Rw2G037530

Protein FAR1-RELATED SEQUENCE 5-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0000164
Physical Location & Seq
Forward (+)
61879613 .. 61881928
2316 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G037530.1

Sequence Viewer

Length: 987 bp
ATGGAGTCAGAGGATGATCAGGTTTATATTCCTCAAGTAAAAGCAGAGTTGATGCCTAAATTACACCAAGAGTTTGAAACAATAGATGAGGTTGCTACTTTCTACAATAGATATACAAAAGAAGCAGGGTTCAGTATTAGAAGTCATTCTAGAAGGAGTATGTTTGTTATAAGCAAGGAACTTCCAAGGTTCAAGGAGAAAAATGTAAGAAAGGATTACCACAACTTGGTAAATGTTCAGAAACATAAACAGTTTGAATTCTTTGGTGTTCAGGTGGGTGGCATTGAAAATATTGGTTGTACACAACGTGATTTGTATAATTATGGAAGAAGTTGTTGTCAAGAGAAGAAGGGGCATGGTGGAGATCTATTGTACATGCATTTTCAGAATGAGAAAGAAAAAGATTCTTCTTCTATCTATATAATGGAGTCAGATGAGGAAAACAGAGTAACACGGTGCTTTTGGGCTGATTCAATTTCAAGACGAGCTTACAGCTTTTATGGAGATGTAGTTATCTTTGACACTACATACAACATAAATCGGTATGGAATGATTTTTGCACCATTCACTGGTGTTAATAATCATGGGCAGACAATCATCTTTGCTTCTGCATTCTTAAATGAGGAGACAATTAATTCTTTTGTTTGTAGAGAGGAGTTTGACTCAAGATGGACTGAAATTATTGAGAAAAGTGGGTTGAGTGATAACAAGTGGTTGCAGTCAATATATGAAATTCGTTCATCATGGATACCAGCACATTTTGAGAGGGGACTTCTTCATCAACGCTATCATGAGTTAGAGAAGGATCATATCAATATTGATGAGAAGGCAAGAACTGTCATGTCACTTGACATTGAAGATCATATGGCCAAGATTTATGCACGTAAGATATTTTATGAAGTTCAAGAACAACCTGCTATTAACAAAGATGGGGAGTCAAGTTCCACCAATATGGATGAGGAGTCAAGTTCAACATGCTCTTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE SWIM

Protein Analysis

328

Amino Acids

38.55

Weight (kDa)

5.46

Isoelectric Point (pI)

63.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MULE PF10551 170 - 216 3.2e-09 MULE transposase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000164)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02320 FvH4_1g21472 FvH4_2g00813 FvH4_2g02512 FvH4_2g03921 FvH4_2g23460 FvH4_3g29141 FvH4_4g05791 FvH4_4g06321 FvH4_4g15595 FvH4_4g18162 FvH4_4g18163 FvH4_4g29541 FvH4_4g29541 FvH4_4g29541 FvH4_4g29541 FvH4_4g29541 FvH4_5g31093 FvH4_6g01982 FvH4_6g21931 FvH4_6g44691 FvH4_6g48541
prunus_persica Prupe.1G074100_v2.0.a1 Prupe.3G021400_v2.0.a1
pyrus_communis pycom02g18570 pycom14g00670
rosa_chinensis RchiOBHm_Chr1g0379201 RchiOBHm_Chr1g0379361 RchiOBHm_Chr4g0405981 RchiOBHm_Chr5g0073641 RchiOBHm_Chr5g0073651 RchiOBHm_Chr7g0236661
rosa_multiflora Rmu_co8179562.1_g000001 Rmu_co8343647.1_g000001 Rmu_sc0000041.1_g000017 Rmu_sc0000114.1_g000020 Rmu_sc0000286.1_g000006 Rmu_sc0000308.1_g000038 Rmu_sc0000365.1_g000061 Rmu_sc0000365.1_g000062 Rmu_sc0000538.1_g000060 Rmu_sc0000538.1_g000061 Rmu_sc0000586.1_g000016 Rmu_sc0000898.1_g000007 Rmu_sc0000913.1_g000003 Rmu_sc0000913.1_g000004 Rmu_sc0000996.1_g000006 Rmu_sc0000996.1_g000007 Rmu_sc0000998.1_g000003 Rmu_sc0001350.1_g000009 Rmu_sc0002079.1_g000009 Rmu_sc0002200.1_g000013 Rmu_sc0002226.1_g000025 Rmu_sc0002279.1_g000014 Rmu_sc0002478.1_g000014 Rmu_sc0002717.1_g000004 Rmu_sc0002868.1_g000027 Rmu_sc0002889.1_g000043 Rmu_sc0003023.1_g000001 Rmu_sc0003110.1_g000006 Rmu_sc0003226.1_g000028 Rmu_sc0003226.1_g000029 Rmu_sc0003337.1_g000053 Rmu_sc0003558.1_g000007 Rmu_sc0004345.1_g000014 Rmu_sc0004383.1_g000007 Rmu_sc0004888.1_g000021 Rmu_sc0005114.1_g000012 Rmu_sc0005223.1_g000019 Rmu_sc0005223.1_g000020 Rmu_sc0005639.1_g000025 Rmu_sc0005685.1_g000027 Rmu_sc0005992.1_g000002 Rmu_sc0006326.1_g000034 Rmu_sc0006326.1_g000035 Rmu_sc0007390.1_g000012 Rmu_sc0007451.1_g000006 Rmu_sc0007825.1_g000003 Rmu_sc0008600.1_g000023 Rmu_sc0009291.1_g000003 Rmu_sc0012046.1_g000001 Rmu_sc0012046.1_g000002 Rmu_sc0012710.1_g000001 Rmu_sc0015238.1_g000001 Rmu_sc0016125.1_g000003 Rmu_sc0016175.1_g000001 Rmu_sc0016898.1_g000001 Rmu_sc0017323.1_g000010 Rmu_sc0017874.1_g000002 Rmu_sc0019167.1_g000001 Rmu_sc0020815.1_g000006 Rmu_sc0025564.1_g000001 Rmu_sc0026418.1_g000001 Rmu_sc0035188.1_g000002 Rmu_sc0039254.1_g000001 Rmu_ssc0000120.1_g000015 Rmu_ssc0000120.1_g000016 Rmu_ssc0000330.1_g000023 Rmu_ssc0000433.1_g000004
rosa_roxburghii Rroxscaffold_1G00047130 Rroxscaffold_1G00051320 Rroxscaffold_1G00056600 Rroxscaffold_2G00109650 Rroxscaffold_2G00119980 Rroxscaffold_3G00222550 Rroxscaffold_3G00224980 Rroxscaffold_3G00251020 Rroxscaffold_6G00411190 Rroxscaffold_7G00166520 Rroxscaffold_7G00172920 Rroxscaffold_7G00191860 Rroxscaffold_7G00194430
rosa_rugosa Rorug01G0198900 Rorug01G0217300 Rorug01G0244500 Rorug02G0147400 Rorug02G0152200 Rorug02G0595500 Rorug02G0595600 Rorug03G0060500 Rorug03G0203000 Rorug03G0285800 Rorug04G0027200 Rorug04G0027300 Rorug04G0225800 Rorug05G0073400 Rorug05G0213300 Rorug05G0324600 Rorug05G0390900 Rorug05G0391000 Rorug05G0391100 Rorug05G0391200 Rorug05G0462900 Rorug05G0473000 Rorug06G0256500 Rorug07G0199000 Rorug07G0208800 Rorug07G0208800 Rorug07G0316600 Rorug07G0316700
rosa_samantha Rh2BG532400 Rh2CG581900 Rh3CG322600 Rh6AG079900 Rh6AG250800 Rh6AG496300 Rh6BG506100 Rh6CG126000 Rh6CG511700 Rh6DG109400 Rh6DG112700 Rh7CG104500 Rh7CG322000 Rh7CG431500
rosa_wichuraiana Rw0G020410 Rw1G009190 Rw1G014580 Rw1G021000 Rw1G022190 Rw2G025900 Rw2G029920 Rw2G037530 Rw3G018560 Rw3G020560 Rw4G008500 Rw4G022520 Rw5G019030 Rw5G031180 Rw5G044830 Rw6G005010 Rw6G006890 Rw6G011330 Rw6G011380 Rw6G023900 Rw7G028490 Rw7G030170 Rw7G030370 Rw7G032030 Rw7G032040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 170
Acc36I ACCTGC 1 cut(s) 922
AccB7I CCANNNNNTGG 2 cut(s) 226, 569
AclWI GGATC 1 cut(s) 813
AcoI YGGCCR 1 cut(s) 867
AcsI RAATTY 2 cut(s) 257, 732
AdeI CACNNNGTG 1 cut(s) 308
AfaI GTAC 2 cut(s) 301, 374
AfiI CCNNNNNNNGG 2 cut(s) 226, 569
AgsI TTSAA 9 cut(s) 77, 193, 257, 287, 474, 480, 857, 905, 972
AluBI AGCT 2 cut(s) 488, 495
AluI AGCT 2 cut(s) 488, 495
Alw26I GTCTC 1 cut(s) 620
AlwI GGATC 1 cut(s) 813
AoxI GGCC 1 cut(s) 867
ApoI RAATTY 2 cut(s) 257, 732
AseI ATTAAT 1 cut(s) 633
Asp700I GAANNNNTTC 1 cut(s) 145
BalI TGGCCA 1 cut(s) 869
BccI CCATC 2 cut(s) 663, 923
BciVI GTATCC 1 cut(s) 741
BclI TGATCA 1 cut(s) 16
BcoDI GTCTC 1 cut(s) 620
BfaI CTAG 1 cut(s) 150
BfuAI ACCTGC 1 cut(s) 922
BfuI GTATCC 1 cut(s) 741
BglII AGATCT 1 cut(s) 364
BmsI GCATC 1 cut(s) 42
BplI GAGNNNNNCTC 2 cut(s) 647, 679
BpuEI CTTGAG 2 cut(s) 18, 649
BsaAI YACGTR 1 cut(s) 884
BsaJI CCNNGG 1 cut(s) 185
BsaXI ACNNNNNCTCC 2 cut(s) 495, 525
Bsc4I CCNNNNNNNGG 2 cut(s) 226, 569
Bse1I ACTGG 1 cut(s) 574
BseDI CCNNGG 1 cut(s) 185
BseGI GGATG 2 cut(s) 19, 961
BseLI CCNNNNNNNGG 2 cut(s) 226, 569
BseNI ACTGG 1 cut(s) 574
BseRI GAGGAG 3 cut(s) 638, 668, 974
BshFI GGCC 1 cut(s) 869
BslFI GGGAC 1 cut(s) 783
BslI CCNNNNNNNGG 2 cut(s) 226, 569
BsmAI GTCTC 1 cut(s) 620
BsmFI GGGAC 1 cut(s) 783
BsmI GAATGC 1 cut(s) 611
BsnI GGCC 1 cut(s) 869
Bsp1407I TGTACA 2 cut(s) 299, 372
Bsp143I GATC 4 cut(s) 16, 364, 805, 859
BspANI GGCC 1 cut(s) 869
BspHI TCATGA 1 cut(s) 790
BspMI ACCTGC 1 cut(s) 922
BspPI GGATC 1 cut(s) 813
BsrGI TGTACA 2 cut(s) 299, 372
BsrI ACTGG 1 cut(s) 574
BssECI CCNNGG 1 cut(s) 185
BssMI GATC 4 cut(s) 16, 364, 805, 859
BssT1I CCWWGG 1 cut(s) 185
Bst4CI ACNGT 3 cut(s) 252, 456, 838
BstAUI TGTACA 2 cut(s) 299, 372
BstBAI YACGTR 1 cut(s) 884
BstF5I GGATG 2 cut(s) 19, 961
BstKTI GATC 4 cut(s) 19, 367, 808, 862
BstMAI GTCTC 1 cut(s) 620
BstMBI GATC 4 cut(s) 16, 364, 805, 859
BstNSI RCATGY 2 cut(s) 379, 978
BstX2I RGATCY 1 cut(s) 364
BstXI CCANNNNNNTGG 1 cut(s) 952
BstYI RGATCY 1 cut(s) 364
BsuI GTATCC 1 cut(s) 741
BsuRI GGCC 1 cut(s) 869
BtsCI GGATG 2 cut(s) 19, 961
BtsIMutI CAGTG 1 cut(s) 567
BveI ACCTGC 1 cut(s) 922
CciI TCATGA 1 cut(s) 790
Csp6I GTAC 2 cut(s) 300, 373
CviAII CATG 7 cut(s) 356, 376, 584, 744, 791, 841, 975
CviJI RGCY 4 cut(s) 467, 488, 495, 869
CviKI_1 RGCY 4 cut(s) 467, 488, 495, 869
CviQI GTAC 2 cut(s) 300, 373
DpnI GATC 4 cut(s) 18, 366, 807, 861
DpnII GATC 4 cut(s) 16, 364, 805, 859
DraIII CACNNNGTG 1 cut(s) 308
EaeI YGGCCR 1 cut(s) 867
Eco130I CCWWGG 1 cut(s) 185
EcoRI GAATTC 1 cut(s) 257
EcoT14I CCWWGG 1 cut(s) 185
EcoT22I ATGCAT 1 cut(s) 381
ErhI CCWWGG 1 cut(s) 185
FaeI CATG 7 cut(s) 359, 379, 587, 747, 794, 844, 978
FalI AAGNNNNNCTT 2 cut(s) 472, 504
FaqI GGGAC 1 cut(s) 783
FatI CATG 7 cut(s) 355, 375, 583, 743, 790, 840, 974
FauNDI CATATG 1 cut(s) 864
FbaI TGATCA 1 cut(s) 16
FokI GGATG 2 cut(s) 26, 968
FspBI CTAG 1 cut(s) 150
HaeIII GGCC 1 cut(s) 869
Hin1II CATG 7 cut(s) 359, 379, 587, 747, 794, 844, 978
HinfI GANTC 7 cut(s) 5, 404, 428, 470, 662, 935, 962
Hpy166II GTNNAC 1 cut(s) 302
Hpy188I TCNGA 4 cut(s) 10, 240, 387, 433
Hpy188III TCNNGA 6 cut(s) 150, 341, 480, 666, 791, 905
Hpy8I GTNNAC 1 cut(s) 302
HpyAV CCTTC 4 cut(s) 147, 343, 796, 820
HpyCH4III ACNGT 3 cut(s) 252, 456, 838
HpyCH4IV ACGT 2 cut(s) 307, 883
HpyCH4V TGCA 5 cut(s) 379, 560, 611, 718, 881
HpySE526I ACGT 2 cut(s) 307, 883
Hsp92II CATG 7 cut(s) 359, 379, 587, 747, 794, 844, 978
Ksp22I TGATCA 1 cut(s) 16
Kzo9I GATC 4 cut(s) 16, 364, 805, 859
LpnPI CCDG 6 cut(s) 5, 111, 257, 555, 765, 927
LweI GCATC 1 cut(s) 42
MaeI CTAG 1 cut(s) 150
MaeII ACGT 2 cut(s) 307, 883
MaeIII GTNAC 2 cut(s) 448, 843
MalI GATC 4 cut(s) 18, 366, 807, 861
MboI GATC 4 cut(s) 16, 364, 805, 859
MboII GAAGA 6 cut(s) 339, 358, 399, 402, 767, 869
MflI RGATCY 1 cut(s) 364
MlsI TGGCCA 1 cut(s) 869
MluCI AATT 8 cut(s) 59, 257, 319, 474, 630, 634, 678, 732
MluNI TGGCCA 1 cut(s) 869
MlyI GAGTC 5 cut(s) 14, 437, 656, 944, 971
MnlI CCTC 8 cut(s) 4, 42, 82, 430, 616, 646, 759, 952
Mox20I TGGCCA 1 cut(s) 869
Mph1103I ATGCAT 1 cut(s) 381
MroXI GAANNNNTTC 1 cut(s) 145
MscI TGGCCA 1 cut(s) 869
MseI TTAA 4 cut(s) 576, 617, 633, 921
MslI CAYNNNNRTG 1 cut(s) 950
Msp20I TGGCCA 1 cut(s) 869
Mva1269I GAATGC 1 cut(s) 611
NdeI CATATG 1 cut(s) 864
NdeII GATC 4 cut(s) 16, 364, 805, 859
NlaIII CATG 7 cut(s) 359, 379, 587, 747, 794, 844, 978
NmuCI GTSAC 1 cut(s) 843
NsiI ATGCAT 1 cut(s) 381
NspI RCATGY 2 cut(s) 379, 978
PagI TCATGA 1 cut(s) 790
PctI GAATGC 1 cut(s) 611
PdmI GAANNNNTTC 1 cut(s) 145
PfeI GAWTC 2 cut(s) 404, 470
PflMI CCANNNNNTGG 2 cut(s) 226, 569
PleI GAGTC 5 cut(s) 13, 436, 656, 943, 970
PpsI GAGTC 5 cut(s) 13, 436, 656, 943, 970
Ppu21I YACGTR 1 cut(s) 884
PshBI ATTAAT 1 cut(s) 633
PsiI TTATAA 1 cut(s) 170
PsuI RGATCY 1 cut(s) 364
RsaI GTAC 2 cut(s) 301, 374
RsaNI GTAC 2 cut(s) 300, 373
RseI CAYNNNNRTG 1 cut(s) 950
SaqAI TTAA 4 cut(s) 576, 617, 633, 921
Sau3AI GATC 4 cut(s) 16, 364, 805, 859
SchI GAGTC 5 cut(s) 14, 437, 656, 944, 971
SetI ASST 9 cut(s) 24, 93, 191, 276, 310, 490, 497, 886, 916
SfaNI GCATC 1 cut(s) 42
SmiMI CAYNNNNRTG 1 cut(s) 950
SmlI CTYRAG 2 cut(s) 33, 664
SmoI CTYRAG 2 cut(s) 33, 664
Sse9I AATT 8 cut(s) 59, 257, 319, 474, 630, 634, 678, 732
SspI AATATT 2 cut(s) 292, 817
SspMI CTAG 1 cut(s) 150
StyI CCWWGG 1 cut(s) 185
TaaI ACNGT 3 cut(s) 252, 456, 838
TaiI ACGT 2 cut(s) 310, 886
TasI AATT 8 cut(s) 59, 257, 319, 474, 630, 634, 678, 732
TatI WGTACW 2 cut(s) 299, 372
TfiI GAWTC 2 cut(s) 404, 470
Tru1I TTAA 4 cut(s) 576, 617, 633, 921
Tru9I TTAA 4 cut(s) 576, 617, 633, 921
TscAI CASTG 1 cut(s) 574
TseFI GTSAC 1 cut(s) 843
Tsp45I GTSAC 1 cut(s) 843
TspDTI ATGAA 4 cut(s) 729, 744, 767, 912
TspRI CASTG 1 cut(s) 574
Van91I CCANNNNNTGG 2 cut(s) 226, 569
VspI ATTAAT 1 cut(s) 633
XapI RAATTY 2 cut(s) 257, 732
XbaI TCTAGA 1 cut(s) 149
XceI RCATGY 2 cut(s) 379, 978
XmnI GAANNNNTTC 1 cut(s) 145
XspI CTAG 1 cut(s) 150
Zsp2I ATGCAT 1 cut(s) 381
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.