATGAATTTCCAGGCCAGTTCAGCCATAGAAGCAGAGGGTCCTCTGTATCCTTTACTGTGCCTTTACTTCCCAATCTCAATATACGAGGGCTGAATGTCTTCTCGGTCATAGCACAATCCAACAACAATGATTCTTATCCTTTGACCAATATTGTCAATATTGACGGTTCAGATTATCCGACAATTACCGTTGTGATTAATAAGAGCAAGGGGCTGAAGTGGATCCATGGTCCAGACTTCTCTAGCGTTCCGGGTGAAGGAAAACATGTGATATGGTTAAGTCACTGGAAGTTTGGGAATCGACTTACATGTGGTGATGAGGTGACTATTTTAATATATACGAAATCTGATTTCAAGGTAAATGAGTGTGGCATCCAGCTTGTTTACTACGATGAGAAAGATCATGTGGCTTCGACCACGGACGATCCTTGTTTTCTCCGAGCTGGAGTTCGGTCAACAATACCCTCTCATCCGAGGGTGAAAGGAATAACCTTCCTAAGCTGTTACGGAATAGCACCTAGTATAATTGATGAAAATATTGATCTCATTAGGGATATCAATGAAAAATCAGAGAAAGAAGAAGGGCAAGAGGGTGACCTCGTCCTCACTCTTGCAGAACAAAGTAGCAGAGAACATTTACCATATACTAAACCTCCTATACTGTTCATACAGCAGTGGAATGACGGTTTTGCCCCTGAGGTTGCTGGGGTGGGAAAGAGAAGAGAAGGGATTCAAGAATCAAGATTATGGTGGGCTTCGGGGGAAGGGTTTGGGTTTGTTTTCGGAGTGGTGGATTCGAAAATTTTGATCGAGTTTGGGGGGATAATTTTCCGCAGGAAAAAGGTTCTGTTGTGTGTCTTGGACTATTTGGTTTTGGTTAAAGGAGTTTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

1245

Amino Acids

141.21

Weight (kDa)

6.79

Isoelectric Point (pI)

47.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TIR PF01582 24 - 196 1.6e-53 TIR domain
TIR_2 PF13676 26 - 123 5.1e-17 TIR domain
NB-ARC PF00931 205 - 376 7.3e-15 NB-ARC domain
WHD_ROQ1 PF23282 447 - 515 1.2e-18 Disease resistance protein Roq1-like, winged-helix domain
LRR_14 PF23598 780 - 927 5.4e-07 Leucine-rich repeat region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000164)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02320 FvH4_1g21472 FvH4_2g00813 FvH4_2g02512 FvH4_2g03921 FvH4_2g23460 FvH4_3g29141 FvH4_4g05791 FvH4_4g06321 FvH4_4g15595 FvH4_4g18162 FvH4_4g18163 FvH4_4g29541 FvH4_4g29541 FvH4_4g29541 FvH4_4g29541 FvH4_4g29541 FvH4_5g31093 FvH4_6g01982 FvH4_6g21931 FvH4_6g44691 FvH4_6g48541
prunus_persica Prupe.1G074100_v2.0.a1 Prupe.3G021400_v2.0.a1
pyrus_communis pycom02g18570 pycom14g00670
rosa_chinensis RchiOBHm_Chr1g0379201 RchiOBHm_Chr1g0379361 RchiOBHm_Chr4g0405981 RchiOBHm_Chr5g0073641 RchiOBHm_Chr5g0073651 RchiOBHm_Chr7g0236661
rosa_multiflora Rmu_co8179562.1_g000001 Rmu_co8343647.1_g000001 Rmu_sc0000041.1_g000017 Rmu_sc0000114.1_g000020 Rmu_sc0000286.1_g000006 Rmu_sc0000308.1_g000038 Rmu_sc0000365.1_g000061 Rmu_sc0000365.1_g000062 Rmu_sc0000538.1_g000060 Rmu_sc0000538.1_g000061 Rmu_sc0000586.1_g000016 Rmu_sc0000898.1_g000007 Rmu_sc0000913.1_g000003 Rmu_sc0000913.1_g000004 Rmu_sc0000996.1_g000006 Rmu_sc0000996.1_g000007 Rmu_sc0000998.1_g000003 Rmu_sc0001350.1_g000009 Rmu_sc0002079.1_g000009 Rmu_sc0002200.1_g000013 Rmu_sc0002226.1_g000025 Rmu_sc0002279.1_g000014 Rmu_sc0002478.1_g000014 Rmu_sc0002717.1_g000004 Rmu_sc0002868.1_g000027 Rmu_sc0002889.1_g000043 Rmu_sc0003023.1_g000001 Rmu_sc0003110.1_g000006 Rmu_sc0003226.1_g000028 Rmu_sc0003226.1_g000029 Rmu_sc0003337.1_g000053 Rmu_sc0003558.1_g000007 Rmu_sc0004345.1_g000014 Rmu_sc0004383.1_g000007 Rmu_sc0004888.1_g000021 Rmu_sc0005114.1_g000012 Rmu_sc0005223.1_g000019 Rmu_sc0005223.1_g000020 Rmu_sc0005639.1_g000025 Rmu_sc0005685.1_g000027 Rmu_sc0005992.1_g000002 Rmu_sc0006326.1_g000034 Rmu_sc0006326.1_g000035 Rmu_sc0007390.1_g000012 Rmu_sc0007451.1_g000006 Rmu_sc0007825.1_g000003 Rmu_sc0008600.1_g000023 Rmu_sc0009291.1_g000003 Rmu_sc0012046.1_g000001 Rmu_sc0012046.1_g000002 Rmu_sc0012710.1_g000001 Rmu_sc0015238.1_g000001 Rmu_sc0016125.1_g000003 Rmu_sc0016175.1_g000001 Rmu_sc0016898.1_g000001 Rmu_sc0017323.1_g000010 Rmu_sc0017874.1_g000002 Rmu_sc0019167.1_g000001 Rmu_sc0020815.1_g000006 Rmu_sc0025564.1_g000001 Rmu_sc0026418.1_g000001 Rmu_sc0035188.1_g000002 Rmu_sc0039254.1_g000001 Rmu_ssc0000120.1_g000015 Rmu_ssc0000120.1_g000016 Rmu_ssc0000330.1_g000023 Rmu_ssc0000433.1_g000004
rosa_roxburghii Rroxscaffold_1G00047130 Rroxscaffold_1G00051320 Rroxscaffold_1G00056600 Rroxscaffold_2G00109650 Rroxscaffold_2G00119980 Rroxscaffold_3G00222550 Rroxscaffold_3G00224980 Rroxscaffold_3G00251020 Rroxscaffold_6G00411190 Rroxscaffold_7G00166520 Rroxscaffold_7G00172920 Rroxscaffold_7G00191860 Rroxscaffold_7G00194430
rosa_rugosa Rorug01G0198900 Rorug01G0217300 Rorug01G0244500 Rorug02G0147400 Rorug02G0152200 Rorug02G0595500 Rorug02G0595600 Rorug03G0060500 Rorug03G0203000 Rorug03G0285800 Rorug04G0027200 Rorug04G0027300 Rorug04G0225800 Rorug05G0073400 Rorug05G0213300 Rorug05G0324600 Rorug05G0390900 Rorug05G0391000 Rorug05G0391100 Rorug05G0391200 Rorug05G0462900 Rorug05G0473000 Rorug06G0256500 Rorug07G0199000 Rorug07G0208800 Rorug07G0208800 Rorug07G0316600 Rorug07G0316700
rosa_samantha Rh2BG532400 Rh2CG581900 Rh3CG322600 Rh6AG079900 Rh6AG250800 Rh6AG496300 Rh6BG506100 Rh6CG126000 Rh6CG511700 Rh6DG109400 Rh6DG112700 Rh7CG104500 Rh7CG322000 Rh7CG431500
rosa_wichuraiana Rw0G020410 Rw1G009190 Rw1G014580 Rw1G021000 Rw1G022190 Rw2G025900 Rw2G029920 Rw2G037530 Rw3G018560 Rw3G020560 Rw4G008500 Rw4G022520 Rw5G019030 Rw5G031180 Rw5G044830 Rw6G005010 Rw6G006890 Rw6G011330 Rw6G011380 Rw6G023900 Rw7G028490 Rw7G030170 Rw7G030370 Rw7G032030 Rw7G032040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 729
Acc65I GGTACC 1 cut(s) 1619
AccB1I GGYRCC 2 cut(s) 282, 1619
AccI GTMKAC 1 cut(s) 2343
AccII CGCG 1 cut(s) 1515
AciI CCGC 2 cut(s) 2433, 3676
AclWI GGATC 9 cut(s) 356, 661, 951, 1164, 1936, 2433, 3061, 3074, 3263
AcsI RAATTY 7 cut(s) 719, 782, 1787, 1850, 2335, 2849, 3645
AcuI CTGAAG 2 cut(s) 42, 3080
AdeI CACNNNGTG 1 cut(s) 1289
AfaI GTAC 5 cut(s) 160, 1621, 2151, 2509, 2810
AfiI CCNNNNNNNGG 5 cut(s) 375, 1439, 2565, 2801, 3101
AflII CTTAAG 1 cut(s) 583
AflIII ACRYGT 2 cut(s) 3109, 3152
AgeI ACCGGT 1 cut(s) 984
AhdI GACNNNNNGTC 1 cut(s) 1990
AhlI ACTAGT 1 cut(s) 2257
AjiI CACGTC 1 cut(s) 2197
AjnI CCWGG 6 cut(s) 994, 2270, 2727, 2799, 2839, 2854
Alw21I GWGCWC 2 cut(s) 2291, 2573
Alw26I GTCTC 5 cut(s) 621, 1894, 2019, 2068, 2481
Alw44I GTGCAC 1 cut(s) 2569
AlwI GGATC 9 cut(s) 356, 661, 951, 1164, 1936, 2433, 3061, 3074, 3263
AlwNI CAGNNNCTG 2 cut(s) 476, 2806
AoxI GGCC 2 cut(s) 2479, 2857
ApaLI GTGCAC 1 cut(s) 2569
ApeKI GCWGC 1 cut(s) 476
ApoI RAATTY 7 cut(s) 719, 782, 1787, 1850, 2335, 2849, 3645
ArsI GACNNNNNNTTYG 2 cut(s) 376, 408
AseI ATTAAT 1 cut(s) 3042
AsiGI ACCGGT 1 cut(s) 984
Asp700I GAANNNNTTC 6 cut(s) 113, 1278, 1788, 2745, 2942, 3573
Asp718I GGTACC 1 cut(s) 1619
AspLEI GCGC 1 cut(s) 576
AspS9I GGNCC 4 cut(s) 952, 2631, 2883, 3074
AsuC2I CCSGG 2 cut(s) 1433, 3096
AsuHPI GGTGA 9 cut(s) 107, 203, 457, 1301, 3110, 3170, 3178, 3334, 3449
AsuII TTCGAA 1 cut(s) 3641
AvaII GGWCC 4 cut(s) 952, 2631, 2883, 3074
AxyI CCTNAGG 1 cut(s) 3540
BaeGI GKGCMC 1 cut(s) 2573
BamHI GGATCC 1 cut(s) 3066
BanI GGYRCC 2 cut(s) 282, 1619
BbsI GAAGAC 5 cut(s) 105, 116, 340, 1307, 2935
Bbv12I GWGCWC 2 cut(s) 2291, 2573
BbvI GCAGC 1 cut(s) 463
BciT130I CCWGG 6 cut(s) 996, 2272, 2729, 2801, 2841, 2856
BciVI GTATCC 1 cut(s) 2902
BclI TGATCA 5 cut(s) 303, 328, 1177, 1336, 2544
BcnI CCSGG 2 cut(s) 1433, 3096
BcoDI GTCTC 5 cut(s) 621, 1894, 2019, 2068, 2481
BcuI ACTAGT 1 cut(s) 2257
BfmI CTRYAG 2 cut(s) 477, 1794
BfrI CTTAAG 1 cut(s) 583
BfuI GTATCC 1 cut(s) 2902
BglII AGATCT 1 cut(s) 481
BisI GCNGC 1 cut(s) 477
BlsI GCNGC 1 cut(s) 478
BmcAI AGTACT 1 cut(s) 2151
Bme1390I CCNGG 8 cut(s) 996, 1433, 2272, 2729, 2801, 2841, 2856, 3096
Bme18I GGWCC 4 cut(s) 952, 2631, 2883, 3074
BmeRI GACNNNNNGTC 1 cut(s) 1990
BmgBI CACGTC 1 cut(s) 2197
BmgT120I GGNCC 4 cut(s) 952, 2631, 2883, 3074
BmiI GGNNCC 8 cut(s) 284, 1554, 1621, 2438, 2632, 2676, 2884, 3068
BmrFI CCNGG 8 cut(s) 996, 1433, 2272, 2729, 2801, 2841, 2856, 3096
BmsI GCATC 7 cut(s) 278, 746, 952, 1588, 1719, 1766, 3225
BpiI GAAGAC 5 cut(s) 105, 116, 340, 1307, 2935
BpmI CTGGAG 4 cut(s) 233, 1733, 2862, 3309
Bpu10I CCTNAGC 2 cut(s) 2719, 3341
Bpu14I TTCGAA 1 cut(s) 3641
BpuEI CTTGAG 5 cut(s) 103, 603, 2027, 2275, 2368
BpuMI CCSGG 2 cut(s) 1433, 3096
BsaBI GATNNNNATC 3 cut(s) 360, 942, 2979
BsaI GGTCTC 1 cut(s) 2481
BsaJI CCNNGG 9 cut(s) 91, 2271, 2330, 2559, 2736, 2800, 3070, 3261, 3317
BsaWI WCCGGW 2 cut(s) 984, 2455
BsaXI ACNNNNNCTCC 2 cut(s) 3481, 3511
Bsc4I CCNNNNNNNGG 5 cut(s) 375, 1439, 2565, 2801, 3101
Bse118I RCCGGY 1 cut(s) 984
Bse1I ACTGG 8 cut(s) 216, 1038, 1203, 2148, 2189, 2482, 2860, 3134
Bse21I CCTNAGG 1 cut(s) 3540
Bse3DI GCAATG 1 cut(s) 2411
Bse8I GATNNNNATC 3 cut(s) 360, 942, 2979
BseBI CCWGG 6 cut(s) 996, 2272, 2729, 2801, 2841, 2856
BseDI CCNNGG 9 cut(s) 91, 2271, 2330, 2559, 2736, 2800, 3070, 3261, 3317
BseGI GGATG 9 cut(s) 22, 365, 1135, 1734, 1781, 2380, 2791, 3216, 3313
BseJI GATNNNNATC 3 cut(s) 360, 942, 2979
BseLI CCNNNNNNNGG 5 cut(s) 375, 1439, 2565, 2801, 3101
BseMI GCAATG 1 cut(s) 2411
BseMII CTCAG 5 cut(s) 560, 1783, 1966, 2443, 3531
BseNI ACTGG 8 cut(s) 216, 1038, 1203, 2148, 2189, 2482, 2860, 3134
BseRI GAGGAG 2 cut(s) 25, 331
BseSI GKGCMC 1 cut(s) 2573
BseXI GCAGC 1 cut(s) 463
BseYI CCCAGC 1 cut(s) 3548
BsgI GTGCAG 2 cut(s) 1047, 1643
Bsh1236I CGCG 1 cut(s) 1515
BshFI GGCC 2 cut(s) 2481, 2859
BshNI GGYRCC 2 cut(s) 282, 1619
BshTI ACCGGT 1 cut(s) 984
BsiHKAI GWGCWC 2 cut(s) 2291, 2573
BsiSI CCGG 5 cut(s) 206, 985, 1433, 2456, 3095
BsiWI CGTACG 1 cut(s) 158
BslFI GGGAC 2 cut(s) 217, 2817
BslI CCNNNNNNNGG 5 cut(s) 375, 1439, 2565, 2801, 3101
BsmAI GTCTC 5 cut(s) 621, 1894, 2019, 2068, 2481
BsmFI GGGAC 2 cut(s) 217, 2817
BsmI GAATGC 4 cut(s) 151, 693, 981, 1443
BsnI GGCC 2 cut(s) 2481, 2859
Bso31I GGTCTC 1 cut(s) 2481
Bsp119I TTCGAA 1 cut(s) 3641
Bsp1286I GDGCHC 2 cut(s) 2291, 2573
Bsp1407I TGTACA 1 cut(s) 2507
Bsp19I CCATGG 1 cut(s) 3070
Bsp68I TCGCGA 1 cut(s) 1515
BspACI CCGC 2 cut(s) 2433, 3676
BspANI GGCC 2 cut(s) 2481, 2859
BspCNI CTCAG 5 cut(s) 561, 1782, 1965, 2442, 3532
BspFNI CGCG 1 cut(s) 1515
BspHI TCATGA 4 cut(s) 70, 306, 1339, 1963
BspLI GGNNCC 8 cut(s) 284, 1554, 1621, 2438, 2632, 2676, 2884, 3068
BspMAI CTGCAG 2 cut(s) 481, 1798
BspPI GGATC 9 cut(s) 356, 661, 951, 1164, 1936, 2433, 3061, 3074, 3263
BspT104I TTCGAA 1 cut(s) 3641
BspT107I GGYRCC 2 cut(s) 282, 1619
BspTI CTTAAG 1 cut(s) 583
BspTNI GGTCTC 1 cut(s) 2481
BsrDI GCAATG 1 cut(s) 2411
BsrFI RCCGGY 1 cut(s) 984
BsrGI TGTACA 1 cut(s) 2507
BsrI ACTGG 8 cut(s) 216, 1038, 1203, 2148, 2189, 2482, 2860, 3134
BssAI RCCGGY 1 cut(s) 984
BssECI CCNNGG 9 cut(s) 91, 2271, 2330, 2559, 2736, 2800, 3070, 3261, 3317
BssNAI GTATAC 1 cut(s) 2344
BssT1I CCWWGG 2 cut(s) 2736, 3070
Bst1107I GTATAC 1 cut(s) 2344
Bst2UI CCWGG 6 cut(s) 996, 2272, 2729, 2801, 2841, 2856
Bst6I CTCTTC 5 cut(s) 43, 621, 1229, 1519, 3559
BstAFI CTTAAG 1 cut(s) 583
BstAUI TGTACA 1 cut(s) 2507
BstBI TTCGAA 1 cut(s) 3641
BstC8I GCNNGC 4 cut(s) 151, 578, 1119, 1369
BstDSI CCRYGG 4 cut(s) 2330, 2559, 3070, 3261
BstEII GGTNACC 1 cut(s) 3437
BstF5I GGATG 9 cut(s) 22, 365, 1135, 1734, 1781, 2380, 2791, 3216, 3313
BstFNI CGCG 1 cut(s) 1515
BstHHI GCGC 1 cut(s) 576
BstMAI GTCTC 5 cut(s) 621, 1894, 2019, 2068, 2481
BstMWI GCNNNNNNNGC 2 cut(s) 2865, 2874
BstNI CCWGG 6 cut(s) 996, 2272, 2729, 2801, 2841, 2856
BstNSI RCATGY 4 cut(s) 1121, 1371, 3113, 3156
BstPI GGTNACC 1 cut(s) 3437
BstSCI CCNGG 8 cut(s) 994, 1431, 2270, 2727, 2799, 2839, 2854, 3094
BstSFI CTRYAG 2 cut(s) 477, 1794
BstSLI GKGCMC 1 cut(s) 2573
BstUI CGCG 1 cut(s) 1515
BstV1I GCAGC 1 cut(s) 463
BstV2I GAAGAC 5 cut(s) 105, 116, 340, 1307, 2935
BstX2I RGATCY 5 cut(s) 481, 1156, 1941, 2425, 3066
BstYI RGATCY 5 cut(s) 481, 1156, 1941, 2425, 3066
BstZ17I GTATAC 1 cut(s) 2344
Bsu36I CCTNAGG 1 cut(s) 3540
BsuI GTATCC 1 cut(s) 2902
BsuRI GGCC 2 cut(s) 2481, 2859
BtgI CCRYGG 4 cut(s) 2330, 2559, 3070, 3261
BtgZI GCGATG 1 cut(s) 466
BtrI CACGTC 1 cut(s) 2197
BtsCI GGATG 9 cut(s) 22, 365, 1135, 1734, 1781, 2380, 2791, 3216, 3313
BtsI GCAGTG 2 cut(s) 2547, 3524
BtsIMutI CAGTG 9 cut(s) 117, 1180, 1196, 1777, 2196, 2547, 2767, 3127, 3524
BtuMI TCGCGA 1 cut(s) 1515
Cac8I GCNNGC 4 cut(s) 151, 578, 1119, 1369
CaiI CAGNNNCTG 2 cut(s) 476, 2806
CciI TCATGA 4 cut(s) 70, 306, 1339, 1963
CfoI GCGC 1 cut(s) 576
Cfr10I RCCGGY 1 cut(s) 984
Cfr13I GGNCC 4 cut(s) 952, 2631, 2883, 3074
Csp6I GTAC 5 cut(s) 159, 1620, 2150, 2508, 2809
CspAI ACCGGT 1 cut(s) 984
CviQI GTAC 5 cut(s) 159, 1620, 2150, 2508, 2809
DraIII CACNNNGTG 1 cut(s) 1289
DriI GACNNNNNGTC 1 cut(s) 1990
Eam1104I CTCTTC 5 cut(s) 43, 621, 1229, 1519, 3559
Eam1105I GACNNNNNGTC 1 cut(s) 1990
EarI CTCTTC 5 cut(s) 43, 621, 1229, 1519, 3559
Eco130I CCWWGG 2 cut(s) 2736, 3070
Eco31I GGTCTC 1 cut(s) 2481
Eco32I GATATC 4 cut(s) 775, 1294, 1426, 3400
Eco47I GGWCC 4 cut(s) 952, 2631, 2883, 3074
Eco57I CTGAAG 2 cut(s) 42, 3080
Eco81I CCTNAGG 1 cut(s) 3540
Eco91I GGTNACC 1 cut(s) 3437
EcoO109I RGGNCCY 1 cut(s) 2883
EcoO65I GGTNACC 1 cut(s) 3437
EcoRI GAATTC 1 cut(s) 1850
EcoRII CCWGG 6 cut(s) 994, 2270, 2727, 2799, 2839, 2854
EcoRV GATATC 4 cut(s) 775, 1294, 1426, 3400
EcoT14I CCWWGG 2 cut(s) 2736, 3070
EcoT22I ATGCAT 4 cut(s) 271, 967, 1503, 1720
ErhI CCWWGG 2 cut(s) 2736, 3070
FaqI GGGAC 2 cut(s) 217, 2817
FauI CCCGC 1 cut(s) 2426
FbaI TGATCA 5 cut(s) 303, 328, 1177, 1336, 2544
FblI GTMKAC 1 cut(s) 2343
Fnu4HI GCNGC 1 cut(s) 477
FokI GGATG 9 cut(s) 9, 352, 1122, 1741, 1788, 2387, 2778, 3203, 3300
Fsp4HI GCNGC 1 cut(s) 477
GlaI GCGC 1 cut(s) 575
GluI GCNGC 1 cut(s) 477
GsaI CCCAGC 1 cut(s) 3552
GsuI CTGGAG 4 cut(s) 233, 1733, 2862, 3309
HaeIII GGCC 2 cut(s) 2481, 2859
HapII CCGG 5 cut(s) 206, 985, 1433, 2456, 3095
HhaI GCGC 1 cut(s) 576
Hin6I GCGC 1 cut(s) 574
HinP1I GCGC 1 cut(s) 574
HincII GTYRAC 3 cut(s) 592, 708, 3300
HindII GTYRAC 3 cut(s) 592, 708, 3300
HindIII AAGCTT 2 cut(s) 2035, 2117
HpaII CCGG 5 cut(s) 206, 985, 1433, 2456, 3095
HphI GGTGA 9 cut(s) 107, 203, 457, 1301, 3110, 3170, 3178, 3334, 3449
Hpy166II GTNNAC 9 cut(s) 592, 708, 952, 1187, 2194, 2344, 2571, 3229, 3300
Hpy8I GTNNAC 9 cut(s) 592, 708, 952, 1187, 2194, 2344, 2571, 3229, 3300
HpyCH4IV ACGT 2 cut(s) 161, 2196
HpyF10VI GCNNNNNNNGC 2 cut(s) 2865, 2874
HpySE526I ACGT 2 cut(s) 161, 2196
HspAI GCGC 1 cut(s) 574
KpnI GGTACC 1 cut(s) 1623
Ksp22I TGATCA 5 cut(s) 303, 328, 1177, 1336, 2544
LmnI GCTCC 1 cut(s) 1552
Lsp1109I GCAGC 1 cut(s) 463
LweI GCATC 7 cut(s) 278, 746, 952, 1588, 1719, 1766, 3225
MaeII ACGT 2 cut(s) 161, 2196
MfeI CAATTG 3 cut(s) 1476, 1629, 2503
MflI RGATCY 5 cut(s) 481, 1156, 1941, 2425, 3066
MhlI GDGCHC 2 cut(s) 2291, 2573
MlyI GAGTC 5 cut(s) 533, 1297, 1412, 2063, 2359
MmeI TCCRAC 4 cut(s) 586, 2658, 2988, 3047
Mph1103I ATGCAT 4 cut(s) 271, 967, 1503, 1720
MroXI GAANNNNTTC 6 cut(s) 113, 1278, 1788, 2745, 2942, 3573
MslI CAYNNNNRTG 4 cut(s) 960, 1382, 1962, 2750
MspA1I CMGCKG 2 cut(s) 326, 2433
MspCI CTTAAG 1 cut(s) 583
MspI CCGG 5 cut(s) 206, 985, 1433, 2456, 3095
MspR9I CCNGG 8 cut(s) 996, 1433, 2272, 2729, 2801, 2841, 2856, 3096
MunI CAATTG 3 cut(s) 1476, 1629, 2503
Mva1269I GAATGC 4 cut(s) 151, 693, 981, 1443
MvaI CCWGG 6 cut(s) 996, 2272, 2729, 2801, 2841, 2856
MvnI CGCG 1 cut(s) 1515
MwoI GCNNNNNNNGC 2 cut(s) 2865, 2874
NciI CCSGG 2 cut(s) 1433, 3096
NcoI CCATGG 1 cut(s) 3070
NlaIV GGNNCC 8 cut(s) 284, 1554, 1621, 2438, 2632, 2676, 2884, 3068
NmuCI GTSAC 5 cut(s) 740, 2260, 3125, 3166, 3437
NruI TCGCGA 1 cut(s) 1515
NsiI ATGCAT 4 cut(s) 271, 967, 1503, 1720
NspI RCATGY 4 cut(s) 1121, 1371, 3113, 3156
NspV TTCGAA 1 cut(s) 3641
PaeI GCATGC 2 cut(s) 1121, 1371
PagI TCATGA 4 cut(s) 70, 306, 1339, 1963
PciI ACATGT 2 cut(s) 3109, 3152
PcsI WCGNNNNNNNCGW 1 cut(s) 163
PctI GAATGC 4 cut(s) 151, 693, 981, 1443
PdmI GAANNNNTTC 6 cut(s) 113, 1278, 1788, 2745, 2942, 3573
Pfl23II CGTACG 1 cut(s) 158
PflFI GACNNNGTC 1 cut(s) 3443
PfoI TCCNGGA 3 cut(s) 994, 1431, 2839
PinAI ACCGGT 1 cut(s) 984
PkrI GCNGC 1 cut(s) 478
PleI GAGTC 5 cut(s) 532, 1297, 1412, 2062, 2358
PpsI GAGTC 5 cut(s) 532, 1297, 1412, 2062, 2358
PpuMI RGGWCCY 1 cut(s) 2883
PscI ACATGT 2 cut(s) 3109, 3152
PshBI ATTAAT 1 cut(s) 3042
PsiI TTATAA 1 cut(s) 729
Psp5II RGGWCCY 1 cut(s) 2883
Psp6I CCWGG 6 cut(s) 994, 2270, 2727, 2799, 2839, 2854
PspEI GGTNACC 1 cut(s) 3437
PspFI CCCAGC 1 cut(s) 3548
PspGI CCWGG 6 cut(s) 994, 2270, 2727, 2799, 2839, 2854
PspLI CGTACG 1 cut(s) 158
PspN4I GGNNCC 8 cut(s) 284, 1554, 1621, 2438, 2632, 2676, 2884, 3068
PspPI GGNCC 4 cut(s) 952, 2631, 2883, 3074
PspPPI RGGWCCY 1 cut(s) 2883
PstI CTGCAG 2 cut(s) 481, 1798
PstNI CAGNNNCTG 2 cut(s) 476, 2806
PsuI RGATCY 5 cut(s) 481, 1156, 1941, 2425, 3066
PsyI GACNNNGTC 1 cut(s) 3443
PvuII CAGCTG 1 cut(s) 326
RruI TCGCGA 1 cut(s) 1515
RsaI GTAC 5 cut(s) 160, 1621, 2151, 2509, 2810
RsaNI GTAC 5 cut(s) 159, 1620, 2150, 2508, 2809
RseI CAYNNNNRTG 4 cut(s) 960, 1382, 1962, 2750
SatI GCNGC 1 cut(s) 477
Sau96I GGNCC 4 cut(s) 952, 2631, 2883, 3074
SbfI CCTGCAGG 1 cut(s) 1798
ScaI AGTACT 1 cut(s) 2151
SchI GAGTC 5 cut(s) 533, 1297, 1412, 2063, 2359
ScrFI CCNGG 8 cut(s) 996, 1433, 2272, 2729, 2801, 2841, 2856, 3096
SdaI CCTGCAGG 1 cut(s) 1798
SduI GDGCHC 2 cut(s) 2291, 2573
SfaNI GCATC 7 cut(s) 278, 746, 952, 1588, 1719, 1766, 3225
SfcI CTRYAG 2 cut(s) 477, 1794
SfuI TTCGAA 1 cut(s) 3641
SinI GGWCC 4 cut(s) 952, 2631, 2883, 3074
SmiMI CAYNNNNRTG 4 cut(s) 960, 1382, 1962, 2750
SmlI CTYRAG 6 cut(s) 82, 583, 618, 2006, 2290, 2347
SmoI CTYRAG 6 cut(s) 82, 583, 618, 2006, 2290, 2347
SpeI ACTAGT 1 cut(s) 2257
SphI GCATGC 2 cut(s) 1121, 1371
Sse8387I CCTGCAGG 1 cut(s) 1798
SsiI CCGC 2 cut(s) 2433, 3676
SspI AATATT 4 cut(s) 199, 2995, 3004, 3382
StyD4I CCNGG 8 cut(s) 994, 1431, 2270, 2727, 2799, 2839, 2854, 3094
StyI CCWWGG 2 cut(s) 2736, 3070
TaiI ACGT 2 cut(s) 164, 2199
TaqII GACCGA 2 cut(s) 2938, 3285
TatI WGTACW 2 cut(s) 2149, 2507
TscAI CASTG 9 cut(s) 124, 1187, 1203, 1777, 2196, 2547, 2767, 3134, 3524
TseFI GTSAC 5 cut(s) 740, 2260, 3125, 3166, 3437
TseI GCWGC 1 cut(s) 476
Tsp45I GTSAC 5 cut(s) 740, 2260, 3125, 3166, 3437
TspGWI ACGGA 5 cut(s) 328, 2347, 2548, 3278, 3366
TspRI CASTG 9 cut(s) 124, 1187, 1203, 1777, 2196, 2547, 2767, 3134, 3524
Tth111I GACNNNGTC 1 cut(s) 3443
Vha464I CTTAAG 1 cut(s) 583
VneI GTGCAC 1 cut(s) 2569
VpaK11BI GGWCC 4 cut(s) 952, 2631, 2883, 3074
VspI ATTAAT 1 cut(s) 3042
XapI RAATTY 7 cut(s) 719, 782, 1787, 1850, 2335, 2849, 3645
XbaI TCTAGA 2 cut(s) 911, 1540
XceI RCATGY 4 cut(s) 1121, 1371, 3113, 3156
XcmI CCANNNNNNNNNTGG 1 cut(s) 2057
XmiI GTMKAC 1 cut(s) 2343
XmnI GAANNNNTTC 6 cut(s) 113, 1278, 1788, 2745, 2942, 3573
ZrmI AGTACT 1 cut(s) 2151
Zsp2I ATGCAT 4 cut(s) 271, 967, 1503, 1720
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.