FvH4_2g02512

Protein FAR1-RELATED SEQUENCE 5-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0000164
Physical Location & Seq
Forward (+)
2003616 .. 2004795
1180 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g02512.t1

Sequence Viewer

Length: 921 bp
ATGTCAAGCAGCCAACGAGCTGAAAGTGCACACTCATTCTTTAAGGATTATGTTTCTGATAAAAATTCTTTGGTAGAGTTCATGGTTCGGTTCAATAGGGGTATGTTACATAAACGACGTGAGGAGTTGATTGCAGATCATATTGACGTCAACGAGAAGCCTAGATTTAAGTGTCCCATTAAGATGGAAAAGCAAATGTCTGATATTTATACACGGAAGTACTATTATAAATTTCAAGATCAGTTGTGGGAAAGCTACAACTACAATCAAGAGGTCAGATCGGAGGATGAAAATAAGTGCATACTTAAGGTAACGCGTGAGGATCATGAAGATGGAAGAGCTCGGGTCATCATGTATGATAAATCAAAAGATTTTGCTTCGTGTACTTGCAAATTGTTTGAGAGTGCAGGAGTTCCATGTAGACATGTTTTGGCATACTTGCACAGAATACATCAACTGCATAAATTGCCAGATCAGTACATTTTGAAGAGATGGACAAAGTCTGCAAAATCTGAGCAATATTCACATGTAATTGATAACGTTGTCTTGAGTGAAGAAGCAAGTCAATTGTTTCAGGAAACAATGGATTCTTTGATTGAGAAGATTAAGCCACTACTTGCTAATAGCAGCAGTGATGGTGTGGAGCCTCTTTCAAAAAGAAGTTCAACTCAAGAAAGTACTTTTCGTGAACCGGATGAAGTTAAGACAAAAGGAAGGGCAAAAAGAATTAAGAGAGGAAAAGAGAAGAGCAAAGGAAAGTGCAATGGTACGGGTATACATTGTCATGGATGTGGCAAAGACGGGCAGACTCATGACAAACGCAATTGTCCAGTGTTGCTCAAAAAATTTCCTGATGCTGATACAAATGAAAATTCTAGTGGAGATTGTACTGATGATAGTTATTCTTCACAGGACGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE SWIM

Protein Analysis

307

Amino Acids

35.5

Weight (kDa)

8.4

Isoelectric Point (pI)

54.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SWIM PF04434 119 - 145 9.5e-07 SWIM zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000164)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02320 FvH4_1g21472 FvH4_2g00813 FvH4_2g02512 FvH4_2g03921 FvH4_2g23460 FvH4_3g29141 FvH4_4g05791 FvH4_4g06321 FvH4_4g15595 FvH4_4g18162 FvH4_4g18163 FvH4_4g29541 FvH4_4g29541 FvH4_4g29541 FvH4_4g29541 FvH4_4g29541 FvH4_5g31093 FvH4_6g01982 FvH4_6g21931 FvH4_6g44691 FvH4_6g48541
prunus_persica Prupe.1G074100_v2.0.a1 Prupe.3G021400_v2.0.a1
pyrus_communis pycom02g18570 pycom14g00670
rosa_chinensis RchiOBHm_Chr1g0379201 RchiOBHm_Chr1g0379361 RchiOBHm_Chr4g0405981 RchiOBHm_Chr5g0073641 RchiOBHm_Chr5g0073651 RchiOBHm_Chr7g0236661
rosa_multiflora Rmu_co8179562.1_g000001 Rmu_co8343647.1_g000001 Rmu_sc0000041.1_g000017 Rmu_sc0000114.1_g000020 Rmu_sc0000286.1_g000006 Rmu_sc0000308.1_g000038 Rmu_sc0000365.1_g000061 Rmu_sc0000365.1_g000062 Rmu_sc0000538.1_g000060 Rmu_sc0000538.1_g000061 Rmu_sc0000586.1_g000016 Rmu_sc0000898.1_g000007 Rmu_sc0000913.1_g000003 Rmu_sc0000913.1_g000004 Rmu_sc0000996.1_g000006 Rmu_sc0000996.1_g000007 Rmu_sc0000998.1_g000003 Rmu_sc0001350.1_g000009 Rmu_sc0002079.1_g000009 Rmu_sc0002200.1_g000013 Rmu_sc0002226.1_g000025 Rmu_sc0002279.1_g000014 Rmu_sc0002478.1_g000014 Rmu_sc0002717.1_g000004 Rmu_sc0002868.1_g000027 Rmu_sc0002889.1_g000043 Rmu_sc0003023.1_g000001 Rmu_sc0003110.1_g000006 Rmu_sc0003226.1_g000028 Rmu_sc0003226.1_g000029 Rmu_sc0003337.1_g000053 Rmu_sc0003558.1_g000007 Rmu_sc0004345.1_g000014 Rmu_sc0004383.1_g000007 Rmu_sc0004888.1_g000021 Rmu_sc0005114.1_g000012 Rmu_sc0005223.1_g000019 Rmu_sc0005223.1_g000020 Rmu_sc0005639.1_g000025 Rmu_sc0005685.1_g000027 Rmu_sc0005992.1_g000002 Rmu_sc0006326.1_g000034 Rmu_sc0006326.1_g000035 Rmu_sc0007390.1_g000012 Rmu_sc0007451.1_g000006 Rmu_sc0007825.1_g000003 Rmu_sc0008600.1_g000023 Rmu_sc0009291.1_g000003 Rmu_sc0012046.1_g000001 Rmu_sc0012046.1_g000002 Rmu_sc0012710.1_g000001 Rmu_sc0015238.1_g000001 Rmu_sc0016125.1_g000003 Rmu_sc0016175.1_g000001 Rmu_sc0016898.1_g000001 Rmu_sc0017323.1_g000010 Rmu_sc0017874.1_g000002 Rmu_sc0019167.1_g000001 Rmu_sc0020815.1_g000006 Rmu_sc0025564.1_g000001 Rmu_sc0026418.1_g000001 Rmu_sc0035188.1_g000002 Rmu_sc0039254.1_g000001 Rmu_ssc0000120.1_g000015 Rmu_ssc0000120.1_g000016 Rmu_ssc0000330.1_g000023 Rmu_ssc0000433.1_g000004
rosa_roxburghii Rroxscaffold_1G00047130 Rroxscaffold_1G00051320 Rroxscaffold_1G00056600 Rroxscaffold_2G00109650 Rroxscaffold_2G00119980 Rroxscaffold_3G00222550 Rroxscaffold_3G00224980 Rroxscaffold_3G00251020 Rroxscaffold_6G00411190 Rroxscaffold_7G00166520 Rroxscaffold_7G00172920 Rroxscaffold_7G00191860 Rroxscaffold_7G00194430
rosa_rugosa Rorug01G0198900 Rorug01G0217300 Rorug01G0244500 Rorug02G0147400 Rorug02G0152200 Rorug02G0595500 Rorug02G0595600 Rorug03G0060500 Rorug03G0203000 Rorug03G0285800 Rorug04G0027200 Rorug04G0027300 Rorug04G0225800 Rorug05G0073400 Rorug05G0213300 Rorug05G0324600 Rorug05G0390900 Rorug05G0391000 Rorug05G0391100 Rorug05G0391200 Rorug05G0462900 Rorug05G0473000 Rorug06G0256500 Rorug07G0199000 Rorug07G0208800 Rorug07G0208800 Rorug07G0316600 Rorug07G0316700
rosa_samantha Rh2BG532400 Rh2CG581900 Rh3CG322600 Rh6AG079900 Rh6AG250800 Rh6AG496300 Rh6BG506100 Rh6CG126000 Rh6CG511700 Rh6DG109400 Rh6DG112700 Rh7CG104500 Rh7CG322000 Rh7CG431500
rosa_wichuraiana Rw0G020410 Rw1G009190 Rw1G014580 Rw1G021000 Rw1G022190 Rw2G025900 Rw2G029920 Rw2G037530 Rw3G018560 Rw3G020560 Rw4G008500 Rw4G022520 Rw5G019030 Rw5G031180 Rw5G044830 Rw6G005010 Rw6G006890 Rw6G011330 Rw6G011380 Rw6G023900 Rw7G028490 Rw7G030170 Rw7G030370 Rw7G032030 Rw7G032040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 228
AatII GACGTC 1 cut(s) 150
AccI GTMKAC 2 cut(s) 421, 775
AccII CGCG 1 cut(s) 316
AclI AACGTT 1 cut(s) 540
AclWI GGATC 1 cut(s) 330
AcsI RAATTY 4 cut(s) 64, 230, 845, 871
AcyI GRCGYC 1 cut(s) 147
AfaI GTAC 6 cut(s) 221, 385, 479, 679, 769, 889
AflII CTTAAG 1 cut(s) 305
AflIII ACRYGT 3 cut(s) 314, 424, 526
AgsI TTSAA 5 cut(s) 94, 236, 487, 654, 666
AjiI CACGTC 1 cut(s) 119
AluBI AGCT 3 cut(s) 20, 255, 341
AluI AGCT 3 cut(s) 20, 255, 341
Alw21I GWGCWC 2 cut(s) 31, 343
Alw44I GTGCAC 1 cut(s) 27
AlwI GGATC 1 cut(s) 330
Ama87I CYCGRG 1 cut(s) 342
ApaLI GTGCAC 1 cut(s) 27
ApeKI GCWGC 2 cut(s) 9, 627
ApoI RAATTY 4 cut(s) 64, 230, 845, 871
AvaI CYCGRG 1 cut(s) 342
BaeGI GKGCMC 1 cut(s) 31
BanII GRGCYC 1 cut(s) 343
Bbv12I GWGCWC 2 cut(s) 31, 343
BbvI GCAGC 2 cut(s) 21, 639
BccI CCATC 4 cut(s) 178, 326, 486, 629
BfaI CTAG 2 cut(s) 162, 876
BfrI CTTAAG 1 cut(s) 305
BisI GCNGC 2 cut(s) 10, 628
BlsI GCNGC 2 cut(s) 11, 629
BmcAI AGTACT 2 cut(s) 221, 679
BmeT110I CYCGRG 1 cut(s) 342
BmgBI CACGTC 1 cut(s) 119
BmiI GGNNCC 1 cut(s) 645
BmsI GCATC 1 cut(s) 844
BpuEI CTTGAG 2 cut(s) 568, 654
BsaHI GRCGYC 1 cut(s) 147
BsaWI WCCGGW 1 cut(s) 691
Bse1I ACTGG 1 cut(s) 830
Bse3DI GCAATG 1 cut(s) 769
BseGI GGATG 3 cut(s) 292, 700, 794
BseMI GCAATG 1 cut(s) 769
BseMII CTCAG 1 cut(s) 504
BseNI ACTGG 1 cut(s) 830
BseRI GAGGAG 1 cut(s) 137
BseSI GKGCMC 1 cut(s) 31
BseXI GCAGC 2 cut(s) 21, 639
BsgI GTGCAG 1 cut(s) 426
Bsh1236I CGCG 1 cut(s) 316
BsiHKAI GWGCWC 2 cut(s) 31, 343
BsiHKCI CYCGRG 1 cut(s) 342
BsiSI CCGG 1 cut(s) 692
BslFI GGGAC 1 cut(s) 159
BsmFI GGGAC 1 cut(s) 159
BsoBI CYCGRG 1 cut(s) 342
Bsp1286I GDGCHC 2 cut(s) 31, 343
Bsp143I GATC 5 cut(s) 136, 238, 278, 322, 472
BspCNI CTCAG 1 cut(s) 505
BspFNI CGCG 1 cut(s) 316
BspHI TCATGA 2 cut(s) 325, 811
BspLI GGNNCC 1 cut(s) 645
BspPI GGATC 1 cut(s) 330
BspQI GCTCTTC 2 cut(s) 331, 740
BspTI CTTAAG 1 cut(s) 305
BsrDI GCAATG 1 cut(s) 769
BsrI ACTGG 1 cut(s) 830
BssMI GATC 5 cut(s) 136, 238, 278, 322, 472
BssNAI GTATAC 1 cut(s) 776
BssNI GRCGYC 1 cut(s) 147
Bst1107I GTATAC 1 cut(s) 776
Bst6I CTCTTC 3 cut(s) 331, 482, 740
BstACI GRCGYC 1 cut(s) 147
BstAFI CTTAAG 1 cut(s) 305
BstAPI GCANNNNNTGC 1 cut(s) 466
BstDEI CTNAG 1 cut(s) 513
BstF5I GGATG 3 cut(s) 292, 700, 794
BstFNI CGCG 1 cut(s) 316
BstKTI GATC 5 cut(s) 139, 241, 281, 325, 475
BstMBI GATC 5 cut(s) 136, 238, 278, 322, 472
BstMWI GCNNNNNNNGC 2 cut(s) 26, 466
BstNSI RCATGY 2 cut(s) 428, 530
BstSLI GKGCMC 1 cut(s) 31
BstUI CGCG 1 cut(s) 316
BstV1I GCAGC 2 cut(s) 21, 639
BstXI CCANNNNNNTGG 1 cut(s) 184
BstZ17I GTATAC 1 cut(s) 776
BtrI CACGTC 1 cut(s) 119
BtsCI GGATG 3 cut(s) 292, 700, 794
BtsI GCAGTG 1 cut(s) 637
BtsIMutI CAGTG 2 cut(s) 637, 837
CciI TCATGA 2 cut(s) 325, 811
Csp6I GTAC 6 cut(s) 220, 384, 478, 678, 768, 888
CviAII CATG 8 cut(s) 82, 326, 352, 417, 425, 527, 785, 812
CviJI RGCY 7 cut(s) 12, 20, 160, 255, 341, 610, 646
CviKI_1 RGCY 7 cut(s) 12, 20, 160, 255, 341, 610, 646
CviQI GTAC 6 cut(s) 220, 384, 478, 678, 768, 888
DdeI CTNAG 1 cut(s) 513
DpnI GATC 5 cut(s) 138, 240, 280, 324, 474
DpnII GATC 5 cut(s) 136, 238, 278, 322, 472
Eam1104I CTCTTC 3 cut(s) 331, 482, 740
EarI CTCTTC 3 cut(s) 331, 482, 740
Ecl136II GAGCTC 1 cut(s) 341
Eco24I GRGCYC 1 cut(s) 343
Eco53kI GAGCTC 1 cut(s) 341
Eco88I CYCGRG 1 cut(s) 342
EcoICRI GAGCTC 1 cut(s) 341
EcoT38I GRGCYC 1 cut(s) 343
FaeI CATG 8 cut(s) 85, 329, 355, 420, 428, 530, 788, 815
FaqI GGGAC 1 cut(s) 159
FatI CATG 8 cut(s) 81, 325, 351, 416, 424, 526, 784, 811
FblI GTMKAC 2 cut(s) 421, 775
Fnu4HI GCNGC 2 cut(s) 10, 628
FokI GGATG 3 cut(s) 299, 707, 801
FriOI GRGCYC 1 cut(s) 343
Fsp4HI GCNGC 2 cut(s) 10, 628
FspBI CTAG 2 cut(s) 162, 876
GluI GCNGC 2 cut(s) 10, 628
HapII CCGG 1 cut(s) 692
Hin1I GRCGYC 1 cut(s) 147
Hin1II CATG 8 cut(s) 85, 329, 355, 420, 428, 530, 788, 815
HincII GTYRAC 1 cut(s) 151
HindII GTYRAC 1 cut(s) 151
HinfI GANTC 2 cut(s) 587, 808
HpaII CCGG 1 cut(s) 692
Hpy166II GTNNAC 6 cut(s) 29, 151, 384, 422, 689, 776
Hpy188I TCNGA 5 cut(s) 58, 202, 278, 283, 514
Hpy188III TCNNGA 9 cut(s) 236, 269, 326, 547, 575, 671, 686, 812, 851
Hpy8I GTNNAC 6 cut(s) 29, 151, 384, 422, 689, 776
Hpy99I CGWCG 1 cut(s) 120
HpyAV CCTTC 1 cut(s) 708
HpyCH4IV ACGT 3 cut(s) 118, 147, 540
HpyCH4V TGCA 9 cut(s) 29, 134, 300, 390, 407, 442, 460, 506, 762
HpyF10VI GCNNNNNNNGC 2 cut(s) 26, 466
HpyF3I CTNAG 1 cut(s) 513
HpySE526I ACGT 3 cut(s) 118, 147, 540
Hsp92I GRCGYC 1 cut(s) 147
Hsp92II CATG 8 cut(s) 85, 329, 355, 420, 428, 530, 788, 815
Kzo9I GATC 5 cut(s) 136, 238, 278, 322, 472
LguI GCTCTTC 2 cut(s) 331, 740
LmnI GCTCC 1 cut(s) 643
LpnPI CCDG 7 cut(s) 393, 483, 560, 705, 843, 864, 896
Lsp1109I GCAGC 2 cut(s) 21, 639
LweI GCATC 1 cut(s) 844
MaeI CTAG 2 cut(s) 162, 876
MaeII ACGT 3 cut(s) 118, 147, 540
MaeIII GTNAC 2 cut(s) 105, 310
MalI GATC 5 cut(s) 138, 240, 280, 324, 474
MboI GATC 5 cut(s) 136, 238, 278, 322, 472
MboII GAAGA 7 cut(s) 341, 348, 499, 566, 613, 757, 897
MfeI CAATTG 2 cut(s) 566, 823
MhlI GDGCHC 2 cut(s) 31, 343
MluI ACGCGT 1 cut(s) 314
MlyI GAGTC 1 cut(s) 802
MnlI CCTC 6 cut(s) 115, 265, 277, 313, 657, 728
MseI TTAA 7 cut(s) 42, 168, 180, 306, 606, 702, 729
MslI CAYNNNNRTG 4 cut(s) 182, 330, 783, 789
MspCI CTTAAG 1 cut(s) 305
MspI CCGG 1 cut(s) 692
MunI CAATTG 2 cut(s) 566, 823
MvnI CGCG 1 cut(s) 316
MwoI GCNNNNNNNGC 2 cut(s) 26, 466
NdeII GATC 5 cut(s) 136, 238, 278, 322, 472
NlaIII CATG 8 cut(s) 85, 329, 355, 420, 428, 530, 788, 815
NlaIV GGNNCC 1 cut(s) 645
NspI RCATGY 2 cut(s) 428, 530
PagI TCATGA 2 cut(s) 325, 811
PciI ACATGT 2 cut(s) 424, 526
PciSI GCTCTTC 2 cut(s) 331, 740
PfeI GAWTC 1 cut(s) 587
PflFI GACNNNGTC 1 cut(s) 499
PkrI GCNGC 2 cut(s) 11, 629
PleI GAGTC 1 cut(s) 802
PpsI GAGTC 1 cut(s) 802
PscI ACATGT 2 cut(s) 424, 526
PsiI TTATAA 1 cut(s) 228
Psp124BI GAGCTC 1 cut(s) 343
Psp1406I AACGTT 1 cut(s) 540
PspN4I GGNNCC 1 cut(s) 645
PsyI GACNNNGTC 1 cut(s) 499
RsaI GTAC 6 cut(s) 221, 385, 479, 679, 769, 889
RsaNI GTAC 6 cut(s) 220, 384, 478, 678, 768, 888
RseI CAYNNNNRTG 4 cut(s) 182, 330, 783, 789
SacI GAGCTC 1 cut(s) 343
SapI GCTCTTC 2 cut(s) 331, 740
SaqAI TTAA 7 cut(s) 42, 168, 180, 306, 606, 702, 729
SatI GCNGC 2 cut(s) 10, 628
Sau3AI GATC 5 cut(s) 136, 238, 278, 322, 472
ScaI AGTACT 2 cut(s) 221, 679
SchI GAGTC 1 cut(s) 802
SduI GDGCHC 2 cut(s) 31, 343
SetI ASST 8 cut(s) 22, 121, 150, 257, 276, 312, 343, 543
SfaNI GCATC 1 cut(s) 844
SmiMI CAYNNNNRTG 4 cut(s) 182, 330, 783, 789
SmlI CTYRAG 3 cut(s) 305, 547, 669
SmoI CTYRAG 3 cut(s) 305, 547, 669
SspI AATATT 1 cut(s) 521
SspMI CTAG 2 cut(s) 162, 876
SstI GAGCTC 1 cut(s) 343
TaiI ACGT 3 cut(s) 121, 150, 543
TatI WGTACW 5 cut(s) 219, 383, 477, 677, 887
TfiI GAWTC 1 cut(s) 587
Tru1I TTAA 7 cut(s) 42, 168, 180, 306, 606, 702, 729
Tru9I TTAA 7 cut(s) 42, 168, 180, 306, 606, 702, 729
TscAI CASTG 2 cut(s) 637, 837
TseI GCWGC 2 cut(s) 9, 627
TspDTI ATGAA 5 cut(s) 70, 303, 342, 711, 882
TspGWI ACGGA 1 cut(s) 229
TspRI CASTG 2 cut(s) 637, 837
Tth111I GACNNNGTC 1 cut(s) 499
Vha464I CTTAAG 1 cut(s) 305
VneI GTGCAC 1 cut(s) 27
XapI RAATTY 4 cut(s) 64, 230, 845, 871
XceI RCATGY 2 cut(s) 428, 530
XmiI GTMKAC 2 cut(s) 421, 775
XspI CTAG 2 cut(s) 162, 876
ZraI GACGTC 1 cut(s) 148
ZrmI AGTACT 2 cut(s) 221, 679
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.