Rh6CG511700

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
Physical Location & Seq
Reverse (-)
67090306 .. 67097763
7458 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG511700.1

Sequence Viewer

Length: 471 bp
ATGAGAGAAGCTCAAGAGTCCGCTCAAGAGAGAGAAAGAGAGAGCGTCGAAGAAACAAAGGGCCAGTTCTATGCTATGAGCTTATGCTCGAAAGAAACCAATGTATACCATATTCTACTAAATAGATATGGACATTACAGAGTTCTCAAAGGAATTGAAGATATGGAAGATAATAATGGGATGGTTGTACCTACGGAAATGGAGACTAATGGGATGGTTGTACATGCGGAAGTGGAAACTCAATCTATTCAAGTTATTCCTCCATCACAAGAAAATATCTCTACTTCACCTTTCTATCCTCAAAGAAGATTTGCTAGTGTTTGCTTTTTGGTTCTCAGAATTGATGTTGAAGCTGGGTCTAGAATACTATTAGAGGTTTATTCCCAGCAGCAGGTGCTAATTAGAGCTGTCTCTATTTTCCTGAAATCTATGCTTTGGGAGAACCCTGGAGAAAGAAAGGAAAATGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

156

Amino Acids

18.02

Weight (kDa)

4.98

Isoelectric Point (pI)

57.22

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000164)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02320 FvH4_1g21472 FvH4_2g00813 FvH4_2g02512 FvH4_2g03921 FvH4_2g23460 FvH4_3g29141 FvH4_4g05791 FvH4_4g06321 FvH4_4g15595 FvH4_4g18162 FvH4_4g18163 FvH4_4g29541 FvH4_4g29541 FvH4_4g29541 FvH4_4g29541 FvH4_4g29541 FvH4_5g31093 FvH4_6g01982 FvH4_6g21931 FvH4_6g44691 FvH4_6g48541
prunus_persica Prupe.1G074100_v2.0.a1 Prupe.3G021400_v2.0.a1
pyrus_communis pycom02g18570 pycom14g00670
rosa_chinensis RchiOBHm_Chr1g0379201 RchiOBHm_Chr1g0379361 RchiOBHm_Chr4g0405981 RchiOBHm_Chr5g0073641 RchiOBHm_Chr5g0073651 RchiOBHm_Chr7g0236661
rosa_multiflora Rmu_co8179562.1_g000001 Rmu_co8343647.1_g000001 Rmu_sc0000041.1_g000017 Rmu_sc0000114.1_g000020 Rmu_sc0000286.1_g000006 Rmu_sc0000308.1_g000038 Rmu_sc0000365.1_g000061 Rmu_sc0000365.1_g000062 Rmu_sc0000538.1_g000060 Rmu_sc0000538.1_g000061 Rmu_sc0000586.1_g000016 Rmu_sc0000898.1_g000007 Rmu_sc0000913.1_g000003 Rmu_sc0000913.1_g000004 Rmu_sc0000996.1_g000006 Rmu_sc0000996.1_g000007 Rmu_sc0000998.1_g000003 Rmu_sc0001350.1_g000009 Rmu_sc0002079.1_g000009 Rmu_sc0002200.1_g000013 Rmu_sc0002226.1_g000025 Rmu_sc0002279.1_g000014 Rmu_sc0002478.1_g000014 Rmu_sc0002717.1_g000004 Rmu_sc0002868.1_g000027 Rmu_sc0002889.1_g000043 Rmu_sc0003023.1_g000001 Rmu_sc0003110.1_g000006 Rmu_sc0003226.1_g000028 Rmu_sc0003226.1_g000029 Rmu_sc0003337.1_g000053 Rmu_sc0003558.1_g000007 Rmu_sc0004345.1_g000014 Rmu_sc0004383.1_g000007 Rmu_sc0004888.1_g000021 Rmu_sc0005114.1_g000012 Rmu_sc0005223.1_g000019 Rmu_sc0005223.1_g000020 Rmu_sc0005639.1_g000025 Rmu_sc0005685.1_g000027 Rmu_sc0005992.1_g000002 Rmu_sc0006326.1_g000034 Rmu_sc0006326.1_g000035 Rmu_sc0007390.1_g000012 Rmu_sc0007451.1_g000006 Rmu_sc0007825.1_g000003 Rmu_sc0008600.1_g000023 Rmu_sc0009291.1_g000003 Rmu_sc0012046.1_g000001 Rmu_sc0012046.1_g000002 Rmu_sc0012710.1_g000001 Rmu_sc0015238.1_g000001 Rmu_sc0016125.1_g000003 Rmu_sc0016175.1_g000001 Rmu_sc0016898.1_g000001 Rmu_sc0017323.1_g000010 Rmu_sc0017874.1_g000002 Rmu_sc0019167.1_g000001 Rmu_sc0020815.1_g000006 Rmu_sc0025564.1_g000001 Rmu_sc0026418.1_g000001 Rmu_sc0035188.1_g000002 Rmu_sc0039254.1_g000001 Rmu_ssc0000120.1_g000015 Rmu_ssc0000120.1_g000016 Rmu_ssc0000330.1_g000023 Rmu_ssc0000433.1_g000004
rosa_roxburghii Rroxscaffold_1G00047130 Rroxscaffold_1G00051320 Rroxscaffold_1G00056600 Rroxscaffold_2G00109650 Rroxscaffold_2G00119980 Rroxscaffold_3G00222550 Rroxscaffold_3G00224980 Rroxscaffold_3G00251020 Rroxscaffold_6G00411190 Rroxscaffold_7G00166520 Rroxscaffold_7G00172920 Rroxscaffold_7G00191860 Rroxscaffold_7G00194430
rosa_rugosa Rorug01G0198900 Rorug01G0217300 Rorug01G0244500 Rorug02G0147400 Rorug02G0152200 Rorug02G0595500 Rorug02G0595600 Rorug03G0060500 Rorug03G0203000 Rorug03G0285800 Rorug04G0027200 Rorug04G0027300 Rorug04G0225800 Rorug05G0073400 Rorug05G0213300 Rorug05G0324600 Rorug05G0390900 Rorug05G0391000 Rorug05G0391100 Rorug05G0391200 Rorug05G0462900 Rorug05G0473000 Rorug06G0256500 Rorug07G0199000 Rorug07G0208800 Rorug07G0208800 Rorug07G0316600 Rorug07G0316700
rosa_samantha Rh2BG532400 Rh2CG581900 Rh3CG322600 Rh6AG079900 Rh6AG250800 Rh6AG496300 Rh6BG506100 Rh6CG126000 Rh6CG511700 Rh6DG109400 Rh6DG112700 Rh7CG104500 Rh7CG322000 Rh7CG431500
rosa_wichuraiana Rw0G020410 Rw1G009190 Rw1G014580 Rw1G021000 Rw1G022190 Rw2G025900 Rw2G029920 Rw2G037530 Rw3G018560 Rw3G020560 Rw4G008500 Rw4G022520 Rw5G019030 Rw5G031180 Rw5G044830 Rw6G005010 Rw6G006890 Rw6G011330 Rw6G011380 Rw6G023900 Rw7G028490 Rw7G030170 Rw7G030370 Rw7G032030 Rw7G032040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 382
Acc36I ACCTGC 1 cut(s) 382
AccBSI CCGCTC 1 cut(s) 23
AccI GTMKAC 1 cut(s) 105
AciI CCGC 2 cut(s) 21, 227
AfaI GTAC 2 cut(s) 189, 222
AfiI CCNNNNNNNGG 1 cut(s) 391
AgsI TTSAA 3 cut(s) 158, 251, 350
AjnI CCWGG 1 cut(s) 445
AluBI AGCT 4 cut(s) 11, 81, 353, 407
AluI AGCT 4 cut(s) 11, 81, 353, 407
Alw26I GTCTC 2 cut(s) 197, 415
AoxI GGCC 1 cut(s) 61
ApeKI GCWGC 1 cut(s) 388
AspS9I GGNCC 1 cut(s) 61
AsuHPI GGTGA 1 cut(s) 279
BbvI GCAGC 1 cut(s) 400
BccI CCATC 3 cut(s) 175, 208, 271
BciT130I CCWGG 1 cut(s) 447
BcoDI GTCTC 2 cut(s) 197, 415
BfaI CTAG 2 cut(s) 315, 360
BfuAI ACCTGC 1 cut(s) 382
BisI GCNGC 1 cut(s) 389
BlsI GCNGC 1 cut(s) 390
Bme1390I CCNGG 1 cut(s) 447
BmgT120I GGNCC 1 cut(s) 61
BmrFI CCNGG 1 cut(s) 447
BplI GAGNNNNNCTC 1 cut(s) 27
BpmI CTGGAG 1 cut(s) 468
BpuEI CTTGAG 1 cut(s) 9
BsaJI CCNNGG 1 cut(s) 445
Bsc4I CCNNNNNNNGG 1 cut(s) 391
Bse1I ACTGG 1 cut(s) 64
BseBI CCWGG 1 cut(s) 447
BseDI CCNNGG 1 cut(s) 445
BseGI GGATG 2 cut(s) 186, 219
BseLI CCNNNNNNNGG 1 cut(s) 391
BseMII CTCAG 1 cut(s) 349
BseNI ACTGG 1 cut(s) 64
BseXI GCAGC 1 cut(s) 400
BseYI CCCAGC 2 cut(s) 353, 384
BshFI GGCC 1 cut(s) 63
BslI CCNNNNNNNGG 1 cut(s) 391
BsmAI GTCTC 2 cut(s) 197, 415
BsnI GGCC 1 cut(s) 63
Bsp1407I TGTACA 1 cut(s) 220
BspACI CCGC 2 cut(s) 21, 227
BspANI GGCC 1 cut(s) 63
BspCNI CTCAG 1 cut(s) 348
BspMI ACCTGC 1 cut(s) 382
BsrBI CCGCTC 1 cut(s) 23
BsrGI TGTACA 1 cut(s) 220
BsrI ACTGG 1 cut(s) 64
BssECI CCNNGG 1 cut(s) 445
BssNAI GTATAC 1 cut(s) 106
Bst1107I GTATAC 1 cut(s) 106
Bst2UI CCWGG 1 cut(s) 447
BstAPI GCANNNNNTGC 1 cut(s) 394
BstAUI TGTACA 1 cut(s) 220
BstDEI CTNAG 1 cut(s) 335
BstF5I GGATG 2 cut(s) 186, 219
BstMAI GTCTC 2 cut(s) 197, 415
BstMWI GCNNNNNNNGC 1 cut(s) 394
BstNI CCWGG 1 cut(s) 447
BstNSI RCATGY 1 cut(s) 227
BstSCI CCNGG 1 cut(s) 445
BstV1I GCAGC 1 cut(s) 400
BstZ17I GTATAC 1 cut(s) 106
BsuRI GGCC 1 cut(s) 63
BtsCI GGATG 2 cut(s) 186, 219
BveI ACCTGC 1 cut(s) 382
Cfr13I GGNCC 1 cut(s) 61
CseI GACGC 1 cut(s) 34
Csp6I GTAC 2 cut(s) 188, 221
CviAII CATG 1 cut(s) 224
CviJI RGCY 5 cut(s) 11, 63, 81, 353, 407
CviKI_1 RGCY 5 cut(s) 11, 63, 81, 353, 407
CviQI GTAC 2 cut(s) 188, 221
DdeI CTNAG 1 cut(s) 335
EcoRII CCWGG 1 cut(s) 445
FaeI CATG 1 cut(s) 227
FaiI YATR 9 cut(s) 72, 77, 85, 106, 111, 129, 164, 225, 431
FatI CATG 1 cut(s) 223
FblI GTMKAC 1 cut(s) 105
Fnu4HI GCNGC 1 cut(s) 389
FokI GGATG 2 cut(s) 193, 226
Fsp4HI GCNGC 1 cut(s) 389
FspBI CTAG 2 cut(s) 315, 360
GluI GCNGC 1 cut(s) 389
GsaI CCCAGC 2 cut(s) 357, 388
GsuI CTGGAG 1 cut(s) 468
HaeIII GGCC 1 cut(s) 63
HgaI GACGC 1 cut(s) 34
Hin1II CATG 1 cut(s) 227
HinfI GANTC 1 cut(s) 17
HphI GGTGA 1 cut(s) 279
Hpy166II GTNNAC 1 cut(s) 106
Hpy188I TCNGA 1 cut(s) 338
Hpy188III TCNNGA 4 cut(s) 14, 26, 360, 421
Hpy8I GTNNAC 1 cut(s) 106
Hpy99I CGWCG 1 cut(s) 50
HpyF10VI GCNNNNNNNGC 1 cut(s) 394
HpyF3I CTNAG 1 cut(s) 335
Hsp92II CATG 1 cut(s) 227
LpnPI CCDG 7 cut(s) 77, 339, 377, 398, 432, 434, 459
Lsp1109I GCAGC 1 cut(s) 400
MaeI CTAG 2 cut(s) 315, 360
MbiI CCGCTC 1 cut(s) 23
MboII GAAGA 4 cut(s) 62, 170, 179, 318
MluCI AATT 3 cut(s) 153, 339, 399
MlyI GAGTC 1 cut(s) 26
MnlI CCTC 3 cut(s) 270, 309, 367
MspR9I CCNGG 1 cut(s) 447
MvaI CCWGG 1 cut(s) 447
MwoI GCNNNNNNNGC 1 cut(s) 394
NlaIII CATG 1 cut(s) 227
NspI RCATGY 1 cut(s) 227
PaqCI CACCTGC 1 cut(s) 382
PkrI GCNGC 1 cut(s) 390
PleI GAGTC 1 cut(s) 25
PpsI GAGTC 1 cut(s) 25
Psp6I CCWGG 1 cut(s) 445
PspFI CCCAGC 2 cut(s) 353, 384
PspGI CCWGG 1 cut(s) 445
PspPI GGNCC 1 cut(s) 61
RsaI GTAC 2 cut(s) 189, 222
RsaNI GTAC 2 cut(s) 188, 221
SatI GCNGC 1 cut(s) 389
Sau96I GGNCC 1 cut(s) 61
SchI GAGTC 1 cut(s) 26
ScrFI CCNGG 1 cut(s) 447
SetI ASST 8 cut(s) 13, 83, 193, 292, 355, 378, 396, 409
SmlI CTYRAG 2 cut(s) 12, 24
SmoI CTYRAG 2 cut(s) 12, 24
Sse9I AATT 3 cut(s) 153, 339, 399
SsiI CCGC 2 cut(s) 21, 227
SspMI CTAG 2 cut(s) 315, 360
StyD4I CCNGG 1 cut(s) 445
TaqI TCGA 2 cut(s) 48, 89
TasI AATT 3 cut(s) 153, 339, 399
TatI WGTACW 1 cut(s) 220
TseI GCWGC 1 cut(s) 388
TspGWI ACGGA 1 cut(s) 209
XbaI TCTAGA 1 cut(s) 359
XceI RCATGY 1 cut(s) 227
XmiI GTMKAC 1 cut(s) 105
XspI CTAG 2 cut(s) 315, 360
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.