Rorug04G0027200

Protein FAR1-RELATED SEQUENCE 5-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0000164
Physical Location & Seq
Forward (+)
3767182 .. 3769086
1905 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0027200.1

Sequence Viewer

Length: 981 bp
ATGCTGAATGGAAAGGGAATGGCTGGCTACATCGGAAGAACGAGTGCTCTCTGTTTGGATGGAATTGAAGATCACCTTGTTACATCACTAGGTGCAGACTTTGAAACTCAACCAGAGGTTGTGCCGTTGTTCCATGACCAGGGACCAATGGATCTCGATCTCAATGAAGAGCATTTTGAGGTGCACACTGAGCATGATCTTGTTCCACCAGCTGTGGAATCAATGGTTGCTCTTCCTGCCAATATATCTAGGATGCGCAGACCAGTGCAGTCAAGAGGACATAATCGAGCAAGGTGGGCAAGGAATGGAATACCAGAGAAGATGAATTTTAATAACCATGGCCAACCAGTAGAACCAGCGGAAATTGTGGCAAGGGACAAAAATGAAGACAAAAATGAAGAGGTCACTGATGTAGTTCGTCATAAGGTGTACTGTGAGGTTCTTGGTCTTGAAAAGAGGAATAAGGTCAGAGGCTTTGGAGCAGGAATCAATTGGTCAGATGTGCCTGATATTGTCACTGAAGAGAGGCCTATATCTAGGGAAGTTAAAGAACTAAGAGCTGCATACGAGCTTCAAGCAGAGGTTGTGAAACTTGCGCAACAAGAAGTCATTATGCTTAGGCTGGAAGCAACAGAAAGAGAAAAAAGGTGGAGTTTGGAGGCTTCAAACCTTGTTAAGAACTTGAGGAAGGAACAGGTAGAGGCAATAAACATGCAAAAAAATCATGTGGAACTGAAGATAATGGCGATCAAGCGGGGGATGATAGAGTTCATGGCTGAGTTTAAAAACTCGAAAGGCAAAGACAAGATAGAGGATGGAAGTGCAATTGCTGTGTTACAATCATTTTTGAACAAGGTTGATATTGGAACTACTGCATGTGGTCCTTCTGAAGTATCAAGAGATGAAGACTATGAGGTTGTTGAAATGGAAAGTGACAATGGCGCTCTCCCGAGCTTGCCACAGTGCAAGCCAAACAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE SWIM

Protein Analysis

326

Amino Acids

36.7

Weight (kDa)

5.24

Isoelectric Point (pI)

48.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000164)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02320 FvH4_1g21472 FvH4_2g00813 FvH4_2g02512 FvH4_2g03921 FvH4_2g23460 FvH4_3g29141 FvH4_4g05791 FvH4_4g06321 FvH4_4g15595 FvH4_4g18162 FvH4_4g18163 FvH4_4g29541 FvH4_4g29541 FvH4_4g29541 FvH4_4g29541 FvH4_4g29541 FvH4_5g31093 FvH4_6g01982 FvH4_6g21931 FvH4_6g44691 FvH4_6g48541
prunus_persica Prupe.1G074100_v2.0.a1 Prupe.3G021400_v2.0.a1
pyrus_communis pycom02g18570 pycom14g00670
rosa_chinensis RchiOBHm_Chr1g0379201 RchiOBHm_Chr1g0379361 RchiOBHm_Chr4g0405981 RchiOBHm_Chr5g0073641 RchiOBHm_Chr5g0073651 RchiOBHm_Chr7g0236661
rosa_multiflora Rmu_co8179562.1_g000001 Rmu_co8343647.1_g000001 Rmu_sc0000041.1_g000017 Rmu_sc0000114.1_g000020 Rmu_sc0000286.1_g000006 Rmu_sc0000308.1_g000038 Rmu_sc0000365.1_g000061 Rmu_sc0000365.1_g000062 Rmu_sc0000538.1_g000060 Rmu_sc0000538.1_g000061 Rmu_sc0000586.1_g000016 Rmu_sc0000898.1_g000007 Rmu_sc0000913.1_g000003 Rmu_sc0000913.1_g000004 Rmu_sc0000996.1_g000006 Rmu_sc0000996.1_g000007 Rmu_sc0000998.1_g000003 Rmu_sc0001350.1_g000009 Rmu_sc0002079.1_g000009 Rmu_sc0002200.1_g000013 Rmu_sc0002226.1_g000025 Rmu_sc0002279.1_g000014 Rmu_sc0002478.1_g000014 Rmu_sc0002717.1_g000004 Rmu_sc0002868.1_g000027 Rmu_sc0002889.1_g000043 Rmu_sc0003023.1_g000001 Rmu_sc0003110.1_g000006 Rmu_sc0003226.1_g000028 Rmu_sc0003226.1_g000029 Rmu_sc0003337.1_g000053 Rmu_sc0003558.1_g000007 Rmu_sc0004345.1_g000014 Rmu_sc0004383.1_g000007 Rmu_sc0004888.1_g000021 Rmu_sc0005114.1_g000012 Rmu_sc0005223.1_g000019 Rmu_sc0005223.1_g000020 Rmu_sc0005639.1_g000025 Rmu_sc0005685.1_g000027 Rmu_sc0005992.1_g000002 Rmu_sc0006326.1_g000034 Rmu_sc0006326.1_g000035 Rmu_sc0007390.1_g000012 Rmu_sc0007451.1_g000006 Rmu_sc0007825.1_g000003 Rmu_sc0008600.1_g000023 Rmu_sc0009291.1_g000003 Rmu_sc0012046.1_g000001 Rmu_sc0012046.1_g000002 Rmu_sc0012710.1_g000001 Rmu_sc0015238.1_g000001 Rmu_sc0016125.1_g000003 Rmu_sc0016175.1_g000001 Rmu_sc0016898.1_g000001 Rmu_sc0017323.1_g000010 Rmu_sc0017874.1_g000002 Rmu_sc0019167.1_g000001 Rmu_sc0020815.1_g000006 Rmu_sc0025564.1_g000001 Rmu_sc0026418.1_g000001 Rmu_sc0035188.1_g000002 Rmu_sc0039254.1_g000001 Rmu_ssc0000120.1_g000015 Rmu_ssc0000120.1_g000016 Rmu_ssc0000330.1_g000023 Rmu_ssc0000433.1_g000004
rosa_roxburghii Rroxscaffold_1G00047130 Rroxscaffold_1G00051320 Rroxscaffold_1G00056600 Rroxscaffold_2G00109650 Rroxscaffold_2G00119980 Rroxscaffold_3G00222550 Rroxscaffold_3G00224980 Rroxscaffold_3G00251020 Rroxscaffold_6G00411190 Rroxscaffold_7G00166520 Rroxscaffold_7G00172920 Rroxscaffold_7G00191860 Rroxscaffold_7G00194430
rosa_rugosa Rorug01G0198900 Rorug01G0217300 Rorug01G0244500 Rorug02G0147400 Rorug02G0152200 Rorug02G0595500 Rorug02G0595600 Rorug03G0060500 Rorug03G0203000 Rorug03G0285800 Rorug04G0027200 Rorug04G0027300 Rorug04G0225800 Rorug05G0073400 Rorug05G0213300 Rorug05G0324600 Rorug05G0390900 Rorug05G0391000 Rorug05G0391100 Rorug05G0391200 Rorug05G0462900 Rorug05G0473000 Rorug06G0256500 Rorug07G0199000 Rorug07G0208800 Rorug07G0208800 Rorug07G0316600 Rorug07G0316700
rosa_samantha Rh2BG532400 Rh2CG581900 Rh3CG322600 Rh6AG079900 Rh6AG250800 Rh6AG496300 Rh6BG506100 Rh6CG126000 Rh6CG511700 Rh6DG109400 Rh6DG112700 Rh7CG104500 Rh7CG322000 Rh7CG431500
rosa_wichuraiana Rw0G020410 Rw1G009190 Rw1G014580 Rw1G021000 Rw1G022190 Rw2G025900 Rw2G029920 Rw2G037530 Rw3G018560 Rw3G020560 Rw4G008500 Rw4G022520 Rw5G019030 Rw5G031180 Rw5G044830 Rw6G005010 Rw6G006890 Rw6G011330 Rw6G011380 Rw6G023900 Rw7G028490 Rw7G030170 Rw7G030370 Rw7G032030 Rw7G032040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 2 cut(s) 257, 597
AciI CCGC 2 cut(s) 359, 754
AclWI GGATC 1 cut(s) 159
AcoI YGGCCR 1 cut(s) 340
AcsI RAATTY 1 cut(s) 325
AcuI CTGAAG 3 cut(s) 540, 755, 909
AdeI CACNNNGTG 1 cut(s) 92
AfaI GTAC 1 cut(s) 431
AfiI CCNNNNNNNGG 1 cut(s) 139
AgsI TTSAA 7 cut(s) 68, 104, 452, 575, 666, 850, 923
AjnI CCWGG 1 cut(s) 138
AluBI AGCT 4 cut(s) 212, 560, 571, 954
AluI AGCT 4 cut(s) 212, 560, 571, 954
Alw21I GWGCWC 2 cut(s) 49, 186
Alw44I GTGCAC 1 cut(s) 182
AlwI GGATC 1 cut(s) 159
Ama87I CYCGRG 1 cut(s) 949
AoxI GGCC 2 cut(s) 340, 527
ApaLI GTGCAC 1 cut(s) 182
ApeKI GCWGC 1 cut(s) 560
ApoI RAATTY 1 cut(s) 325
AspLEI GCGC 3 cut(s) 258, 598, 944
AspS9I GGNCC 2 cut(s) 143, 881
AsuHPI GGTGA 1 cut(s) 65
AvaI CYCGRG 1 cut(s) 949
AvaII GGWCC 2 cut(s) 143, 881
BaeGI GKGCMC 1 cut(s) 186
BalI TGGCCA 1 cut(s) 342
BbsI GAAGAC 2 cut(s) 393, 912
Bbv12I GWGCWC 2 cut(s) 49, 186
BbvI GCAGC 1 cut(s) 547
BccI CCATC 2 cut(s) 53, 809
BceAI ACGGC 1 cut(s) 109
BciT130I CCWGG 1 cut(s) 140
BfaI CTAG 3 cut(s) 89, 249, 537
BfoI RGCGCY 1 cut(s) 945
BisI GCNGC 1 cut(s) 561
BlsI GCNGC 1 cut(s) 562
Bme1390I CCNGG 1 cut(s) 140
Bme18I GGWCC 2 cut(s) 143, 881
BmeT110I CYCGRG 1 cut(s) 949
BmgT120I GGNCC 2 cut(s) 143, 881
BmiI GGNNCC 1 cut(s) 144
BmrFI CCNGG 1 cut(s) 140
BmsI GCATC 1 cut(s) 243
BpiI GAAGAC 2 cut(s) 393, 912
Bpu10I CCTNAGC 1 cut(s) 617
BpuEI CTTGAG 1 cut(s) 703
BsaBI GATNNNNATC 1 cut(s) 156
BsaJI CCNNGG 2 cut(s) 139, 337
Bsc4I CCNNNNNNNGG 1 cut(s) 139
Bse1I ACTGG 2 cut(s) 263, 347
Bse8I GATNNNNATC 1 cut(s) 156
BseBI CCWGG 1 cut(s) 140
BseDI CCNNGG 2 cut(s) 139, 337
BseGI GGATG 4 cut(s) 64, 258, 765, 820
BseJI GATNNNNATC 1 cut(s) 156
BseLI CCNNNNNNNGG 1 cut(s) 139
BseMII CTCAG 2 cut(s) 180, 768
BseNI ACTGG 2 cut(s) 263, 347
BseSI GKGCMC 1 cut(s) 186
BseXI GCAGC 1 cut(s) 547
BsgI GTGCAG 2 cut(s) 114, 287
BshFI GGCC 2 cut(s) 342, 529
BsiHKAI GWGCWC 2 cut(s) 49, 186
BsiHKCI CYCGRG 1 cut(s) 949
BslFI GGGAC 2 cut(s) 156, 389
BslI CCNNNNNNNGG 1 cut(s) 139
BsmFI GGGAC 2 cut(s) 156, 389
BsnI GGCC 2 cut(s) 342, 529
BsoBI CYCGRG 1 cut(s) 949
Bsp1286I GDGCHC 2 cut(s) 49, 186
Bsp143I GATC 5 cut(s) 70, 151, 157, 196, 747
Bsp19I CCATGG 1 cut(s) 337
BspACI CCGC 2 cut(s) 359, 754
BspANI GGCC 2 cut(s) 342, 529
BspCNI CTCAG 2 cut(s) 181, 769
BspLI GGNNCC 1 cut(s) 144
BspPI GGATC 1 cut(s) 159
BspQI GCTCTTC 2 cut(s) 162, 237
BsrI ACTGG 2 cut(s) 263, 347
BssECI CCNNGG 2 cut(s) 139, 337
BssMI GATC 5 cut(s) 70, 151, 157, 196, 747
BssT1I CCWWGG 1 cut(s) 337
Bst2UI CCWGG 1 cut(s) 140
Bst4CI ACNGT 2 cut(s) 434, 963
Bst6I CTCTTC 4 cut(s) 162, 237, 393, 516
BstC8I GCNNGC 3 cut(s) 25, 956, 968
BstDEI CTNAG 4 cut(s) 189, 554, 617, 777
BstDSI CCRYGG 1 cut(s) 337
BstF5I GGATG 4 cut(s) 64, 258, 765, 820
BstH2I RGCGCY 1 cut(s) 945
BstHHI GCGC 3 cut(s) 258, 598, 944
BstKTI GATC 5 cut(s) 73, 154, 160, 199, 750
BstMBI GATC 5 cut(s) 70, 151, 157, 196, 747
BstMWI GCNNNNNNNGC 3 cut(s) 190, 236, 296
BstNI CCWGG 1 cut(s) 140
BstNSI RCATGY 2 cut(s) 715, 879
BstSCI CCNGG 1 cut(s) 138
BstSLI GKGCMC 1 cut(s) 186
BstV1I GCAGC 1 cut(s) 547
BstV2I GAAGAC 2 cut(s) 393, 912
BstX2I RGATCY 1 cut(s) 151
BstYI RGATCY 1 cut(s) 151
BsuRI GGCC 2 cut(s) 342, 529
BtgI CCRYGG 1 cut(s) 337
BtsCI GGATG 4 cut(s) 64, 258, 765, 820
BtsIMutI CAGTG 5 cut(s) 186, 270, 405, 516, 968
Cac8I GCNNGC 3 cut(s) 25, 956, 968
CfoI GCGC 3 cut(s) 258, 598, 944
Cfr13I GGNCC 2 cut(s) 143, 881
Csp6I GTAC 1 cut(s) 430
CviAII CATG 7 cut(s) 134, 194, 338, 712, 725, 772, 876
CviQI GTAC 1 cut(s) 430
DdeI CTNAG 4 cut(s) 189, 554, 617, 777
DpnI GATC 5 cut(s) 72, 153, 159, 198, 749
DpnII GATC 5 cut(s) 70, 151, 157, 196, 747
DraI TTTAAA 1 cut(s) 784
DraIII CACNNNGTG 1 cut(s) 92
EaeI YGGCCR 1 cut(s) 340
Eam1104I CTCTTC 4 cut(s) 162, 237, 393, 516
EarI CTCTTC 4 cut(s) 162, 237, 393, 516
Eco130I CCWWGG 1 cut(s) 337
Eco147I AGGCCT 1 cut(s) 529
Eco47I GGWCC 2 cut(s) 143, 881
Eco57I CTGAAG 3 cut(s) 540, 755, 909
Eco88I CYCGRG 1 cut(s) 949
EcoRII CCWGG 1 cut(s) 138
EcoT14I CCWWGG 1 cut(s) 337
ErhI CCWWGG 1 cut(s) 337
FaeI CATG 7 cut(s) 137, 197, 341, 715, 728, 775, 879
FalI AAGNNNNNCTT 2 cut(s) 60, 92
FaqI GGGAC 2 cut(s) 156, 389
FatI CATG 7 cut(s) 133, 193, 337, 711, 724, 771, 875
FauI CCCGC 1 cut(s) 747
Fnu4HI GCNGC 1 cut(s) 561
FokI GGATG 4 cut(s) 71, 265, 772, 827
Fsp4HI GCNGC 1 cut(s) 561
FspBI CTAG 3 cut(s) 89, 249, 537
FspI TGCGCA 2 cut(s) 257, 597
GlaI GCGC 3 cut(s) 257, 597, 943
GluI GCNGC 1 cut(s) 561
HaeII RGCGCY 1 cut(s) 945
HaeIII GGCC 2 cut(s) 342, 529
HhaI GCGC 3 cut(s) 258, 598, 944
Hin1II CATG 7 cut(s) 137, 197, 341, 715, 728, 775, 879
Hin6I GCGC 3 cut(s) 256, 596, 942
HinP1I GCGC 3 cut(s) 256, 596, 942
HinfI GANTC 2 cut(s) 218, 486
HphI GGTGA 1 cut(s) 65
Hpy166II GTNNAC 2 cut(s) 184, 430
Hpy188I TCNGA 4 cut(s) 35, 470, 499, 889
Hpy188III TCNNGA 5 cut(s) 155, 273, 449, 897, 949
Hpy8I GTNNAC 2 cut(s) 184, 430
HpyAV CCTTC 2 cut(s) 682, 894
HpyCH4III ACNGT 2 cut(s) 434, 963
HpyCH4V TGCA 8 cut(s) 95, 184, 268, 563, 715, 824, 875, 966
HpyF10VI GCNNNNNNNGC 3 cut(s) 190, 236, 296
HpyF3I CTNAG 4 cut(s) 189, 554, 617, 777
Hsp92II CATG 7 cut(s) 137, 197, 341, 715, 728, 775, 879
HspAI GCGC 3 cut(s) 256, 596, 942
Kzo9I GATC 5 cut(s) 70, 151, 157, 196, 747
LguI GCTCTTC 2 cut(s) 162, 237
LmnI GCTCC 1 cut(s) 479
Lsp1109I GCAGC 1 cut(s) 547
LweI GCATC 1 cut(s) 243
MaeI CTAG 3 cut(s) 89, 249, 537
MaeIII GTNAC 5 cut(s) 79, 403, 514, 834, 932
MalI GATC 5 cut(s) 72, 153, 159, 198, 749
MboI GATC 5 cut(s) 70, 151, 157, 196, 747
MfeI CAATTG 3 cut(s) 490, 825, 976
MflI RGATCY 1 cut(s) 151
MhlI GDGCHC 2 cut(s) 49, 186
MlsI TGGCCA 1 cut(s) 342
MluCI AATT 6 cut(s) 63, 325, 363, 490, 825, 976
MluNI TGGCCA 1 cut(s) 342
Mox20I TGGCCA 1 cut(s) 342
MscI TGGCCA 1 cut(s) 342
MseI TTAA 4 cut(s) 330, 546, 675, 783
Msp20I TGGCCA 1 cut(s) 342
MspA1I CMGCKG 2 cut(s) 212, 359
MspR9I CCNGG 1 cut(s) 140
MunI CAATTG 3 cut(s) 490, 825, 976
MvaI CCWGG 1 cut(s) 140
MwoI GCNNNNNNNGC 3 cut(s) 190, 236, 296
NcoI CCATGG 1 cut(s) 337
NdeII GATC 5 cut(s) 70, 151, 157, 196, 747
NlaIII CATG 7 cut(s) 137, 197, 341, 715, 728, 775, 879
NlaIV GGNNCC 1 cut(s) 144
NmuCI GTSAC 3 cut(s) 403, 514, 932
NsbI TGCGCA 2 cut(s) 257, 597
NspI RCATGY 2 cut(s) 715, 879
PceI AGGCCT 1 cut(s) 529
PciSI GCTCTTC 2 cut(s) 162, 237
PfeI GAWTC 2 cut(s) 218, 486
PkrI GCNGC 1 cut(s) 562
Psp6I CCWGG 1 cut(s) 138
PspGI CCWGG 1 cut(s) 138
PspN4I GGNNCC 1 cut(s) 144
PspPI GGNCC 2 cut(s) 143, 881
PsuI RGATCY 1 cut(s) 151
PvuII CAGCTG 1 cut(s) 212
RsaI GTAC 1 cut(s) 431
RsaNI GTAC 1 cut(s) 430
SapI GCTCTTC 2 cut(s) 162, 237
SaqAI TTAA 4 cut(s) 330, 546, 675, 783
SatI GCNGC 1 cut(s) 561
Sau3AI GATC 5 cut(s) 70, 151, 157, 196, 747
Sau96I GGNCC 2 cut(s) 143, 881
ScrFI CCNGG 1 cut(s) 140
SduI GDGCHC 2 cut(s) 49, 186
SfaNI GCATC 1 cut(s) 243
SinI GGWCC 2 cut(s) 143, 881
SmlI CTYRAG 1 cut(s) 682
SmoI CTYRAG 1 cut(s) 682
Sse9I AATT 6 cut(s) 63, 325, 363, 490, 825, 976
SseBI AGGCCT 1 cut(s) 529
SsiI CCGC 2 cut(s) 359, 754
SspMI CTAG 3 cut(s) 89, 249, 537
StuI AGGCCT 1 cut(s) 529
StyD4I CCNGG 1 cut(s) 138
StyI CCWWGG 1 cut(s) 337
TaaI ACNGT 2 cut(s) 434, 963
TaqI TCGA 3 cut(s) 156, 286, 791
TasI AATT 6 cut(s) 63, 325, 363, 490, 825, 976
TatI WGTACW 1 cut(s) 429
TfiI GAWTC 2 cut(s) 218, 486
Tru1I TTAA 4 cut(s) 330, 546, 675, 783
Tru9I TTAA 4 cut(s) 330, 546, 675, 783
TscAI CASTG 5 cut(s) 193, 270, 412, 523, 968
TseFI GTSAC 3 cut(s) 403, 514, 932
TseI GCWGC 1 cut(s) 560
Tsp45I GTSAC 3 cut(s) 403, 514, 932
TspDTI ATGAA 6 cut(s) 180, 338, 399, 411, 760, 918
TspRI CASTG 5 cut(s) 193, 270, 412, 523, 968
VneI GTGCAC 1 cut(s) 182
VpaK11BI GGWCC 2 cut(s) 143, 881
XapI RAATTY 1 cut(s) 325
XceI RCATGY 2 cut(s) 715, 879
XspI CTAG 3 cut(s) 89, 249, 537
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.