Rw2G029920

Protein FAR1-RELATED SEQUENCE 5-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0000164
Physical Location & Seq
Reverse (-)
48639307 .. 48640511
1205 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G029920.1

Sequence Viewer

Length: 981 bp
ATGAACCACATTTTCTCATCTGGCATGTCAAGTAGTCAACGAGCAGAAAGTGCACAGTCCTTTTTTAAGGATTATGTTTCTCATAAAAATTCTCTAGTGGACTTCATGGTTCTGTTTAGTCAGGGTCTTTTACACAAACGGCATGAGGAATTTAAGTGCCCCATTAAGATGGAAAAGCAAGTGGCTGCTATTTATACACGGAAGTACTATTACATATTTCAAGATCAGTTGTGGGAGAGCTACAGTTACAATCTTGAGGTCACAAAGGAGGATGAAACTAATTGTATACTTAAGGTTATGCGTCAGGATCATGAGGATGGAAGAGCCCGAGTCATTATGTATGGCAAATCAAAAGATTTTGCCTCATGTAGCTGCAAATTGTTTGAGAGTGCAGGAGTCCCATGTAGACATGTTCTAGCATACTTACATAAGTTACTTCAAGTTCATAAATTGCCAGATCAATATATTTTGAAGAGATGGACAAAATCTGCAAGATCTGAGGTTGTGATGGACAAGATTGACATGGAGATAACTGTTAGGAAGTCCTTACTTGAAAAATGTGGTCTACTGTTCCAGCAATATTCACATGTAATTGATAGCGTTGTCTTAAGTGAAGAAGCAAGTCAATTGTTTCGTGAAACAATGGATTCTTTGATTGAGAAGATTAGGCCACTACTTGCCAATAATAGCAGTGAAGGTGTGGAGTCTTATGCAGAAACAAGTTCAACTCATCAGTTTGATTTTCGAGAACCAGATGAAGTTAAGACAAAAGGAAGGGCTAAAAGAATTAAGAGAGGAAAAGAGAAGGAAAATGGAAAACGCAACAGTTCCGGTAGACATTGTCATGGATGTGGCAAAGATGGGCAGACCCATGACAAACGCAATTGTCCACTGCTCAATCAATCTGCTGATGTTGATACAAATGAAAATTTTAGTGAAGATGACATTGATACTGATAGTTATTCATCACAGGATGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE SWIM

Protein Analysis

326

Amino Acids

37.71

Weight (kDa)

6.68

Isoelectric Point (pI)

50.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SWIM PF04434 117 - 140 9.5e-07 SWIM zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000164)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02320 FvH4_1g21472 FvH4_2g00813 FvH4_2g02512 FvH4_2g03921 FvH4_2g23460 FvH4_3g29141 FvH4_4g05791 FvH4_4g06321 FvH4_4g15595 FvH4_4g18162 FvH4_4g18163 FvH4_4g29541 FvH4_4g29541 FvH4_4g29541 FvH4_4g29541 FvH4_4g29541 FvH4_5g31093 FvH4_6g01982 FvH4_6g21931 FvH4_6g44691 FvH4_6g48541
prunus_persica Prupe.1G074100_v2.0.a1 Prupe.3G021400_v2.0.a1
pyrus_communis pycom02g18570 pycom14g00670
rosa_chinensis RchiOBHm_Chr1g0379201 RchiOBHm_Chr1g0379361 RchiOBHm_Chr4g0405981 RchiOBHm_Chr5g0073641 RchiOBHm_Chr5g0073651 RchiOBHm_Chr7g0236661
rosa_multiflora Rmu_co8179562.1_g000001 Rmu_co8343647.1_g000001 Rmu_sc0000041.1_g000017 Rmu_sc0000114.1_g000020 Rmu_sc0000286.1_g000006 Rmu_sc0000308.1_g000038 Rmu_sc0000365.1_g000061 Rmu_sc0000365.1_g000062 Rmu_sc0000538.1_g000060 Rmu_sc0000538.1_g000061 Rmu_sc0000586.1_g000016 Rmu_sc0000898.1_g000007 Rmu_sc0000913.1_g000003 Rmu_sc0000913.1_g000004 Rmu_sc0000996.1_g000006 Rmu_sc0000996.1_g000007 Rmu_sc0000998.1_g000003 Rmu_sc0001350.1_g000009 Rmu_sc0002079.1_g000009 Rmu_sc0002200.1_g000013 Rmu_sc0002226.1_g000025 Rmu_sc0002279.1_g000014 Rmu_sc0002478.1_g000014 Rmu_sc0002717.1_g000004 Rmu_sc0002868.1_g000027 Rmu_sc0002889.1_g000043 Rmu_sc0003023.1_g000001 Rmu_sc0003110.1_g000006 Rmu_sc0003226.1_g000028 Rmu_sc0003226.1_g000029 Rmu_sc0003337.1_g000053 Rmu_sc0003558.1_g000007 Rmu_sc0004345.1_g000014 Rmu_sc0004383.1_g000007 Rmu_sc0004888.1_g000021 Rmu_sc0005114.1_g000012 Rmu_sc0005223.1_g000019 Rmu_sc0005223.1_g000020 Rmu_sc0005639.1_g000025 Rmu_sc0005685.1_g000027 Rmu_sc0005992.1_g000002 Rmu_sc0006326.1_g000034 Rmu_sc0006326.1_g000035 Rmu_sc0007390.1_g000012 Rmu_sc0007451.1_g000006 Rmu_sc0007825.1_g000003 Rmu_sc0008600.1_g000023 Rmu_sc0009291.1_g000003 Rmu_sc0012046.1_g000001 Rmu_sc0012046.1_g000002 Rmu_sc0012710.1_g000001 Rmu_sc0015238.1_g000001 Rmu_sc0016125.1_g000003 Rmu_sc0016175.1_g000001 Rmu_sc0016898.1_g000001 Rmu_sc0017323.1_g000010 Rmu_sc0017874.1_g000002 Rmu_sc0019167.1_g000001 Rmu_sc0020815.1_g000006 Rmu_sc0025564.1_g000001 Rmu_sc0026418.1_g000001 Rmu_sc0035188.1_g000002 Rmu_sc0039254.1_g000001 Rmu_ssc0000120.1_g000015 Rmu_ssc0000120.1_g000016 Rmu_ssc0000330.1_g000023 Rmu_ssc0000433.1_g000004
rosa_roxburghii Rroxscaffold_1G00047130 Rroxscaffold_1G00051320 Rroxscaffold_1G00056600 Rroxscaffold_2G00109650 Rroxscaffold_2G00119980 Rroxscaffold_3G00222550 Rroxscaffold_3G00224980 Rroxscaffold_3G00251020 Rroxscaffold_6G00411190 Rroxscaffold_7G00166520 Rroxscaffold_7G00172920 Rroxscaffold_7G00191860 Rroxscaffold_7G00194430
rosa_rugosa Rorug01G0198900 Rorug01G0217300 Rorug01G0244500 Rorug02G0147400 Rorug02G0152200 Rorug02G0595500 Rorug02G0595600 Rorug03G0060500 Rorug03G0203000 Rorug03G0285800 Rorug04G0027200 Rorug04G0027300 Rorug04G0225800 Rorug05G0073400 Rorug05G0213300 Rorug05G0324600 Rorug05G0390900 Rorug05G0391000 Rorug05G0391100 Rorug05G0391200 Rorug05G0462900 Rorug05G0473000 Rorug06G0256500 Rorug07G0199000 Rorug07G0208800 Rorug07G0208800 Rorug07G0316600 Rorug07G0316700
rosa_samantha Rh2BG532400 Rh2CG581900 Rh3CG322600 Rh6AG079900 Rh6AG250800 Rh6AG496300 Rh6BG506100 Rh6CG126000 Rh6CG511700 Rh6DG109400 Rh6DG112700 Rh7CG104500 Rh7CG322000 Rh7CG431500
rosa_wichuraiana Rw0G020410 Rw1G009190 Rw1G014580 Rw1G021000 Rw1G022190 Rw2G025900 Rw2G029920 Rw2G037530 Rw3G018560 Rw3G020560 Rw4G008500 Rw4G022520 Rw5G019030 Rw5G031180 Rw5G044830 Rw6G005010 Rw6G006890 Rw6G011330 Rw6G011380 Rw6G023900 Rw7G028490 Rw7G030170 Rw7G030370 Rw7G032030 Rw7G032040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 4 cut(s) 286, 406, 565, 835
AclWI GGATC 1 cut(s) 315
AcsI RAATTY 3 cut(s) 88, 149, 928
AfaI GTAC 1 cut(s) 206
AflII CTTAAG 2 cut(s) 290, 607
AflIII ACRYGT 2 cut(s) 409, 586
AgsI TTSAA 5 cut(s) 221, 440, 472, 554, 726
AluBI AGCT 2 cut(s) 240, 372
AluI AGCT 2 cut(s) 240, 372
Alw21I GWGCWC 1 cut(s) 55
Alw44I GTGCAC 1 cut(s) 51
AlwI GGATC 1 cut(s) 315
Ama87I CYCGRG 1 cut(s) 327
AoxI GGCC 1 cut(s) 668
ApaLI GTGCAC 1 cut(s) 51
ApeKI GCWGC 2 cut(s) 185, 372
ApoI RAATTY 3 cut(s) 88, 149, 928
AvaI CYCGRG 1 cut(s) 327
BaeGI GKGCMC 2 cut(s) 55, 161
BanII GRGCYC 1 cut(s) 328
BarI GAAGNNNNNNTAC 2 cut(s) 194, 226
Bbv12I GWGCWC 1 cut(s) 55
BbvI GCAGC 2 cut(s) 172, 359
BccI CCATC 5 cut(s) 163, 311, 471, 502, 854
BceAI ACGGC 1 cut(s) 155
BfaI CTAG 2 cut(s) 95, 416
BfmI CTRYAG 1 cut(s) 241
BfrI CTTAAG 2 cut(s) 290, 607
BglII AGATCT 1 cut(s) 494
BisI GCNGC 2 cut(s) 186, 373
BlsI GCNGC 2 cut(s) 187, 374
BmcAI AGTACT 1 cut(s) 206
BmeT110I CYCGRG 1 cut(s) 327
BpuEI CTTGAG 1 cut(s) 275
BsaWI WCCGGW 1 cut(s) 830
BseGI GGATG 4 cut(s) 277, 322, 854, 979
BseMII CTCAG 1 cut(s) 489
BseSI GKGCMC 2 cut(s) 55, 161
BseXI GCAGC 2 cut(s) 172, 359
BsgI GTGCAG 1 cut(s) 411
BshFI GGCC 1 cut(s) 670
BsiHKAI GWGCWC 1 cut(s) 55
BsiHKCI CYCGRG 1 cut(s) 327
BsiSI CCGG 1 cut(s) 831
BslFI GGGAC 1 cut(s) 383
BsmFI GGGAC 1 cut(s) 383
BsnI GGCC 1 cut(s) 670
BsoBI CYCGRG 1 cut(s) 327
Bsp1286I GDGCHC 3 cut(s) 55, 161, 328
Bsp143I GATC 4 cut(s) 223, 307, 457, 494
BspANI GGCC 1 cut(s) 670
BspCNI CTCAG 1 cut(s) 490
BspHI TCATGA 1 cut(s) 310
BspPI GGATC 1 cut(s) 315
BspQI GCTCTTC 1 cut(s) 316
BspTI CTTAAG 2 cut(s) 290, 607
BssMI GATC 4 cut(s) 223, 307, 457, 494
BssNAI GTATAC 1 cut(s) 287
Bst1107I GTATAC 1 cut(s) 287
Bst4CI ACNGT 5 cut(s) 57, 245, 535, 570, 827
Bst6I CTCTTC 2 cut(s) 316, 467
BstAFI CTTAAG 2 cut(s) 290, 607
BstAPI GCANNNNNTGC 1 cut(s) 50
BstDEI CTNAG 1 cut(s) 498
BstF5I GGATG 4 cut(s) 277, 322, 854, 979
BstKTI GATC 4 cut(s) 226, 310, 460, 497
BstMBI GATC 4 cut(s) 223, 307, 457, 494
BstMWI GCNNNNNNNGC 1 cut(s) 50
BstNSI RCATGY 3 cut(s) 28, 413, 590
BstSFI CTRYAG 1 cut(s) 241
BstSLI GKGCMC 2 cut(s) 55, 161
BstV1I GCAGC 2 cut(s) 172, 359
BstX2I RGATCY 1 cut(s) 494
BstXI CCANNNNNNTGG 1 cut(s) 169
BstYI RGATCY 1 cut(s) 494
BstZ17I GTATAC 1 cut(s) 287
BsuRI GGCC 1 cut(s) 670
BtsCI GGATG 4 cut(s) 277, 322, 854, 979
BtsI GCAGTG 2 cut(s) 697, 890
BtsIMutI CAGTG 2 cut(s) 697, 890
CciI TCATGA 1 cut(s) 310
CseI GACGC 1 cut(s) 290
Csp6I GTAC 1 cut(s) 205
CviJI RGCY 6 cut(s) 185, 240, 326, 372, 670, 779
CviKI_1 RGCY 6 cut(s) 185, 240, 326, 372, 670, 779
CviQI GTAC 1 cut(s) 205
DdeI CTNAG 1 cut(s) 498
DpnI GATC 4 cut(s) 225, 309, 459, 496
DpnII GATC 4 cut(s) 223, 307, 457, 494
Eam1104I CTCTTC 2 cut(s) 316, 467
EarI CTCTTC 2 cut(s) 316, 467
Eco24I GRGCYC 1 cut(s) 328
Eco88I CYCGRG 1 cut(s) 327
EcoT38I GRGCYC 1 cut(s) 328
FaqI GGGAC 1 cut(s) 383
FblI GTMKAC 4 cut(s) 286, 406, 565, 835
Fnu4HI GCNGC 2 cut(s) 186, 373
FokI GGATG 3 cut(s) 284, 329, 861
FriOI GRGCYC 1 cut(s) 328
Fsp4HI GCNGC 2 cut(s) 186, 373
FspBI CTAG 2 cut(s) 95, 416
GluI GCNGC 2 cut(s) 186, 373
HaeIII GGCC 1 cut(s) 670
HapII CCGG 1 cut(s) 831
HgaI GACGC 1 cut(s) 290
HincII GTYRAC 1 cut(s) 38
HindII GTYRAC 1 cut(s) 38
HinfI GANTC 4 cut(s) 330, 396, 647, 704
HpaII CCGG 1 cut(s) 831
Hpy166II GTNNAC 8 cut(s) 38, 53, 100, 287, 407, 566, 836, 890
Hpy188I TCNGA 1 cut(s) 499
Hpy188III TCNNGA 6 cut(s) 221, 254, 305, 311, 635, 746
Hpy8I GTNNAC 8 cut(s) 38, 53, 100, 287, 407, 566, 836, 890
HpyAV CCTTC 3 cut(s) 689, 768, 799
HpyCH4III ACNGT 5 cut(s) 57, 245, 535, 570, 827
HpyCH4V TGCA 5 cut(s) 53, 375, 392, 491, 713
HpyF10VI GCNNNNNNNGC 1 cut(s) 50
HpyF3I CTNAG 1 cut(s) 498
Kzo9I GATC 4 cut(s) 223, 307, 457, 494
LguI GCTCTTC 1 cut(s) 316
LpnPI CCDG 9 cut(s) 6, 107, 290, 378, 468, 587, 765, 844, 956
Lsp1109I GCAGC 2 cut(s) 172, 359
MaeI CTAG 2 cut(s) 95, 416
MaeIII GTNAC 3 cut(s) 245, 259, 432
MalI GATC 4 cut(s) 225, 309, 459, 496
MboI GATC 4 cut(s) 223, 307, 457, 494
MboII GAAGA 5 cut(s) 333, 484, 626, 673, 950
MfeI CAATTG 2 cut(s) 626, 883
MflI RGATCY 1 cut(s) 494
MhlI GDGCHC 3 cut(s) 55, 161, 328
MlyI GAGTC 3 cut(s) 339, 405, 713
MnlI CCTC 7 cut(s) 139, 250, 262, 307, 373, 493, 788
MseI TTAA 7 cut(s) 66, 153, 165, 291, 608, 762, 789
MslI CAYNNNNRTG 4 cut(s) 167, 315, 843, 849
MspCI CTTAAG 2 cut(s) 290, 607
MspI CCGG 1 cut(s) 831
MunI CAATTG 2 cut(s) 626, 883
MwoI GCNNNNNNNGC 1 cut(s) 50
NdeII GATC 4 cut(s) 223, 307, 457, 494
NmuCI GTSAC 1 cut(s) 259
NspI RCATGY 3 cut(s) 28, 413, 590
PagI TCATGA 1 cut(s) 310
PciI ACATGT 2 cut(s) 409, 586
PciSI GCTCTTC 1 cut(s) 316
PfeI GAWTC 1 cut(s) 647
PflFI GACNNNGTC 1 cut(s) 840
PkrI GCNGC 2 cut(s) 187, 374
PleI GAGTC 3 cut(s) 338, 404, 712
PpsI GAGTC 3 cut(s) 338, 404, 712
PscI ACATGT 2 cut(s) 409, 586
PsuI RGATCY 1 cut(s) 494
PsyI GACNNNGTC 1 cut(s) 840
RsaI GTAC 1 cut(s) 206
RsaNI GTAC 1 cut(s) 205
RseI CAYNNNNRTG 4 cut(s) 167, 315, 843, 849
SapI GCTCTTC 1 cut(s) 316
SaqAI TTAA 7 cut(s) 66, 153, 165, 291, 608, 762, 789
SatI GCNGC 2 cut(s) 186, 373
Sau3AI GATC 4 cut(s) 223, 307, 457, 494
ScaI AGTACT 1 cut(s) 206
SchI GAGTC 3 cut(s) 339, 405, 713
SduI GDGCHC 3 cut(s) 55, 161, 328
SetI ASST 6 cut(s) 242, 261, 297, 374, 504, 700
SfcI CTRYAG 1 cut(s) 241
SmiMI CAYNNNNRTG 4 cut(s) 167, 315, 843, 849
SmlI CTYRAG 3 cut(s) 254, 290, 607
SmoI CTYRAG 3 cut(s) 254, 290, 607
SspI AATATT 1 cut(s) 581
SspMI CTAG 2 cut(s) 95, 416
TaaI ACNGT 5 cut(s) 57, 245, 535, 570, 827
TaqI TCGA 1 cut(s) 745
TatI WGTACW 1 cut(s) 204
TfiI GAWTC 1 cut(s) 647
Tru1I TTAA 7 cut(s) 66, 153, 165, 291, 608, 762, 789
Tru9I TTAA 7 cut(s) 66, 153, 165, 291, 608, 762, 789
TscAI CASTG 2 cut(s) 697, 897
TseFI GTSAC 1 cut(s) 259
TseI GCWGC 2 cut(s) 185, 372
Tsp45I GTSAC 1 cut(s) 259
TspDTI ATGAA 7 cut(s) 17, 94, 288, 434, 771, 939, 954
TspGWI ACGGA 1 cut(s) 214
TspRI CASTG 2 cut(s) 697, 897
Tth111I GACNNNGTC 1 cut(s) 840
Vha464I CTTAAG 2 cut(s) 290, 607
VneI GTGCAC 1 cut(s) 51
XapI RAATTY 3 cut(s) 88, 149, 928
XceI RCATGY 3 cut(s) 28, 413, 590
XmiI GTMKAC 4 cut(s) 286, 406, 565, 835
XspI CTAG 2 cut(s) 95, 416
ZrmI AGTACT 1 cut(s) 206
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.