Rroxscaffold_2G00109650

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0000164
Physical Location & Seq
Reverse (-)
33812859 .. 33813252
394 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00109650.1

Sequence Viewer

Length: 234 bp
ATGGAATGCAGTTCCCAAGTCCAGAGACCATTAAATGCGGACGGCGAAGCTGCAACTCAGCTCGAGGGGCGACAAAGCGGCGGGGGTTGCCGGAAGGACGCCAGGGGTCGGGCGGAGAGATCTGCAGTCGGTGGAGTCGCCGGCGACGTCATTGCAGCGCTGCCCAGAAAACGTGCAGTTGCAGGTCAGGTTGCTACCCGAACTTGCAACCCCGACCTCGAACGCTGCCCGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

77

Amino Acids

7.98

Weight (kDa)

8.93

Isoelectric Point (pI)

41.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000164)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02320 FvH4_1g21472 FvH4_2g00813 FvH4_2g02512 FvH4_2g03921 FvH4_2g23460 FvH4_3g29141 FvH4_4g05791 FvH4_4g06321 FvH4_4g15595 FvH4_4g18162 FvH4_4g18163 FvH4_4g29541 FvH4_4g29541 FvH4_4g29541 FvH4_4g29541 FvH4_4g29541 FvH4_5g31093 FvH4_6g01982 FvH4_6g21931 FvH4_6g44691 FvH4_6g48541
prunus_persica Prupe.1G074100_v2.0.a1 Prupe.3G021400_v2.0.a1
pyrus_communis pycom02g18570 pycom14g00670
rosa_chinensis RchiOBHm_Chr1g0379201 RchiOBHm_Chr1g0379361 RchiOBHm_Chr4g0405981 RchiOBHm_Chr5g0073641 RchiOBHm_Chr5g0073651 RchiOBHm_Chr7g0236661
rosa_multiflora Rmu_co8179562.1_g000001 Rmu_co8343647.1_g000001 Rmu_sc0000041.1_g000017 Rmu_sc0000114.1_g000020 Rmu_sc0000286.1_g000006 Rmu_sc0000308.1_g000038 Rmu_sc0000365.1_g000061 Rmu_sc0000365.1_g000062 Rmu_sc0000538.1_g000060 Rmu_sc0000538.1_g000061 Rmu_sc0000586.1_g000016 Rmu_sc0000898.1_g000007 Rmu_sc0000913.1_g000003 Rmu_sc0000913.1_g000004 Rmu_sc0000996.1_g000006 Rmu_sc0000996.1_g000007 Rmu_sc0000998.1_g000003 Rmu_sc0001350.1_g000009 Rmu_sc0002079.1_g000009 Rmu_sc0002200.1_g000013 Rmu_sc0002226.1_g000025 Rmu_sc0002279.1_g000014 Rmu_sc0002478.1_g000014 Rmu_sc0002717.1_g000004 Rmu_sc0002868.1_g000027 Rmu_sc0002889.1_g000043 Rmu_sc0003023.1_g000001 Rmu_sc0003110.1_g000006 Rmu_sc0003226.1_g000028 Rmu_sc0003226.1_g000029 Rmu_sc0003337.1_g000053 Rmu_sc0003558.1_g000007 Rmu_sc0004345.1_g000014 Rmu_sc0004383.1_g000007 Rmu_sc0004888.1_g000021 Rmu_sc0005114.1_g000012 Rmu_sc0005223.1_g000019 Rmu_sc0005223.1_g000020 Rmu_sc0005639.1_g000025 Rmu_sc0005685.1_g000027 Rmu_sc0005992.1_g000002 Rmu_sc0006326.1_g000034 Rmu_sc0006326.1_g000035 Rmu_sc0007390.1_g000012 Rmu_sc0007451.1_g000006 Rmu_sc0007825.1_g000003 Rmu_sc0008600.1_g000023 Rmu_sc0009291.1_g000003 Rmu_sc0012046.1_g000001 Rmu_sc0012046.1_g000002 Rmu_sc0012710.1_g000001 Rmu_sc0015238.1_g000001 Rmu_sc0016125.1_g000003 Rmu_sc0016175.1_g000001 Rmu_sc0016898.1_g000001 Rmu_sc0017323.1_g000010 Rmu_sc0017874.1_g000002 Rmu_sc0019167.1_g000001 Rmu_sc0020815.1_g000006 Rmu_sc0025564.1_g000001 Rmu_sc0026418.1_g000001 Rmu_sc0035188.1_g000002 Rmu_sc0039254.1_g000001 Rmu_ssc0000120.1_g000015 Rmu_ssc0000120.1_g000016 Rmu_ssc0000330.1_g000023 Rmu_ssc0000433.1_g000004
rosa_roxburghii Rroxscaffold_1G00047130 Rroxscaffold_1G00051320 Rroxscaffold_1G00056600 Rroxscaffold_2G00109650 Rroxscaffold_2G00119980 Rroxscaffold_3G00222550 Rroxscaffold_3G00224980 Rroxscaffold_3G00251020 Rroxscaffold_6G00411190 Rroxscaffold_7G00166520 Rroxscaffold_7G00172920 Rroxscaffold_7G00191860 Rroxscaffold_7G00194430
rosa_rugosa Rorug01G0198900 Rorug01G0217300 Rorug01G0244500 Rorug02G0147400 Rorug02G0152200 Rorug02G0595500 Rorug02G0595600 Rorug03G0060500 Rorug03G0203000 Rorug03G0285800 Rorug04G0027200 Rorug04G0027300 Rorug04G0225800 Rorug05G0073400 Rorug05G0213300 Rorug05G0324600 Rorug05G0390900 Rorug05G0391000 Rorug05G0391100 Rorug05G0391200 Rorug05G0462900 Rorug05G0473000 Rorug06G0256500 Rorug07G0199000 Rorug07G0208800 Rorug07G0208800 Rorug07G0316600 Rorug07G0316700
rosa_samantha Rh2BG532400 Rh2CG581900 Rh3CG322600 Rh6AG079900 Rh6AG250800 Rh6AG496300 Rh6BG506100 Rh6CG126000 Rh6CG511700 Rh6DG109400 Rh6DG112700 Rh7CG104500 Rh7CG322000 Rh7CG431500
rosa_wichuraiana Rw0G020410 Rw1G009190 Rw1G014580 Rw1G021000 Rw1G022190 Rw2G025900 Rw2G029920 Rw2G037530 Rw3G018560 Rw3G020560 Rw4G008500 Rw4G022520 Rw5G019030 Rw5G031180 Rw5G044830 Rw6G005010 Rw6G006890 Rw6G011330 Rw6G011380 Rw6G023900 Rw7G028490 Rw7G030170 Rw7G030370 Rw7G032030 Rw7G032040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 150
Acc36I ACCTGC 1 cut(s) 173
AciI CCGC 4 cut(s) 38, 78, 81, 113
AcyI GRCGYC 2 cut(s) 99, 147
AfeI AGCGCT 1 cut(s) 159
AfiI CCNNNNNNNGG 1 cut(s) 108
AjnI CCWGG 1 cut(s) 101
AluBI AGCT 2 cut(s) 50, 61
AluI AGCT 2 cut(s) 50, 61
Alw26I GTCTC 1 cut(s) 19
Ama87I CYCGRG 1 cut(s) 62
Aor51HI AGCGCT 1 cut(s) 159
ApeKI GCWGC 4 cut(s) 50, 155, 160, 225
AspLEI GCGC 1 cut(s) 160
AvaI CYCGRG 1 cut(s) 62
BbvI GCAGC 4 cut(s) 37, 147, 167, 212
BceAI ACGGC 1 cut(s) 58
BcgI CGANNNNNNTGC 2 cut(s) 134, 168
BciT130I CCWGG 1 cut(s) 103
BcoDI GTCTC 1 cut(s) 19
BfmI CTRYAG 1 cut(s) 123
BfoI RGCGCY 1 cut(s) 161
BfuAI ACCTGC 1 cut(s) 173
BglII AGATCT 1 cut(s) 119
BisI GCNGC 5 cut(s) 51, 79, 156, 161, 226
BlsI GCNGC 5 cut(s) 52, 80, 157, 162, 227
Bme1390I CCNGG 1 cut(s) 103
BmeT110I CYCGRG 1 cut(s) 62
BmrFI CCNGG 1 cut(s) 103
BsaHI GRCGYC 2 cut(s) 99, 147
BsaI GGTCTC 1 cut(s) 19
BsaJI CCNNGG 1 cut(s) 102
Bsc4I CCNNNNNNNGG 1 cut(s) 108
Bse118I RCCGGY 1 cut(s) 140
Bse3DI GCAATG 1 cut(s) 150
BseBI CCWGG 1 cut(s) 103
BseDI CCNNGG 1 cut(s) 102
BseLI CCNNNNNNNGG 1 cut(s) 108
BseMI GCAATG 1 cut(s) 150
BseMII CTCAG 1 cut(s) 71
BseXI GCAGC 4 cut(s) 37, 147, 167, 212
BsgI GTGCAG 1 cut(s) 195
BsiHKCI CYCGRG 1 cut(s) 62
BsiSI CCGG 2 cut(s) 91, 141
BslI CCNNNNNNNGG 1 cut(s) 108
BsmAI GTCTC 1 cut(s) 19
BsmI GAATGC 1 cut(s) 11
Bso31I GGTCTC 1 cut(s) 19
BsoBI CYCGRG 1 cut(s) 62
Bsp143I GATC 1 cut(s) 119
BspACI CCGC 4 cut(s) 38, 78, 81, 113
BspCNI CTCAG 1 cut(s) 70
BspMAI CTGCAG 1 cut(s) 127
BspMI ACCTGC 1 cut(s) 173
BspTNI GGTCTC 1 cut(s) 19
BsrDI GCAATG 1 cut(s) 150
BsrFI RCCGGY 1 cut(s) 140
BssAI RCCGGY 1 cut(s) 140
BssECI CCNNGG 1 cut(s) 102
BssMI GATC 1 cut(s) 119
BssNI GRCGYC 2 cut(s) 99, 147
Bst2UI CCWGG 1 cut(s) 103
BstACI GRCGYC 2 cut(s) 99, 147
BstC8I GCNNGC 1 cut(s) 142
BstDEI CTNAG 1 cut(s) 57
BstH2I RGCGCY 1 cut(s) 161
BstHHI GCGC 1 cut(s) 160
BstKTI GATC 1 cut(s) 122
BstMAI GTCTC 1 cut(s) 19
BstMBI GATC 1 cut(s) 119
BstMWI GCNNNNNNNGC 2 cut(s) 67, 87
BstNI CCWGG 1 cut(s) 103
BstSCI CCNGG 1 cut(s) 101
BstSFI CTRYAG 1 cut(s) 123
BstV1I GCAGC 4 cut(s) 37, 147, 167, 212
BstX2I RGATCY 1 cut(s) 119
BstYI RGATCY 1 cut(s) 119
BveI ACCTGC 1 cut(s) 173
Cac8I GCNNGC 1 cut(s) 142
CfoI GCGC 1 cut(s) 160
Cfr10I RCCGGY 1 cut(s) 140
CseI GACGC 1 cut(s) 107
CviJI RGCY 2 cut(s) 50, 61
CviKI_1 RGCY 2 cut(s) 50, 61
DdeI CTNAG 1 cut(s) 57
DpnI GATC 1 cut(s) 121
DpnII GATC 1 cut(s) 119
EciI GGCGGA 1 cut(s) 128
Eco31I GGTCTC 1 cut(s) 19
Eco47III AGCGCT 1 cut(s) 159
Eco88I CYCGRG 1 cut(s) 62
EcoRII CCWGG 1 cut(s) 101
FauI CCCGC 1 cut(s) 74
Fnu4HI GCNGC 5 cut(s) 51, 79, 156, 161, 226
Fsp4HI GCNGC 5 cut(s) 51, 79, 156, 161, 226
GlaI GCGC 1 cut(s) 159
GluI GCNGC 5 cut(s) 51, 79, 156, 161, 226
HaeII RGCGCY 1 cut(s) 161
HapII CCGG 2 cut(s) 91, 141
HgaI GACGC 1 cut(s) 107
HhaI GCGC 1 cut(s) 160
Hin1I GRCGYC 2 cut(s) 99, 147
Hin6I GCGC 1 cut(s) 158
HinP1I GCGC 1 cut(s) 158
HinfI GANTC 1 cut(s) 135
HpaII CCGG 2 cut(s) 91, 141
Hpy188III TCNNGA 1 cut(s) 22
Hpy99I CGWCG 1 cut(s) 149
HpyAV CCTTC 1 cut(s) 88
HpyCH4IV ACGT 2 cut(s) 147, 172
HpyCH4V TGCA 7 cut(s) 9, 53, 125, 155, 176, 182, 207
HpyF10VI GCNNNNNNNGC 2 cut(s) 67, 87
HpyF3I CTNAG 1 cut(s) 57
HpySE526I ACGT 2 cut(s) 147, 172
Hsp92I GRCGYC 2 cut(s) 99, 147
HspAI GCGC 1 cut(s) 158
KroI GCCGGC 1 cut(s) 140
KroNI GCCGGC 1 cut(s) 142
Kzo9I GATC 1 cut(s) 119
LpnPI CCDG 8 cut(s) 35, 88, 104, 115, 154, 168, 173, 178
Lsp1109I GCAGC 4 cut(s) 37, 147, 167, 212
MaeII ACGT 2 cut(s) 147, 172
MalI GATC 1 cut(s) 121
MboI GATC 1 cut(s) 119
MflI RGATCY 1 cut(s) 119
MlyI GAGTC 1 cut(s) 144
MnlI CCTC 2 cut(s) 58, 227
MreI CGCCGGCG 1 cut(s) 140
MroNI GCCGGC 1 cut(s) 140
MseI TTAA 1 cut(s) 32
MspI CCGG 2 cut(s) 91, 141
MspR9I CCNGG 1 cut(s) 103
Mva1269I GAATGC 1 cut(s) 11
MvaI CCWGG 1 cut(s) 103
MwoI GCNNNNNNNGC 2 cut(s) 67, 87
NaeI GCCGGC 1 cut(s) 142
NdeII GATC 1 cut(s) 119
NgoMIV GCCGGC 1 cut(s) 140
PaeR7I CTCGAG 1 cut(s) 62
PcsI WCGNNNNNNNCGW 1 cut(s) 144
PctI GAATGC 1 cut(s) 11
PdiI GCCGGC 1 cut(s) 142
PkrI GCNGC 5 cut(s) 52, 80, 157, 162, 227
PleI GAGTC 1 cut(s) 143
PpsI GAGTC 1 cut(s) 143
Psp6I CCWGG 1 cut(s) 101
PspGI CCWGG 1 cut(s) 101
PspXI VCTCGAGB 1 cut(s) 62
PstI CTGCAG 1 cut(s) 127
PsuI RGATCY 1 cut(s) 119
SaqAI TTAA 1 cut(s) 32
SatI GCNGC 5 cut(s) 51, 79, 156, 161, 226
Sau3AI GATC 1 cut(s) 119
SchI GAGTC 1 cut(s) 144
ScrFI CCNGG 1 cut(s) 103
SetI ASST 7 cut(s) 52, 63, 150, 175, 187, 192, 219
SfcI CTRYAG 1 cut(s) 123
Sfr274I CTCGAG 1 cut(s) 62
SgrAI CRCCGGYG 1 cut(s) 140
SlaI CTCGAG 1 cut(s) 62
SmlI CTYRAG 1 cut(s) 62
SmoI CTYRAG 1 cut(s) 62
SsiI CCGC 4 cut(s) 38, 78, 81, 113
StyD4I CCNGG 1 cut(s) 101
TaiI ACGT 2 cut(s) 150, 175
TaqI TCGA 2 cut(s) 63, 219
TauI GCSGC 1 cut(s) 81
Tru1I TTAA 1 cut(s) 32
Tru9I TTAA 1 cut(s) 32
TseI GCWGC 4 cut(s) 50, 155, 160, 225
XhoI CTCGAG 1 cut(s) 62
ZraI GACGTC 1 cut(s) 148
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.