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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 2 cut(s) | 157, 207 |
| AatII | GACGTC | 1 cut(s) | 636 |
| Acc36I | ACCTGC | 4 cut(s) | 157, 207, 659, 667 |
| AccB1I | GGYRCC | 1 cut(s) | 18 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 237 |
| AccBSI | CCGCTC | 1 cut(s) | 564 |
| AccI | GTMKAC | 1 cut(s) | 248 |
| AccII | CGCG | 1 cut(s) | 556 |
| AccIII | TCCGGA | 1 cut(s) | 521 |
| AclWI | GGATC | 3 cut(s) | 95, 587, 600 |
| AcoI | YGGCCR | 1 cut(s) | 228 |
| AcyI | GRCGYC | 1 cut(s) | 633 |
| AfeI | AGCGCT | 1 cut(s) | 645 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 237, 333, 366, 603 |
| AjnI | CCWGG | 4 cut(s) | 82, 442, 587, 785 |
| AluBI | AGCT | 1 cut(s) | 704 |
| AluI | AGCT | 1 cut(s) | 704 |
| Alw21I | GWGCWC | 1 cut(s) | 706 |
| Alw26I | GTCTC | 2 cut(s) | 144, 468 |
| AlwI | GGATC | 3 cut(s) | 95, 587, 600 |
| Ama87I | CYCGRG | 2 cut(s) | 204, 548 |
| Aor13HI | TCCGGA | 1 cut(s) | 521 |
| Aor51HI | AGCGCT | 1 cut(s) | 645 |
| AoxI | GGCC | 5 cut(s) | 5, 108, 228, 440, 749 |
| ApeKI | GCWGC | 3 cut(s) | 641, 646, 722 |
| AspLEI | GCGC | 3 cut(s) | 268, 556, 646 |
| AspS9I | GGNCC | 2 cut(s) | 354, 583 |
| AsuHPI | GGTGA | 1 cut(s) | 394 |
| AvaI | CYCGRG | 2 cut(s) | 204, 548 |
| AvaII | GGWCC | 2 cut(s) | 354, 583 |
| BalI | TGGCCA | 1 cut(s) | 230 |
| BamHI | GGATCC | 1 cut(s) | 592 |
| BanI | GGYRCC | 1 cut(s) | 18 |
| BanII | GRGCYC | 2 cut(s) | 99, 706 |
| BbsI | GAAGAC | 1 cut(s) | 492 |
| Bbv12I | GWGCWC | 1 cut(s) | 706 |
| BbvI | GCAGC | 3 cut(s) | 633, 653, 709 |
| BceAI | ACGGC | 2 cut(s) | 761, 793 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 620, 654 |
| BciT130I | CCWGG | 4 cut(s) | 84, 444, 589, 787 |
| BclI | TGATCA | 1 cut(s) | 391 |
| BcoDI | GTCTC | 2 cut(s) | 144, 468 |
| BfaI | CTAG | 1 cut(s) | 269 |
| BfmI | CTRYAG | 1 cut(s) | 660 |
| BfoI | RGCGCY | 2 cut(s) | 269, 647 |
| BfuAI | ACCTGC | 4 cut(s) | 157, 207, 659, 667 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 13 |
| BglII | AGATCT | 1 cut(s) | 457 |
| BisI | GCNGC | 9 cut(s) | 5, 159, 565, 642, 647, 723, 767, 774, 783 |
| BlsI | GCNGC | 9 cut(s) | 6, 160, 566, 643, 648, 724, 768, 775, 784 |
| Bme1390I | CCNGG | 4 cut(s) | 84, 444, 589, 787 |
| Bme18I | GGWCC | 2 cut(s) | 354, 583 |
| BmeT110I | CYCGRG | 2 cut(s) | 204, 548 |
| BmgT120I | GGNCC | 2 cut(s) | 354, 583 |
| BmiI | GGNNCC | 5 cut(s) | 20, 40, 81, 585, 594 |
| BmrFI | CCNGG | 4 cut(s) | 84, 444, 589, 787 |
| BmsI | GCATC | 1 cut(s) | 731 |
| BpiI | GAAGAC | 1 cut(s) | 492 |
| BpuEI | CTTGAG | 1 cut(s) | 138 |
| BsaHI | GRCGYC | 1 cut(s) | 633 |
| BsaJI | CCNNGG | 7 cut(s) | 83, 252, 365, 443, 587, 588, 597 |
| BsaWI | WCCGGW | 1 cut(s) | 521 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 237, 333, 366, 603 |
| Bse1I | ACTGG | 2 cut(s) | 184, 298 |
| Bse3DI | GCAATG | 1 cut(s) | 544 |
| BseAI | TCCGGA | 1 cut(s) | 521 |
| BseBI | CCWGG | 4 cut(s) | 84, 444, 589, 787 |
| BseDI | CCNNGG | 7 cut(s) | 83, 252, 365, 443, 587, 588, 597 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 237, 333, 366, 603 |
| BseMI | GCAATG | 1 cut(s) | 544 |
| BseMII | CTCAG | 1 cut(s) | 728 |
| BseNI | ACTGG | 2 cut(s) | 184, 298 |
| BseRI | GAGGAG | 3 cut(s) | 132, 139, 696 |
| BseXI | GCAGC | 3 cut(s) | 633, 653, 709 |
| BseYI | CCCAGC | 1 cut(s) | 125 |
| Bsh1236I | CGCG | 1 cut(s) | 556 |
| Bsh1285I | CGRYCG | 1 cut(s) | 187 |
| BshFI | GGCC | 5 cut(s) | 7, 110, 230, 442, 751 |
| BshNI | GGYRCC | 1 cut(s) | 18 |
| BsiEI | CGRYCG | 1 cut(s) | 187 |
| BsiHKAI | GWGCWC | 1 cut(s) | 706 |
| BsiHKCI | CYCGRG | 2 cut(s) | 204, 548 |
| BsiSI | CCGG | 4 cut(s) | 13, 72, 522, 748 |
| BslFI | GGGAC | 1 cut(s) | 350 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 237, 333, 366, 603 |
| BsmAI | GTCTC | 2 cut(s) | 144, 468 |
| BsmBI | CGTCTC | 1 cut(s) | 144 |
| BsmFI | GGGAC | 1 cut(s) | 350 |
| BsnI | GGCC | 5 cut(s) | 7, 110, 230, 442, 751 |
| BsoBI | CYCGRG | 2 cut(s) | 204, 548 |
| Bsp1286I | GDGCHC | 2 cut(s) | 99, 706 |
| Bsp13I | TCCGGA | 1 cut(s) | 521 |
| Bsp143I | GATC | 7 cut(s) | 31, 87, 184, 233, 391, 457, 592 |
| Bsp19I | CCATGG | 1 cut(s) | 252 |
| BspANI | GGCC | 5 cut(s) | 7, 110, 230, 442, 751 |
| BspCNI | CTCAG | 1 cut(s) | 729 |
| BspEI | TCCGGA | 1 cut(s) | 521 |
| BspFNI | CGCG | 1 cut(s) | 556 |
| BspLI | GGNNCC | 5 cut(s) | 20, 40, 81, 585, 594 |
| BspMAI | CTGCAG | 1 cut(s) | 664 |
| BspMI | ACCTGC | 4 cut(s) | 157, 207, 659, 667 |
| BspPI | GGATC | 3 cut(s) | 95, 587, 600 |
| BspT107I | GGYRCC | 1 cut(s) | 18 |
| BsrBI | CCGCTC | 1 cut(s) | 564 |
| BsrDI | GCAATG | 1 cut(s) | 544 |
| BsrI | ACTGG | 2 cut(s) | 184, 298 |
| BssECI | CCNNGG | 7 cut(s) | 83, 252, 365, 443, 587, 588, 597 |
| BssMI | GATC | 7 cut(s) | 31, 87, 184, 233, 391, 457, 592 |
| BssNAI | GTATAC | 1 cut(s) | 249 |
| BssNI | GRCGYC | 1 cut(s) | 633 |
| BssT1I | CCWWGG | 1 cut(s) | 252 |
| Bst1107I | GTATAC | 1 cut(s) | 249 |
| Bst2UI | CCWGG | 4 cut(s) | 84, 444, 589, 787 |
| Bst4CI | ACNGT | 1 cut(s) | 734 |
| Bst6I | CTCTTC | 1 cut(s) | 120 |
| BstACI | GRCGYC | 1 cut(s) | 633 |
| BstC8I | GCNNGC | 3 cut(s) | 535, 628, 771 |
| BstDEI | CTNAG | 1 cut(s) | 737 |
| BstDSI | CCRYGG | 2 cut(s) | 252, 597 |
| BstFNI | CGCG | 1 cut(s) | 556 |
| BstH2I | RGCGCY | 2 cut(s) | 269, 647 |
| BstHHI | GCGC | 3 cut(s) | 268, 556, 646 |
| BstKTI | GATC | 7 cut(s) | 34, 90, 187, 236, 394, 460, 595 |
| BstMAI | GTCTC | 2 cut(s) | 144, 468 |
| BstMBI | GATC | 7 cut(s) | 31, 87, 184, 233, 391, 457, 592 |
| BstMCI | CGRYCG | 1 cut(s) | 187 |
| BstNI | CCWGG | 4 cut(s) | 84, 444, 589, 787 |
| BstNSI | RCATGY | 1 cut(s) | 413 |
| BstSCI | CCNGG | 4 cut(s) | 82, 442, 587, 785 |
| BstSFI | CTRYAG | 1 cut(s) | 660 |
| BstUI | CGCG | 1 cut(s) | 556 |
| BstV1I | GCAGC | 3 cut(s) | 633, 653, 709 |
| BstV2I | GAAGAC | 1 cut(s) | 492 |
| BstX2I | RGATCY | 3 cut(s) | 87, 457, 592 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 421 |
| BstYI | RGATCY | 3 cut(s) | 87, 457, 592 |
| BstZ17I | GTATAC | 1 cut(s) | 249 |
| BsuRI | GGCC | 5 cut(s) | 7, 110, 230, 442, 751 |
| BtgI | CCRYGG | 2 cut(s) | 252, 597 |
| BtsI | GCAGTG | 1 cut(s) | 798 |
| BtsIMutI | CAGTG | 2 cut(s) | 291, 798 |
| BveI | ACCTGC | 4 cut(s) | 157, 207, 659, 667 |
| Cac8I | GCNNGC | 3 cut(s) | 535, 628, 771 |
| CfoI | GCGC | 3 cut(s) | 268, 556, 646 |
| Cfr13I | GGNCC | 2 cut(s) | 354, 583 |
| CseI | GACGC | 2 cut(s) | 172, 792 |
| CviAII | CATG | 6 cut(s) | 237, 253, 379, 410, 426, 438 |
| DdeI | CTNAG | 1 cut(s) | 737 |
| DpnI | GATC | 7 cut(s) | 33, 89, 186, 235, 393, 459, 594 |
| DpnII | GATC | 7 cut(s) | 31, 87, 184, 233, 391, 457, 592 |
| EaeI | YGGCCR | 1 cut(s) | 228 |
| Eam1104I | CTCTTC | 1 cut(s) | 120 |
| EarI | CTCTTC | 1 cut(s) | 120 |
| Ecl136II | GAGCTC | 1 cut(s) | 704 |
| Eco130I | CCWWGG | 1 cut(s) | 252 |
| Eco24I | GRGCYC | 2 cut(s) | 99, 706 |
| Eco47I | GGWCC | 2 cut(s) | 354, 583 |
| Eco47III | AGCGCT | 1 cut(s) | 645 |
| Eco53kI | GAGCTC | 1 cut(s) | 704 |
| Eco88I | CYCGRG | 2 cut(s) | 204, 548 |
| EcoICRI | GAGCTC | 1 cut(s) | 704 |
| EcoO109I | RGGNCCY | 2 cut(s) | 354, 583 |
| EcoRII | CCWGG | 4 cut(s) | 82, 442, 587, 785 |
| EcoT14I | CCWWGG | 1 cut(s) | 252 |
| EcoT38I | GRGCYC | 2 cut(s) | 99, 706 |
| ErhI | CCWWGG | 1 cut(s) | 252 |
| Esp3I | CGTCTC | 1 cut(s) | 144 |
| FaeI | CATG | 6 cut(s) | 240, 256, 382, 413, 429, 441 |
| FaqI | GGGAC | 1 cut(s) | 350 |
| FatI | CATG | 6 cut(s) | 236, 252, 378, 409, 425, 437 |
| FauI | CCCGC | 2 cut(s) | 55, 778 |
| FbaI | TGATCA | 1 cut(s) | 391 |
| FblI | GTMKAC | 1 cut(s) | 248 |
| Fnu4HI | GCNGC | 9 cut(s) | 5, 159, 565, 642, 647, 723, 767, 774, 783 |
| FriOI | GRGCYC | 2 cut(s) | 99, 706 |
| Fsp4HI | GCNGC | 9 cut(s) | 5, 159, 565, 642, 647, 723, 767, 774, 783 |
| FspBI | CTAG | 1 cut(s) | 269 |
| GlaI | GCGC | 3 cut(s) | 267, 555, 645 |
| GluI | GCNGC | 9 cut(s) | 5, 159, 565, 642, 647, 723, 767, 774, 783 |
| GsaI | CCCAGC | 1 cut(s) | 129 |
| HaeII | RGCGCY | 2 cut(s) | 269, 647 |
| HaeIII | GGCC | 5 cut(s) | 7, 110, 230, 442, 751 |
| HapII | CCGG | 4 cut(s) | 13, 72, 522, 748 |
| HgaI | GACGC | 2 cut(s) | 172, 792 |
| HhaI | GCGC | 3 cut(s) | 268, 556, 646 |
| Hin1I | GRCGYC | 1 cut(s) | 633 |
| Hin1II | CATG | 6 cut(s) | 240, 256, 382, 413, 429, 441 |
| Hin6I | GCGC | 3 cut(s) | 266, 554, 644 |
| HinP1I | GCGC | 3 cut(s) | 266, 554, 644 |
| HinfI | GANTC | 1 cut(s) | 621 |
| HpaII | CCGG | 4 cut(s) | 13, 72, 522, 748 |
| HphI | GGTGA | 1 cut(s) | 394 |
| Hpy166II | GTNNAC | 1 cut(s) | 249 |
| Hpy188I | TCNGA | 4 cut(s) | 366, 391, 711, 738 |
| Hpy188III | TCNNGA | 2 cut(s) | 455, 522 |
| Hpy8I | GTNNAC | 1 cut(s) | 249 |
| Hpy99I | CGWCG | 7 cut(s) | 57, 166, 561, 635, 638, 782, 808 |
| HpyAV | CCTTC | 1 cut(s) | 574 |
| HpyCH4III | ACNGT | 1 cut(s) | 734 |
| HpyCH4IV | ACGT | 3 cut(s) | 27, 137, 633 |
| HpyCH4V | TGCA | 7 cut(s) | 307, 437, 611, 641, 662, 668, 694 |
| HpyF3I | CTNAG | 1 cut(s) | 737 |
| HpySE526I | ACGT | 3 cut(s) | 27, 137, 633 |
| Hsp92I | GRCGYC | 1 cut(s) | 633 |
| Hsp92II | CATG | 6 cut(s) | 240, 256, 382, 413, 429, 441 |
| HspAI | GCGC | 3 cut(s) | 266, 554, 644 |
| Kpn2I | TCCGGA | 1 cut(s) | 521 |
| Ksp22I | TGATCA | 1 cut(s) | 391 |
| Kzo9I | GATC | 7 cut(s) | 31, 87, 184, 233, 391, 457, 592 |
| LmnI | GCTCC | 4 cut(s) | 44, 213, 561, 709 |
| Lsp1109I | GCAGC | 3 cut(s) | 633, 653, 709 |
| LweI | GCATC | 1 cut(s) | 731 |
| MaeI | CTAG | 1 cut(s) | 269 |
| MaeII | ACGT | 3 cut(s) | 27, 137, 633 |
| MaeIII | GTNAC | 2 cut(s) | 175, 289 |
| MalI | GATC | 7 cut(s) | 33, 89, 186, 235, 393, 459, 594 |
| MbiI | CCGCTC | 1 cut(s) | 564 |
| MboI | GATC | 7 cut(s) | 31, 87, 184, 233, 391, 457, 592 |
| MboII | GAAGA | 6 cut(s) | 107, 443, 497, 503, 506, 509 |
| MflI | RGATCY | 3 cut(s) | 87, 457, 592 |
| MhlI | GDGCHC | 2 cut(s) | 99, 706 |
| MlsI | TGGCCA | 1 cut(s) | 230 |
| MluCI | AATT | 2 cut(s) | 329, 526 |
| MluNI | TGGCCA | 1 cut(s) | 230 |
| MlyI | GAGTC | 1 cut(s) | 630 |
| MmeI | TCCRAC | 1 cut(s) | 734 |
| Mox20I | TGGCCA | 1 cut(s) | 230 |
| MroI | TCCGGA | 1 cut(s) | 521 |
| MscI | TGGCCA | 1 cut(s) | 230 |
| MseI | TTAA | 1 cut(s) | 820 |
| Msp20I | TGGCCA | 1 cut(s) | 230 |
| MspI | CCGG | 4 cut(s) | 13, 72, 522, 748 |
| MspR9I | CCNGG | 4 cut(s) | 84, 444, 589, 787 |
| MvaI | CCWGG | 4 cut(s) | 84, 444, 589, 787 |
| MvnI | CGCG | 1 cut(s) | 556 |
| NcoI | CCATGG | 1 cut(s) | 252 |
| NdeII | GATC | 7 cut(s) | 31, 87, 184, 233, 391, 457, 592 |
| NlaIII | CATG | 6 cut(s) | 240, 256, 382, 413, 429, 441 |
| NlaIV | GGNNCC | 5 cut(s) | 20, 40, 81, 585, 594 |
| NmeAIII | GCCGAG | 2 cut(s) | 80, 523 |
| NmuCI | GTSAC | 1 cut(s) | 289 |
| NspI | RCATGY | 1 cut(s) | 413 |
| PaqCI | CACCTGC | 2 cut(s) | 157, 207 |
| PasI | CCCWGGG | 1 cut(s) | 588 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 630 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 237 |
| PkrI | GCNGC | 9 cut(s) | 6, 160, 566, 643, 648, 724, 768, 775, 784 |
| Ple19I | CGATCG | 1 cut(s) | 187 |
| PleI | GAGTC | 1 cut(s) | 629 |
| PpsI | GAGTC | 1 cut(s) | 629 |
| PpuMI | RGGWCCY | 2 cut(s) | 354, 583 |
| Psp124BI | GAGCTC | 1 cut(s) | 706 |
| Psp5II | RGGWCCY | 2 cut(s) | 354, 583 |
| Psp6I | CCWGG | 4 cut(s) | 82, 442, 587, 785 |
| PspFI | CCCAGC | 1 cut(s) | 125 |
| PspGI | CCWGG | 4 cut(s) | 82, 442, 587, 785 |
| PspN4I | GGNNCC | 5 cut(s) | 20, 40, 81, 585, 594 |
| PspPI | GGNCC | 2 cut(s) | 354, 583 |
| PspPPI | RGGWCCY | 2 cut(s) | 354, 583 |
| PstI | CTGCAG | 1 cut(s) | 664 |
| PsuI | RGATCY | 3 cut(s) | 87, 457, 592 |
| PvuI | CGATCG | 1 cut(s) | 187 |
| SacI | GAGCTC | 1 cut(s) | 706 |
| SaqAI | TTAA | 1 cut(s) | 820 |
| SatI | GCNGC | 9 cut(s) | 5, 159, 565, 642, 647, 723, 767, 774, 783 |
| Sau3AI | GATC | 7 cut(s) | 31, 87, 184, 233, 391, 457, 592 |
| Sau96I | GGNCC | 2 cut(s) | 354, 583 |
| SchI | GAGTC | 1 cut(s) | 630 |
| ScrFI | CCNGG | 4 cut(s) | 84, 444, 589, 787 |
| SduI | GDGCHC | 2 cut(s) | 99, 706 |
| SfaNI | GCATC | 1 cut(s) | 731 |
| SfcI | CTRYAG | 1 cut(s) | 660 |
| SinI | GGWCC | 2 cut(s) | 354, 583 |
| SmlI | CTYRAG | 1 cut(s) | 153 |
| SmoI | CTYRAG | 1 cut(s) | 153 |
| Sse9I | AATT | 2 cut(s) | 329, 526 |
| SspMI | CTAG | 1 cut(s) | 269 |
| SstI | GAGCTC | 1 cut(s) | 706 |
| StyD4I | CCNGG | 4 cut(s) | 82, 442, 587, 785 |
| StyI | CCWWGG | 1 cut(s) | 252 |
| TaaI | ACNGT | 1 cut(s) | 734 |
| TaiI | ACGT | 3 cut(s) | 30, 140, 636 |
| TaqI | TCGA | 3 cut(s) | 52, 454, 716 |
| TasI | AATT | 2 cut(s) | 329, 526 |
| TauI | GCSGC | 6 cut(s) | 7, 161, 567, 769, 776, 785 |
| Tru1I | TTAA | 1 cut(s) | 820 |
| Tru9I | TTAA | 1 cut(s) | 820 |
| TscAI | CASTG | 2 cut(s) | 298, 805 |
| TseFI | GTSAC | 1 cut(s) | 289 |
| TseI | GCWGC | 3 cut(s) | 641, 646, 722 |
| Tsp45I | GTSAC | 1 cut(s) | 289 |
| TspDTI | ATGAA | 1 cut(s) | 107 |
| TspGWI | ACGGA | 2 cut(s) | 574, 614 |
| TspRI | CASTG | 2 cut(s) | 298, 805 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 237 |
| VpaK11BI | GGWCC | 2 cut(s) | 354, 583 |
| XceI | RCATGY | 1 cut(s) | 413 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 32, 259 |
| XmiI | GTMKAC | 1 cut(s) | 248 |
| XspI | CTAG | 1 cut(s) | 269 |
| ZraI | GACGTC | 1 cut(s) | 634 |