Rmu_sc0005992.1_g000002

Protein FAR1-RELATED SEQUENCE 5-like

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005992.1
Physical Location & Seq
Forward (+)
13683 .. 14521
839 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005992.1_g000002.1.cds

Sequence Viewer

Length: 615 bp
atgacagataataagatggttgtacctgcagaaatggagactaatgggattattgtacctgcggaaatggaaactgaacctattcaagctatccctccgtcagaagaaaatgtctctacttcagctttctatcctcaagtaaggaatgagcttaaacccttcaaggtaagggaggactgtaaggcgagaatgatagttgtgagagacaagtctggtggatttgtagtcaatatatttgatgaagctcacactcatcctatgacaagtccaaaaagactccacttgctgaagtccaatcgtcgacttactaaagctcagagatcattatgggaacaactatccatggtaaacatacccacacaccagcaatttgacattcttggagtgcaagcaggaggatttcagtacattggttgtacacaacaagatttgtacaatcttgaaagggataagcgtaaagagacaaaagggcatgatggagaaatgttgcatgactactttctgctggagcaagaaaaaaattccgggttctttttcacaataaaggcagatgttgaaaataggatcactcattgtttttgggctaatatacaaaactcgaatcataactcctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

204

Amino Acids

23.52

Weight (kDa)

6.24

Isoelectric Point (pI)

46.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000164)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02320 FvH4_1g21472 FvH4_2g00813 FvH4_2g02512 FvH4_2g03921 FvH4_2g23460 FvH4_3g29141 FvH4_4g05791 FvH4_4g06321 FvH4_4g15595 FvH4_4g18162 FvH4_4g18163 FvH4_4g29541 FvH4_4g29541 FvH4_4g29541 FvH4_4g29541 FvH4_4g29541 FvH4_5g31093 FvH4_6g01982 FvH4_6g21931 FvH4_6g44691 FvH4_6g48541
prunus_persica Prupe.1G074100_v2.0.a1 Prupe.3G021400_v2.0.a1
pyrus_communis pycom02g18570 pycom14g00670
rosa_chinensis RchiOBHm_Chr1g0379201 RchiOBHm_Chr1g0379361 RchiOBHm_Chr4g0405981 RchiOBHm_Chr5g0073641 RchiOBHm_Chr5g0073651 RchiOBHm_Chr7g0236661
rosa_multiflora Rmu_co8179562.1_g000001 Rmu_co8343647.1_g000001 Rmu_sc0000041.1_g000017 Rmu_sc0000114.1_g000020 Rmu_sc0000286.1_g000006 Rmu_sc0000308.1_g000038 Rmu_sc0000365.1_g000061 Rmu_sc0000365.1_g000062 Rmu_sc0000538.1_g000060 Rmu_sc0000538.1_g000061 Rmu_sc0000586.1_g000016 Rmu_sc0000898.1_g000007 Rmu_sc0000913.1_g000003 Rmu_sc0000913.1_g000004 Rmu_sc0000996.1_g000006 Rmu_sc0000996.1_g000007 Rmu_sc0000998.1_g000003 Rmu_sc0001350.1_g000009 Rmu_sc0002079.1_g000009 Rmu_sc0002200.1_g000013 Rmu_sc0002226.1_g000025 Rmu_sc0002279.1_g000014 Rmu_sc0002478.1_g000014 Rmu_sc0002717.1_g000004 Rmu_sc0002868.1_g000027 Rmu_sc0002889.1_g000043 Rmu_sc0003023.1_g000001 Rmu_sc0003110.1_g000006 Rmu_sc0003226.1_g000028 Rmu_sc0003226.1_g000029 Rmu_sc0003337.1_g000053 Rmu_sc0003558.1_g000007 Rmu_sc0004345.1_g000014 Rmu_sc0004383.1_g000007 Rmu_sc0004888.1_g000021 Rmu_sc0005114.1_g000012 Rmu_sc0005223.1_g000019 Rmu_sc0005223.1_g000020 Rmu_sc0005639.1_g000025 Rmu_sc0005685.1_g000027 Rmu_sc0005992.1_g000002 Rmu_sc0006326.1_g000034 Rmu_sc0006326.1_g000035 Rmu_sc0007390.1_g000012 Rmu_sc0007451.1_g000006 Rmu_sc0007825.1_g000003 Rmu_sc0008600.1_g000023 Rmu_sc0009291.1_g000003 Rmu_sc0012046.1_g000001 Rmu_sc0012046.1_g000002 Rmu_sc0012710.1_g000001 Rmu_sc0015238.1_g000001 Rmu_sc0016125.1_g000003 Rmu_sc0016175.1_g000001 Rmu_sc0016898.1_g000001 Rmu_sc0017323.1_g000010 Rmu_sc0017874.1_g000002 Rmu_sc0019167.1_g000001 Rmu_sc0020815.1_g000006 Rmu_sc0025564.1_g000001 Rmu_sc0026418.1_g000001 Rmu_sc0035188.1_g000002 Rmu_sc0039254.1_g000001 Rmu_ssc0000120.1_g000015 Rmu_ssc0000120.1_g000016 Rmu_ssc0000330.1_g000023 Rmu_ssc0000433.1_g000004
rosa_roxburghii Rroxscaffold_1G00047130 Rroxscaffold_1G00051320 Rroxscaffold_1G00056600 Rroxscaffold_2G00109650 Rroxscaffold_2G00119980 Rroxscaffold_3G00222550 Rroxscaffold_3G00224980 Rroxscaffold_3G00251020 Rroxscaffold_6G00411190 Rroxscaffold_7G00166520 Rroxscaffold_7G00172920 Rroxscaffold_7G00191860 Rroxscaffold_7G00194430
rosa_rugosa Rorug01G0198900 Rorug01G0217300 Rorug01G0244500 Rorug02G0147400 Rorug02G0152200 Rorug02G0595500 Rorug02G0595600 Rorug03G0060500 Rorug03G0203000 Rorug03G0285800 Rorug04G0027200 Rorug04G0027300 Rorug04G0225800 Rorug05G0073400 Rorug05G0213300 Rorug05G0324600 Rorug05G0390900 Rorug05G0391000 Rorug05G0391100 Rorug05G0391200 Rorug05G0462900 Rorug05G0473000 Rorug06G0256500 Rorug07G0199000 Rorug07G0208800 Rorug07G0208800 Rorug07G0316600 Rorug07G0316700
rosa_samantha Rh2BG532400 Rh2CG581900 Rh3CG322600 Rh6AG079900 Rh6AG250800 Rh6AG496300 Rh6BG506100 Rh6CG126000 Rh6CG511700 Rh6DG109400 Rh6DG112700 Rh7CG104500 Rh7CG322000 Rh7CG431500
rosa_wichuraiana Rw0G020410 Rw1G009190 Rw1G014580 Rw1G021000 Rw1G022190 Rw2G025900 Rw2G029920 Rw2G037530 Rw3G018560 Rw3G020560 Rw4G008500 Rw4G022520 Rw5G019030 Rw5G031180 Rw5G044830 Rw6G005010 Rw6G006890 Rw6G011330 Rw6G011380 Rw6G023900 Rw7G028490 Rw7G030170 Rw7G030370 Rw7G032030 Rw7G032040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 34, 67
AccI GTMKAC 1 cut(s) 301
AciI CCGC 1 cut(s) 62
AclWI GGATC 1 cut(s) 572
AcsI RAATTY 1 cut(s) 520
AcuI CTGAAG 2 cut(s) 105, 308
AfaI GTAC 5 cut(s) 24, 57, 407, 418, 434
AgsI TTSAA 4 cut(s) 86, 163, 443, 557
AluBI AGCT 5 cut(s) 89, 125, 151, 245, 314
AluI AGCT 5 cut(s) 89, 125, 151, 245, 314
Alw26I GTCTC 4 cut(s) 32, 118, 198, 455
AlwI GGATC 1 cut(s) 572
ApoI RAATTY 1 cut(s) 520
Asp700I GAANNNNTTC 1 cut(s) 81
AsuC2I CCSGG 1 cut(s) 526
BccI CCATC 2 cut(s) 10, 470
BcnI CCSGG 1 cut(s) 526
BcoDI GTCTC 4 cut(s) 32, 118, 198, 455
BfaI CTAG 1 cut(s) 613
BfmI CTRYAG 1 cut(s) 27
BfuAI ACCTGC 2 cut(s) 34, 67
Bme1390I CCNGG 1 cut(s) 526
BmrFI CCNGG 1 cut(s) 526
BpmI CTGGAG 1 cut(s) 527
BpuEI CTTGAG 1 cut(s) 120
BpuMI CCSGG 1 cut(s) 526
BsaJI CCNNGG 1 cut(s) 342
BseDI CCNNGG 1 cut(s) 342
BseGI GGATG 1 cut(s) 253
BseMII CTCAG 1 cut(s) 329
BsiSI CCGG 1 cut(s) 525
BsmAI GTCTC 4 cut(s) 32, 118, 198, 455
Bsp1407I TGTACA 2 cut(s) 416, 432
Bsp143I GATC 2 cut(s) 320, 564
Bsp19I CCATGG 1 cut(s) 342
BspACI CCGC 1 cut(s) 62
BspCNI CTCAG 1 cut(s) 328
BspMAI CTGCAG 1 cut(s) 31
BspMI ACCTGC 2 cut(s) 34, 67
BspPI GGATC 1 cut(s) 572
BsrGI TGTACA 2 cut(s) 416, 432
BssECI CCNNGG 1 cut(s) 342
BssMI GATC 2 cut(s) 320, 564
BssT1I CCWWGG 1 cut(s) 342
Bst4CI ACNGT 1 cut(s) 179
BstAUI TGTACA 2 cut(s) 416, 432
BstC8I GCNNGC 1 cut(s) 390
BstDEI CTNAG 1 cut(s) 315
BstDSI CCRYGG 1 cut(s) 342
BstF5I GGATG 1 cut(s) 253
BstKTI GATC 2 cut(s) 323, 567
BstMAI GTCTC 4 cut(s) 32, 118, 198, 455
BstMBI GATC 2 cut(s) 320, 564
BstSCI CCNGG 1 cut(s) 524
BstSFI CTRYAG 1 cut(s) 27
BtgI CCRYGG 1 cut(s) 342
BtsCI GGATG 1 cut(s) 253
BveI ACCTGC 2 cut(s) 34, 67
Cac8I GCNNGC 1 cut(s) 390
Csp6I GTAC 5 cut(s) 23, 56, 406, 417, 433
CspCI CAANNNNNGTGG 2 cut(s) 196, 231
CviAII CATG 3 cut(s) 343, 473, 491
CviJI RGCY 6 cut(s) 89, 125, 151, 245, 314, 584
CviKI_1 RGCY 6 cut(s) 89, 125, 151, 245, 314, 584
CviQI GTAC 5 cut(s) 23, 56, 406, 417, 433
DdeI CTNAG 1 cut(s) 315
DpnI GATC 2 cut(s) 322, 566
DpnII GATC 2 cut(s) 320, 564
Eco130I CCWWGG 1 cut(s) 342
Eco57I CTGAAG 2 cut(s) 105, 308
EcoT14I CCWWGG 1 cut(s) 342
ErhI CCWWGG 1 cut(s) 342
FaeI CATG 3 cut(s) 346, 476, 494
FaiI YATR 9 cut(s) 233, 260, 328, 344, 353, 474, 492, 590, 606
FatI CATG 3 cut(s) 342, 472, 490
FblI GTMKAC 1 cut(s) 301
FokI GGATG 1 cut(s) 240
FspBI CTAG 1 cut(s) 613
GsuI CTGGAG 1 cut(s) 527
HapII CCGG 1 cut(s) 525
Hin1II CATG 3 cut(s) 346, 476, 494
HincII GTYRAC 1 cut(s) 302
HindII GTYRAC 1 cut(s) 302
HinfI GANTC 2 cut(s) 276, 601
HpaII CCGG 1 cut(s) 525
Hpy166II GTNNAC 3 cut(s) 302, 349, 419
Hpy188I TCNGA 2 cut(s) 103, 318
Hpy188III TCNNGA 1 cut(s) 440
Hpy8I GTNNAC 3 cut(s) 302, 349, 419
Hpy99I CGWCG 1 cut(s) 303
HpyAV CCTTC 1 cut(s) 169
HpyCH4III ACNGT 1 cut(s) 179
HpyCH4V TGCA 3 cut(s) 29, 388, 490
HpyF3I CTNAG 1 cut(s) 315
Hsp92II CATG 3 cut(s) 346, 476, 494
Kzo9I GATC 2 cut(s) 320, 564
LmnI GCTCC 1 cut(s) 508
LpnPI CCDG 7 cut(s) 39, 72, 198, 377, 378, 491, 538
MaeI CTAG 1 cut(s) 613
MalI GATC 2 cut(s) 322, 566
MboI GATC 2 cut(s) 320, 564
MboII GAAGA 1 cut(s) 116
MluCI AATT 2 cut(s) 368, 520
MlyI GAGTC 1 cut(s) 270
MnlI CCTC 4 cut(s) 105, 144, 166, 389
MroXI GAANNNNTTC 1 cut(s) 81
MseI TTAA 1 cut(s) 153
MspI CCGG 1 cut(s) 525
MspR9I CCNGG 1 cut(s) 526
NciI CCSGG 1 cut(s) 526
NcoI CCATGG 1 cut(s) 342
NdeII GATC 2 cut(s) 320, 564
NlaIII CATG 3 cut(s) 346, 476, 494
PdmI GAANNNNTTC 1 cut(s) 81
PfeI GAWTC 1 cut(s) 601
PleI GAGTC 1 cut(s) 270
PpsI GAGTC 1 cut(s) 270
PstI CTGCAG 1 cut(s) 31
RsaI GTAC 5 cut(s) 24, 57, 407, 418, 434
RsaNI GTAC 5 cut(s) 23, 56, 406, 417, 433
SalI GTCGAC 1 cut(s) 300
SaqAI TTAA 1 cut(s) 153
Sau3AI GATC 2 cut(s) 320, 564
SchI GAGTC 1 cut(s) 270
ScrFI CCNGG 1 cut(s) 526
SetI ASST 9 cut(s) 28, 61, 82, 91, 127, 153, 168, 247, 316
SfcI CTRYAG 1 cut(s) 27
SmlI CTYRAG 1 cut(s) 135
SmoI CTYRAG 1 cut(s) 135
Sse9I AATT 2 cut(s) 368, 520
SsiI CCGC 1 cut(s) 62
SspMI CTAG 1 cut(s) 613
StyD4I CCNGG 1 cut(s) 524
StyI CCWWGG 1 cut(s) 342
TaaI ACNGT 1 cut(s) 179
TaqI TCGA 2 cut(s) 301, 599
TasI AATT 2 cut(s) 368, 520
TatI WGTACW 3 cut(s) 405, 416, 432
TfiI GAWTC 1 cut(s) 601
Tru1I TTAA 1 cut(s) 153
Tru9I TTAA 1 cut(s) 153
TspDTI ATGAA 1 cut(s) 255
TspGWI ACGGA 1 cut(s) 87
XapI RAATTY 1 cut(s) 520
XmiI GTMKAC 1 cut(s) 301
XmnI GAANNNNTTC 1 cut(s) 81
XspI CTAG 1 cut(s) 613
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.