Rmu_sc0012710.1_g000001

Protein FAR1-RELATED SEQUENCE 5-like

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0012710.1
Physical Location & Seq
Reverse (-)
129 .. 1037
909 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0012710.1_g000001.1.cds

Sequence Viewer

Length: 909 bp
atgatatatgttgctgctttctacaatagatatgcaaaagaagcagggtttagtattagaagtcattctagtgtgactagcaaagataagaaacaacttatgagggagtatgtctattataagcaaggagattccaaagttgaaggagaaaagcgtaagagaggattaccaaaagtgggttgtaaagcaagaattgcagttgtgagaaagaaggagtctggaagatatgcaatctctgtatttgttgaggctcacaaccatccattaacaagcccacctagagtacatttgttgagatctcaccattgtgtttcagaagttaacacagttctatcacagcaactaagcttggtgaatgtggagaaacataaacagtttgaattctttggtgttcaggcaggtggcattcaaaatattggttttatacagcgtgatctatataattatggaagaacttgtcgtgaagagaagaaggggcgtgatggagatctactgtacatgcattttgagaatgagaaagaaaaagattcttcttttgtctatacaatggatggagatgaggaaaaccgagtaatacggtgcttttgggctgactcaatttcaagacgagcttatagcttttatggagatgtagttatctttgatactacatgcaacacaaatcggtatggaatgatttttccaccattcactggtgttaacaattatgggcaagcaatcatctttgcttgtgcattcttgaatgatgagacagccaatacttttgtttcgttattcaaggaatttctaaatgctatgccaggagatgcacaagaaaatgcccccaagatgatcattaccgaccaagatcttgctatgactaaagccattgcagttggcacattcttaataaattttatgagaagctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

302

Amino Acids

34.56

Weight (kDa)

8.97

Isoelectric Point (pI)

40.93

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000164)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02320 FvH4_1g21472 FvH4_2g00813 FvH4_2g02512 FvH4_2g03921 FvH4_2g23460 FvH4_3g29141 FvH4_4g05791 FvH4_4g06321 FvH4_4g15595 FvH4_4g18162 FvH4_4g18163 FvH4_4g29541 FvH4_4g29541 FvH4_4g29541 FvH4_4g29541 FvH4_4g29541 FvH4_5g31093 FvH4_6g01982 FvH4_6g21931 FvH4_6g44691 FvH4_6g48541
prunus_persica Prupe.1G074100_v2.0.a1 Prupe.3G021400_v2.0.a1
pyrus_communis pycom02g18570 pycom14g00670
rosa_chinensis RchiOBHm_Chr1g0379201 RchiOBHm_Chr1g0379361 RchiOBHm_Chr4g0405981 RchiOBHm_Chr5g0073641 RchiOBHm_Chr5g0073651 RchiOBHm_Chr7g0236661
rosa_multiflora Rmu_co8179562.1_g000001 Rmu_co8343647.1_g000001 Rmu_sc0000041.1_g000017 Rmu_sc0000114.1_g000020 Rmu_sc0000286.1_g000006 Rmu_sc0000308.1_g000038 Rmu_sc0000365.1_g000061 Rmu_sc0000365.1_g000062 Rmu_sc0000538.1_g000060 Rmu_sc0000538.1_g000061 Rmu_sc0000586.1_g000016 Rmu_sc0000898.1_g000007 Rmu_sc0000913.1_g000003 Rmu_sc0000913.1_g000004 Rmu_sc0000996.1_g000006 Rmu_sc0000996.1_g000007 Rmu_sc0000998.1_g000003 Rmu_sc0001350.1_g000009 Rmu_sc0002079.1_g000009 Rmu_sc0002200.1_g000013 Rmu_sc0002226.1_g000025 Rmu_sc0002279.1_g000014 Rmu_sc0002478.1_g000014 Rmu_sc0002717.1_g000004 Rmu_sc0002868.1_g000027 Rmu_sc0002889.1_g000043 Rmu_sc0003023.1_g000001 Rmu_sc0003110.1_g000006 Rmu_sc0003226.1_g000028 Rmu_sc0003226.1_g000029 Rmu_sc0003337.1_g000053 Rmu_sc0003558.1_g000007 Rmu_sc0004345.1_g000014 Rmu_sc0004383.1_g000007 Rmu_sc0004888.1_g000021 Rmu_sc0005114.1_g000012 Rmu_sc0005223.1_g000019 Rmu_sc0005223.1_g000020 Rmu_sc0005639.1_g000025 Rmu_sc0005685.1_g000027 Rmu_sc0005992.1_g000002 Rmu_sc0006326.1_g000034 Rmu_sc0006326.1_g000035 Rmu_sc0007390.1_g000012 Rmu_sc0007451.1_g000006 Rmu_sc0007825.1_g000003 Rmu_sc0008600.1_g000023 Rmu_sc0009291.1_g000003 Rmu_sc0012046.1_g000001 Rmu_sc0012046.1_g000002 Rmu_sc0012710.1_g000001 Rmu_sc0015238.1_g000001 Rmu_sc0016125.1_g000003 Rmu_sc0016175.1_g000001 Rmu_sc0016898.1_g000001 Rmu_sc0017323.1_g000010 Rmu_sc0017874.1_g000002 Rmu_sc0019167.1_g000001 Rmu_sc0020815.1_g000006 Rmu_sc0025564.1_g000001 Rmu_sc0026418.1_g000001 Rmu_sc0035188.1_g000002 Rmu_sc0039254.1_g000001 Rmu_ssc0000120.1_g000015 Rmu_ssc0000120.1_g000016 Rmu_ssc0000330.1_g000023 Rmu_ssc0000433.1_g000004
rosa_roxburghii Rroxscaffold_1G00047130 Rroxscaffold_1G00051320 Rroxscaffold_1G00056600 Rroxscaffold_2G00109650 Rroxscaffold_2G00119980 Rroxscaffold_3G00222550 Rroxscaffold_3G00224980 Rroxscaffold_3G00251020 Rroxscaffold_6G00411190 Rroxscaffold_7G00166520 Rroxscaffold_7G00172920 Rroxscaffold_7G00191860 Rroxscaffold_7G00194430
rosa_rugosa Rorug01G0198900 Rorug01G0217300 Rorug01G0244500 Rorug02G0147400 Rorug02G0152200 Rorug02G0595500 Rorug02G0595600 Rorug03G0060500 Rorug03G0203000 Rorug03G0285800 Rorug04G0027200 Rorug04G0027300 Rorug04G0225800 Rorug05G0073400 Rorug05G0213300 Rorug05G0324600 Rorug05G0390900 Rorug05G0391000 Rorug05G0391100 Rorug05G0391200 Rorug05G0462900 Rorug05G0473000 Rorug06G0256500 Rorug07G0199000 Rorug07G0208800 Rorug07G0208800 Rorug07G0316600 Rorug07G0316700
rosa_samantha Rh2BG532400 Rh2CG581900 Rh3CG322600 Rh6AG079900 Rh6AG250800 Rh6AG496300 Rh6BG506100 Rh6CG126000 Rh6CG511700 Rh6DG109400 Rh6DG112700 Rh7CG104500 Rh7CG322000 Rh7CG431500
rosa_wichuraiana Rw0G020410 Rw1G009190 Rw1G014580 Rw1G021000 Rw1G022190 Rw2G025900 Rw2G029920 Rw2G037530 Rw3G018560 Rw3G020560 Rw4G008500 Rw4G022520 Rw5G019030 Rw5G031180 Rw5G044830 Rw6G005010 Rw6G006890 Rw6G011330 Rw6G011380 Rw6G023900 Rw7G028490 Rw7G030170 Rw7G030370 Rw7G032030 Rw7G032040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 120
AarI CACCTGC 1 cut(s) 389
Acc36I ACCTGC 1 cut(s) 389
AccB7I CCANNNNNTGG 1 cut(s) 692
AcsI RAATTY 3 cut(s) 380, 782, 892
AfaI GTAC 2 cut(s) 285, 497
AfiI CCNNNNNNNGG 2 cut(s) 176, 692
AgsI TTSAA 6 cut(s) 143, 380, 410, 603, 742, 778
AjnI CCWGG 1 cut(s) 799
AleI CACNNNNGTG 1 cut(s) 306
AluBI AGCT 4 cut(s) 348, 611, 618, 906
AluI AGCT 4 cut(s) 348, 611, 618, 906
Alw26I GTCTC 1 cut(s) 743
ApeKI GCWGC 1 cut(s) 14
ApoI RAATTY 3 cut(s) 380, 782, 892
Asp700I GAANNNNTTC 1 cut(s) 64
AsuHPI GGTGA 2 cut(s) 293, 364
BccI CCATC 3 cut(s) 267, 476, 545
BciT130I CCWGG 1 cut(s) 801
BclI TGATCA 1 cut(s) 831
BcoDI GTCTC 1 cut(s) 743
BfaI CTAG 4 cut(s) 69, 78, 279, 907
BfuAI ACCTGC 1 cut(s) 389
BglII AGATCT 3 cut(s) 296, 487, 847
BisI GCNGC 1 cut(s) 15
BlsI GCNGC 1 cut(s) 16
Bme1390I CCNGG 1 cut(s) 801
BmrFI CCNGG 1 cut(s) 801
BmsI GCATC 1 cut(s) 796
BsaBI GATNNNNATC 1 cut(s) 486
BsaXI ACNNNNNCTCC 2 cut(s) 618, 648
Bsc4I CCNNNNNNNGG 2 cut(s) 176, 692
Bse1I ACTGG 1 cut(s) 697
Bse3DI GCAATG 1 cut(s) 867
Bse8I GATNNNNATC 1 cut(s) 486
BseBI CCWGG 1 cut(s) 801
BseGI GGATG 2 cut(s) 259, 556
BseJI GATNNNNATC 1 cut(s) 486
BseLI CCNNNNNNNGG 2 cut(s) 176, 692
BseMI GCAATG 1 cut(s) 867
BseNI ACTGG 1 cut(s) 697
BslI CCNNNNNNNGG 2 cut(s) 176, 692
BsmAI GTCTC 1 cut(s) 743
BsmI GAATGC 2 cut(s) 405, 734
Bsp1407I TGTACA 1 cut(s) 495
Bsp143I GATC 5 cut(s) 296, 433, 487, 831, 847
BspMI ACCTGC 1 cut(s) 389
BsrDI GCAATG 1 cut(s) 867
BsrGI TGTACA 1 cut(s) 495
BsrI ACTGG 1 cut(s) 697
BssMI GATC 5 cut(s) 296, 433, 487, 831, 847
Bst2UI CCWGG 1 cut(s) 801
Bst4CI ACNGT 4 cut(s) 328, 375, 495, 579
Bst6I CTCTTC 1 cut(s) 459
BstAPI GCANNNNNTGC 1 cut(s) 194
BstAUI TGTACA 1 cut(s) 495
BstC8I GCNNGC 1 cut(s) 714
BstDEI CTNAG 1 cut(s) 344
BstF5I GGATG 2 cut(s) 259, 556
BstKTI GATC 5 cut(s) 299, 436, 490, 834, 850
BstMAI GTCTC 1 cut(s) 743
BstMBI GATC 5 cut(s) 296, 433, 487, 831, 847
BstMWI GCNNNNNNNGC 2 cut(s) 41, 194
BstNI CCWGG 1 cut(s) 801
BstNSI RCATGY 2 cut(s) 502, 654
BstSCI CCNGG 1 cut(s) 799
BstX2I RGATCY 3 cut(s) 296, 487, 847
BstYI RGATCY 3 cut(s) 296, 487, 847
BtsCI GGATG 2 cut(s) 259, 556
BtsIMutI CAGTG 1 cut(s) 690
BveI ACCTGC 1 cut(s) 389
Cac8I GCNNGC 1 cut(s) 714
Csp6I GTAC 2 cut(s) 284, 496
CviAII CATG 2 cut(s) 499, 651
CviJI RGCY 9 cut(s) 251, 273, 348, 590, 611, 618, 755, 866, 906
CviKI_1 RGCY 9 cut(s) 251, 273, 348, 590, 611, 618, 755, 866, 906
CviQI GTAC 2 cut(s) 284, 496
DdeI CTNAG 1 cut(s) 344
DpnI GATC 5 cut(s) 298, 435, 489, 833, 849
DpnII GATC 5 cut(s) 296, 433, 487, 831, 847
Eam1104I CTCTTC 1 cut(s) 459
EarI CTCTTC 1 cut(s) 459
EcoRI GAATTC 1 cut(s) 380
EcoRII CCWGG 1 cut(s) 799
EcoT22I ATGCAT 1 cut(s) 504
FaeI CATG 2 cut(s) 502, 654
FalI AAGNNNNNCTT 2 cut(s) 595, 627
FatI CATG 2 cut(s) 498, 650
FbaI TGATCA 1 cut(s) 831
Fnu4HI GCNGC 1 cut(s) 15
FokI GGATG 2 cut(s) 246, 563
Fsp4HI GCNGC 1 cut(s) 15
FspBI CTAG 4 cut(s) 69, 78, 279, 907
GluI GCNGC 1 cut(s) 15
Hin1II CATG 2 cut(s) 502, 654
HincII GTYRAC 2 cut(s) 322, 700
HindII GTYRAC 2 cut(s) 322, 700
HindIII AAGCTT 1 cut(s) 346
HinfI GANTC 4 cut(s) 131, 215, 527, 593
HpaI GTTAAC 2 cut(s) 322, 700
HphI GGTGA 2 cut(s) 293, 364
Hpy166II GTNNAC 2 cut(s) 322, 700
Hpy188I TCNGA 1 cut(s) 316
Hpy188III TCNNGA 4 cut(s) 219, 461, 603, 739
Hpy8I GTNNAC 2 cut(s) 322, 700
HpyAV CCTTC 3 cut(s) 137, 205, 466
HpyCH4III ACNGT 4 cut(s) 328, 375, 495, 579
HpyCH4V TGCA 8 cut(s) 35, 197, 230, 502, 654, 734, 809, 872
HpyF10VI GCNNNNNNNGC 2 cut(s) 41, 194
HpyF3I CTNAG 1 cut(s) 344
Hsp92II CATG 2 cut(s) 502, 654
Ksp22I TGATCA 1 cut(s) 831
KspAI GTTAAC 2 cut(s) 322, 700
Kzo9I GATC 5 cut(s) 296, 433, 487, 831, 847
LpnPI CCDG 7 cut(s) 30, 204, 380, 384, 678, 786, 813
LweI GCATC 1 cut(s) 796
MaeI CTAG 4 cut(s) 69, 78, 279, 907
MaeIII GTNAC 1 cut(s) 73
MalI GATC 5 cut(s) 298, 435, 489, 833, 849
MboI GATC 5 cut(s) 296, 433, 487, 831, 847
MboII GAAGA 5 cut(s) 234, 462, 476, 481, 522
MflI RGATCY 3 cut(s) 296, 487, 847
MluCI AATT 7 cut(s) 192, 380, 442, 597, 703, 782, 892
MlyI GAGTC 2 cut(s) 224, 587
MnlI CCTC 4 cut(s) 96, 155, 241, 553
Mph1103I ATGCAT 1 cut(s) 504
MroXI GAANNNNTTC 1 cut(s) 64
MseI TTAA 4 cut(s) 266, 321, 699, 887
MslI CAYNNNNRTG 2 cut(s) 69, 306
MspR9I CCNGG 1 cut(s) 801
Mva1269I GAATGC 2 cut(s) 405, 734
MvaI CCWGG 1 cut(s) 801
MwoI GCNNNNNNNGC 2 cut(s) 41, 194
NdeII GATC 5 cut(s) 296, 433, 487, 831, 847
NlaIII CATG 2 cut(s) 502, 654
NmuCI GTSAC 1 cut(s) 73
NsiI ATGCAT 1 cut(s) 504
NspI RCATGY 2 cut(s) 502, 654
OliI CACNNNNGTG 1 cut(s) 306
PaqCI CACCTGC 1 cut(s) 389
PctI GAATGC 2 cut(s) 405, 734
PdmI GAANNNNTTC 1 cut(s) 64
PfeI GAWTC 2 cut(s) 131, 527
PflMI CCANNNNNTGG 1 cut(s) 692
PkrI GCNGC 1 cut(s) 16
PleI GAGTC 2 cut(s) 223, 587
PpsI GAGTC 2 cut(s) 223, 587
PsiI TTATAA 1 cut(s) 120
Psp6I CCWGG 1 cut(s) 799
PspGI CCWGG 1 cut(s) 799
PsuI RGATCY 3 cut(s) 296, 487, 847
RsaI GTAC 2 cut(s) 285, 497
RsaNI GTAC 2 cut(s) 284, 496
RseI CAYNNNNRTG 2 cut(s) 69, 306
SaqAI TTAA 4 cut(s) 266, 321, 699, 887
SatI GCNGC 1 cut(s) 15
Sau3AI GATC 5 cut(s) 296, 433, 487, 831, 847
SchI GAGTC 2 cut(s) 224, 587
ScrFI CCNGG 1 cut(s) 801
SetI ASST 6 cut(s) 280, 350, 403, 613, 620, 908
SfaNI GCATC 1 cut(s) 796
SmiMI CAYNNNNRTG 2 cut(s) 69, 306
Sse9I AATT 7 cut(s) 192, 380, 442, 597, 703, 782, 892
SspI AATATT 1 cut(s) 415
SspMI CTAG 4 cut(s) 69, 78, 279, 907
StyD4I CCNGG 1 cut(s) 799
TaaI ACNGT 4 cut(s) 328, 375, 495, 579
TasI AATT 7 cut(s) 192, 380, 442, 597, 703, 782, 892
TatI WGTACW 2 cut(s) 283, 495
TfiI GAWTC 2 cut(s) 131, 527
Tru1I TTAA 4 cut(s) 266, 321, 699, 887
Tru9I TTAA 4 cut(s) 266, 321, 699, 887
TscAI CASTG 1 cut(s) 697
TseFI GTSAC 1 cut(s) 73
TseI GCWGC 1 cut(s) 14
Tsp45I GTSAC 1 cut(s) 73
TspRI CASTG 1 cut(s) 697
Van91I CCANNNNNTGG 1 cut(s) 692
XapI RAATTY 3 cut(s) 380, 782, 892
XceI RCATGY 2 cut(s) 502, 654
XmnI GAANNNNTTC 1 cut(s) 64
XspI CTAG 4 cut(s) 69, 78, 279, 907
Zsp2I ATGCAT 1 cut(s) 504
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.