Rmu_sc0002889.1_g000043

Protein FAR1-RELATED SEQUENCE 5-like

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002889.1
Physical Location & Seq
Reverse (-)
153889 .. 155270
1382 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002889.1_g000043.1.cds

Sequence Viewer

Length: 1296 bp
atgactaaagccatttcagaagcactcccacaaacatttcatagatattgcagttggcacattcttaataaattttctgagaagctagatgcgattaaatatcgggattcctaccaagactttcatagctgcatatggaattcaagtagtagagaggagtttgactcaagatggattgaaattattgagaagagtgggttgagtgataacaagtggctggagtcgatatacgaaattcgttcatcatggataccagcatatgtcaatcatattttctcagctggaatgtcaagtagtcaaagagcagagagtaaacattctttcttcaagaattatgtttctaagtggaattcattggtggaatttatggttcagtttaagagggggcttcttcaccaacgacattatgagttagaggaggatcatattaatattgatgagaaggcaaaaactgtcatgtcccttgacatagaagatcatatggccaaggtttatacacgtaaactattttatgaagttcaagaacagttgagagagagcttcaaatataaacttgaacttgtgtttgaaaatgtcactcaagaacaatttaaggttatacgaaagaacattgatacttgtaagtctcgtgaacttacttatgaaaagaaatatgattttgcatcatgcagctgtagaatgtttgacagtcaaggtttcccatgtcggcatgttttggcatatttgattaagatccaagatgttgataaattgcctattcaatacattttgaagagatggactaaggctgcaagacatagagttgtgttagattgtaatggaatggagataaaagataacaaagctttacttccaaggaggactaaactattccagcatgctacatatgcaattgataaggttatggtgagtgatgaggctaccaagttgtttatggaagcattggatgcttttttggagaatattaaaccattaattagtaatgaaggtagacaaactgaagtagatttggagaccgagaccaacaatgctactattcggcatgtttttaatgaaccacaccaagtgagagcaaaagggtgtgggacaaggttgaagaaaggaaaagagaagaggaaagttaaggtaaatgccagtcaaggtaggcaatgccatggatgtggactatttggtcagtcacatgacaaaagaaattgtccaacacttcatggaagacgtgctattgatgaaaatggagattcaagttccactagtattgatgaggatagttgttcatcatctcatttggcagaataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

431

Amino Acids

50.45

Weight (kDa)

8.56

Isoelectric Point (pI)

55.79

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000164)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02320 FvH4_1g21472 FvH4_2g00813 FvH4_2g02512 FvH4_2g03921 FvH4_2g23460 FvH4_3g29141 FvH4_4g05791 FvH4_4g06321 FvH4_4g15595 FvH4_4g18162 FvH4_4g18163 FvH4_4g29541 FvH4_4g29541 FvH4_4g29541 FvH4_4g29541 FvH4_4g29541 FvH4_5g31093 FvH4_6g01982 FvH4_6g21931 FvH4_6g44691 FvH4_6g48541
prunus_persica Prupe.1G074100_v2.0.a1 Prupe.3G021400_v2.0.a1
pyrus_communis pycom02g18570 pycom14g00670
rosa_chinensis RchiOBHm_Chr1g0379201 RchiOBHm_Chr1g0379361 RchiOBHm_Chr4g0405981 RchiOBHm_Chr5g0073641 RchiOBHm_Chr5g0073651 RchiOBHm_Chr7g0236661
rosa_multiflora Rmu_co8179562.1_g000001 Rmu_co8343647.1_g000001 Rmu_sc0000041.1_g000017 Rmu_sc0000114.1_g000020 Rmu_sc0000286.1_g000006 Rmu_sc0000308.1_g000038 Rmu_sc0000365.1_g000061 Rmu_sc0000365.1_g000062 Rmu_sc0000538.1_g000060 Rmu_sc0000538.1_g000061 Rmu_sc0000586.1_g000016 Rmu_sc0000898.1_g000007 Rmu_sc0000913.1_g000003 Rmu_sc0000913.1_g000004 Rmu_sc0000996.1_g000006 Rmu_sc0000996.1_g000007 Rmu_sc0000998.1_g000003 Rmu_sc0001350.1_g000009 Rmu_sc0002079.1_g000009 Rmu_sc0002200.1_g000013 Rmu_sc0002226.1_g000025 Rmu_sc0002279.1_g000014 Rmu_sc0002478.1_g000014 Rmu_sc0002717.1_g000004 Rmu_sc0002868.1_g000027 Rmu_sc0002889.1_g000043 Rmu_sc0003023.1_g000001 Rmu_sc0003110.1_g000006 Rmu_sc0003226.1_g000028 Rmu_sc0003226.1_g000029 Rmu_sc0003337.1_g000053 Rmu_sc0003558.1_g000007 Rmu_sc0004345.1_g000014 Rmu_sc0004383.1_g000007 Rmu_sc0004888.1_g000021 Rmu_sc0005114.1_g000012 Rmu_sc0005223.1_g000019 Rmu_sc0005223.1_g000020 Rmu_sc0005639.1_g000025 Rmu_sc0005685.1_g000027 Rmu_sc0005992.1_g000002 Rmu_sc0006326.1_g000034 Rmu_sc0006326.1_g000035 Rmu_sc0007390.1_g000012 Rmu_sc0007451.1_g000006 Rmu_sc0007825.1_g000003 Rmu_sc0008600.1_g000023 Rmu_sc0009291.1_g000003 Rmu_sc0012046.1_g000001 Rmu_sc0012046.1_g000002 Rmu_sc0012710.1_g000001 Rmu_sc0015238.1_g000001 Rmu_sc0016125.1_g000003 Rmu_sc0016175.1_g000001 Rmu_sc0016898.1_g000001 Rmu_sc0017323.1_g000010 Rmu_sc0017874.1_g000002 Rmu_sc0019167.1_g000001 Rmu_sc0020815.1_g000006 Rmu_sc0025564.1_g000001 Rmu_sc0026418.1_g000001 Rmu_sc0035188.1_g000002 Rmu_sc0039254.1_g000001 Rmu_ssc0000120.1_g000015 Rmu_ssc0000120.1_g000016 Rmu_ssc0000330.1_g000023 Rmu_ssc0000433.1_g000004
rosa_roxburghii Rroxscaffold_1G00047130 Rroxscaffold_1G00051320 Rroxscaffold_1G00056600 Rroxscaffold_2G00109650 Rroxscaffold_2G00119980 Rroxscaffold_3G00222550 Rroxscaffold_3G00224980 Rroxscaffold_3G00251020 Rroxscaffold_6G00411190 Rroxscaffold_7G00166520 Rroxscaffold_7G00172920 Rroxscaffold_7G00191860 Rroxscaffold_7G00194430
rosa_rugosa Rorug01G0198900 Rorug01G0217300 Rorug01G0244500 Rorug02G0147400 Rorug02G0152200 Rorug02G0595500 Rorug02G0595600 Rorug03G0060500 Rorug03G0203000 Rorug03G0285800 Rorug04G0027200 Rorug04G0027300 Rorug04G0225800 Rorug05G0073400 Rorug05G0213300 Rorug05G0324600 Rorug05G0390900 Rorug05G0391000 Rorug05G0391100 Rorug05G0391200 Rorug05G0462900 Rorug05G0473000 Rorug06G0256500 Rorug07G0199000 Rorug07G0208800 Rorug07G0208800 Rorug07G0316600 Rorug07G0316700
rosa_samantha Rh2BG532400 Rh2CG581900 Rh3CG322600 Rh6AG079900 Rh6AG250800 Rh6AG496300 Rh6BG506100 Rh6CG126000 Rh6CG511700 Rh6DG109400 Rh6DG112700 Rh7CG104500 Rh7CG322000 Rh7CG431500
rosa_wichuraiana Rw0G020410 Rw1G009190 Rw1G014580 Rw1G021000 Rw1G022190 Rw2G025900 Rw2G029920 Rw2G037530 Rw3G018560 Rw3G020560 Rw4G008500 Rw4G022520 Rw5G019030 Rw5G031180 Rw5G044830 Rw6G005010 Rw6G006890 Rw6G011330 Rw6G011380 Rw6G023900 Rw7G028490 Rw7G030170 Rw7G030370 Rw7G032030 Rw7G032040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1170
AccI GTMKAC 1 cut(s) 991
AclWI GGATC 2 cut(s) 429, 727
AcoI YGGCCR 1 cut(s) 483
AcsI RAATTY 5 cut(s) 71, 139, 234, 349, 362
AcuI CTGAAG 1 cut(s) 1020
AdeI CACNNNGTG 1 cut(s) 1066
AflIII ACRYGT 1 cut(s) 497
AhlI ACTAGT 1 cut(s) 1250
AjiI CACGTC 1 cut(s) 1217
AluBI AGCT 6 cut(s) 85, 129, 281, 540, 672, 845
AluI AGCT 6 cut(s) 85, 129, 281, 540, 672, 845
Alw26I GTCTC 3 cut(s) 630, 1007, 1013
AlwI GGATC 2 cut(s) 429, 727
AoxI GGCC 1 cut(s) 483
ApeKI GCWGC 3 cut(s) 129, 669, 788
ApoI RAATTY 5 cut(s) 71, 139, 234, 349, 362
AseI ATTAAT 2 cut(s) 429, 974
AsuHPI GGTGA 2 cut(s) 386, 919
BalI TGGCCA 1 cut(s) 485
BauI CACGAG 1 cut(s) 627
BbsI GAAGAC 1 cut(s) 1219
BbvI GCAGC 3 cut(s) 116, 681, 775
BccI CCATC 2 cut(s) 165, 771
BciVI GTATCC 1 cut(s) 243
BcoDI GTCTC 3 cut(s) 630, 1007, 1013
BcuI ACTAGT 1 cut(s) 1250
BfaI CTAG 2 cut(s) 86, 1251
BfmI CTRYAG 1 cut(s) 673
BfuI GTATCC 1 cut(s) 243
BisI GCNGC 3 cut(s) 130, 670, 789
BlsI GCNGC 3 cut(s) 131, 671, 790
BmgBI CACGTC 1 cut(s) 1217
BmsI GCATC 3 cut(s) 79, 671, 937
BpiI GAAGAC 1 cut(s) 1219
BplI GAGNNNNNCTC 2 cut(s) 149, 181
BpmI CTGGAG 1 cut(s) 239
BpuEI CTTGAG 2 cut(s) 151, 564
BsaAI YACGTR 1 cut(s) 500
BsaBI GATNNNNATC 1 cut(s) 731
BsaI GGTCTC 2 cut(s) 1007, 1013
BsaJI CCNNGG 3 cut(s) 486, 854, 1153
Bse1I ACTGG 1 cut(s) 1134
Bse3DI GCAATG 1 cut(s) 1154
Bse8I GATNNNNATC 1 cut(s) 731
BseDI CCNNGG 3 cut(s) 486, 854, 1153
BseGI GGATG 2 cut(s) 952, 1163
BseJI GATNNNNATC 1 cut(s) 731
BseMI GCAATG 1 cut(s) 1154
BseMII CTCAG 2 cut(s) 69, 291
BseNI ACTGG 1 cut(s) 1134
BseRI GAGGAG 2 cut(s) 170, 431
BseXI GCAGC 3 cut(s) 116, 681, 775
BshFI GGCC 1 cut(s) 485
BslFI GGGAC 2 cut(s) 445, 1099
BsmAI GTCTC 3 cut(s) 630, 1007, 1013
BsmFI GGGAC 2 cut(s) 445, 1099
BsnI GGCC 1 cut(s) 485
Bso31I GGTCTC 2 cut(s) 1007, 1013
Bsp143I GATC 3 cut(s) 421, 475, 732
Bsp19I CCATGG 1 cut(s) 1153
BspANI GGCC 1 cut(s) 485
BspCNI CTCAG 2 cut(s) 70, 290
BspPI GGATC 2 cut(s) 429, 727
BspTNI GGTCTC 2 cut(s) 1007, 1013
BsrDI GCAATG 1 cut(s) 1154
BsrI ACTGG 1 cut(s) 1134
BssECI CCNNGG 3 cut(s) 486, 854, 1153
BssMI GATC 3 cut(s) 421, 475, 732
BssSI CACGAG 1 cut(s) 627
BssT1I CCWWGG 3 cut(s) 486, 854, 1153
Bst2BI CACGAG 1 cut(s) 627
Bst4CI ACNGT 3 cut(s) 454, 528, 689
Bst6I CTCTTC 3 cut(s) 185, 767, 1106
BstAPI GCANNNNNTGC 1 cut(s) 947
BstBAI YACGTR 1 cut(s) 500
BstC8I GCNNGC 1 cut(s) 879
BstDEI CTNAG 4 cut(s) 78, 277, 342, 783
BstDSI CCRYGG 1 cut(s) 1153
BstF5I GGATG 2 cut(s) 952, 1163
BstKTI GATC 3 cut(s) 424, 478, 735
BstMAI GTCTC 3 cut(s) 630, 1007, 1013
BstMBI GATC 3 cut(s) 421, 475, 732
BstMWI GCNNNNNNNGC 2 cut(s) 887, 947
BstNSI RCATGY 3 cut(s) 713, 881, 1046
BstSFI CTRYAG 1 cut(s) 673
BstV1I GCAGC 3 cut(s) 116, 681, 775
BstV2I GAAGAC 1 cut(s) 1219
BstX2I RGATCY 1 cut(s) 732
BstXI CCANNNNNNTGG 1 cut(s) 1160
BstYI RGATCY 1 cut(s) 732
BsuI GTATCC 1 cut(s) 243
BsuRI GGCC 1 cut(s) 485
BtgI CCRYGG 1 cut(s) 1153
BtrI CACGTC 1 cut(s) 1217
BtsCI GGATG 2 cut(s) 952, 1163
Cac8I GCNNGC 1 cut(s) 879
CspCI CAANNNNNGTGG 2 cut(s) 1237, 1272
DdeI CTNAG 4 cut(s) 78, 277, 342, 783
DpnI GATC 3 cut(s) 423, 477, 734
DpnII GATC 3 cut(s) 421, 475, 732
DraIII CACNNNGTG 1 cut(s) 1066
DrdI GACNNNNNNGTC 1 cut(s) 1170
DseDI GACNNNNNNGTC 1 cut(s) 1170
EaeI YGGCCR 1 cut(s) 483
Eam1104I CTCTTC 3 cut(s) 185, 767, 1106
EarI CTCTTC 3 cut(s) 185, 767, 1106
Eco130I CCWWGG 3 cut(s) 486, 854, 1153
Eco31I GGTCTC 2 cut(s) 1007, 1013
Eco57I CTGAAG 1 cut(s) 1020
EcoRI GAATTC 2 cut(s) 139, 349
EcoT14I CCWWGG 3 cut(s) 486, 854, 1153
ErhI CCWWGG 3 cut(s) 486, 854, 1153
FalI AAGNNNNNCTT 2 cut(s) 834, 866
FaqI GGGAC 2 cut(s) 445, 1099
FauNDI CATATG 4 cut(s) 134, 259, 480, 886
FblI GTMKAC 1 cut(s) 991
Fnu4HI GCNGC 3 cut(s) 130, 670, 789
FokI GGATG 2 cut(s) 959, 1170
Fsp4HI GCNGC 3 cut(s) 130, 670, 789
FspBI CTAG 2 cut(s) 86, 1251
GluI GCNGC 3 cut(s) 130, 670, 789
GsuI CTGGAG 1 cut(s) 239
HaeIII GGCC 1 cut(s) 485
HindIII AAGCTT 1 cut(s) 843
HinfI GANTC 4 cut(s) 107, 164, 221, 1238
HphI GGTGA 2 cut(s) 386, 919
Hpy166II GTNNAC 5 cut(s) 314, 503, 632, 992, 1163
Hpy188I TCNGA 2 cut(s) 19, 79
Hpy188III TCNNGA 6 cut(s) 104, 168, 328, 521, 581, 629
Hpy8I GTNNAC 5 cut(s) 314, 503, 632, 992, 1163
HpyAV CCTTC 2 cut(s) 436, 980
HpyCH4III ACNGT 3 cut(s) 454, 528, 689
HpyCH4IV ACGT 2 cut(s) 499, 1216
HpyCH4V TGCA 6 cut(s) 51, 132, 662, 669, 791, 890
HpyF10VI GCNNNNNNNGC 2 cut(s) 887, 947
HpyF3I CTNAG 4 cut(s) 78, 277, 342, 783
HpySE526I ACGT 2 cut(s) 499, 1216
Kzo9I GATC 3 cut(s) 421, 475, 732
LpnPI CCDG 5 cut(s) 203, 267, 267, 887, 1147
Lsp1109I GCAGC 3 cut(s) 116, 681, 775
LweI GCATC 3 cut(s) 79, 671, 937
MaeI CTAG 2 cut(s) 86, 1251
MaeII ACGT 2 cut(s) 499, 1216
MaeIII GTNAC 2 cut(s) 574, 1176
MalI GATC 3 cut(s) 423, 477, 734
MboI GATC 3 cut(s) 421, 475, 732
MboII GAAGA 8 cut(s) 202, 316, 383, 485, 784, 1108, 1123, 1224
MfeI CAATTG 1 cut(s) 891
MflI RGATCY 1 cut(s) 732
MlsI TGGCCA 1 cut(s) 485
MluNI TGGCCA 1 cut(s) 485
MlyI GAGTC 2 cut(s) 158, 230
MmeI TCCRAC 1 cut(s) 1223
MnlI CCTC 8 cut(s) 148, 375, 409, 412, 852, 910, 1107, 1255
Mox20I TGGCCA 1 cut(s) 485
MscI TGGCCA 1 cut(s) 485
MslI CAYNNNNRTG 1 cut(s) 1158
Msp20I TGGCCA 1 cut(s) 485
MspA1I CMGCKG 2 cut(s) 281, 672
MunI CAATTG 1 cut(s) 891
MwoI GCNNNNNNNGC 2 cut(s) 887, 947
NcoI CCATGG 1 cut(s) 1153
NdeI CATATG 4 cut(s) 134, 259, 480, 886
NdeII GATC 3 cut(s) 421, 475, 732
NmuCI GTSAC 2 cut(s) 574, 1176
NspI RCATGY 3 cut(s) 713, 881, 1046
PaeI GCATGC 1 cut(s) 881
PfeI GAWTC 2 cut(s) 107, 1238
PkrI GCNGC 3 cut(s) 131, 671, 790
PleI GAGTC 2 cut(s) 158, 229
PpsI GAGTC 2 cut(s) 158, 229
Ppu21I YACGTR 1 cut(s) 500
PshBI ATTAAT 2 cut(s) 429, 974
PsuI RGATCY 1 cut(s) 732
PvuII CAGCTG 2 cut(s) 281, 672
RseI CAYNNNNRTG 1 cut(s) 1158
SatI GCNGC 3 cut(s) 130, 670, 789
Sau3AI GATC 3 cut(s) 421, 475, 732
SchI GAGTC 2 cut(s) 158, 230
SfaNI GCATC 3 cut(s) 79, 671, 937
SfcI CTRYAG 1 cut(s) 673
SmiMI CAYNNNNRTG 1 cut(s) 1158
SmlI CTYRAG 2 cut(s) 166, 579
SmoI CTYRAG 2 cut(s) 166, 579
SpeI ACTAGT 1 cut(s) 1250
SphI GCATGC 1 cut(s) 881
SspI AATATT 2 cut(s) 433, 964
SspMI CTAG 2 cut(s) 86, 1251
StyI CCWWGG 3 cut(s) 486, 854, 1153
TaaI ACNGT 3 cut(s) 454, 528, 689
TaiI ACGT 2 cut(s) 502, 1219
TaqI TCGA 1 cut(s) 224
TaqII GACCGA 1 cut(s) 1031
TfiI GAWTC 2 cut(s) 107, 1238
TseFI GTSAC 2 cut(s) 574, 1176
TseI GCWGC 3 cut(s) 129, 669, 788
Tsp45I GTSAC 2 cut(s) 574, 1176
VspI ATTAAT 2 cut(s) 429, 974
XapI RAATTY 5 cut(s) 71, 139, 234, 349, 362
XceI RCATGY 3 cut(s) 713, 881, 1046
XcmI CCANNNNNNNNNTGG 1 cut(s) 931
XmiI GTMKAC 1 cut(s) 991
XspI CTAG 2 cut(s) 86, 1251
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.