Rw2G025900

Protein FAR1-RELATED SEQUENCE 5-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0000164
Physical Location & Seq
Reverse (-)
39506474 .. 39507844
1371 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G025900.1

Sequence Viewer

Length: 1086 bp
ATGATTTTTGCTCCAATAGTAGGTGTGAACCACCATGGGCAAACCATTGTTTTTGGATGTGCATTTTTGAGCGATGAGACCTTTGATTATGCCCCGAATGTTATTATCATCGATCAAGATCAAGCAATGAGTATGGGAATTGCTCATGTTTTGCCAAACACAATTCACCAGTATTGTAAGACTAATGTAGCATTTATTCAAGATTACTATGAACTTTTTAAGACATGTATATGGGATTCCGAGTGTCCAAAAGAATTTGAAAAGAGATGGTTTGAAGCATTGGACAAAAGTCAACAGACAAATAATGAATGGTTAGAAAAGATGTATGAACTGCGTGGCAGGTGGATTCTAGCAGGGATATCAAGCAGCCAAAGAGTAGACTCTGCACATGCATACTTCAAGCGTTATTGTGATAAAGAAAATACCTTGATGGATTTTAGACATGAAGAATTGGTTGAAGACCAAAAAGATTTGAATGAGACACCAAATTTGAAATTAGGGATGCCAATAGAGTACTTTCAAACTCAGCTTCATGATGGTAATGGTTATATCATAAATGCCGTAATGGAAGATGACAATCGTTGTAGCCTTGTACATGATAAGGTATCAAACATAGTGACATGCAGTTGTAAAATGTTTGAATTTGAAGATTATGGAATTGCCAAAGGAATATATTATGCGAAGATGGACAAGGTTTCAAGAATTCGTAGAGAAAGGTGTAAAGCGAAAGATGGTGCAGATAATTCATTAATAATGAGACACAACGAGGGGACTGAACTTGTGCAAAAGGCATTTGAAGGACTTATGGAGCGAATTAAGAAACTAAATCTTTCTGTTGGGCAAGTATCTATCAACAATTCCTCAATAGGAACTTCTGAAGAGAATCATTTTCTAGATCCTTCTCAAGTGAAGACTAAAGGTAGTGGAAAACGCATAACATCATGGAGAGACAGGAAAAGAAAAGTCAGACATTGTTCTAAATGTCAAAGTACTAAACATACTAAAAAGACATGCACATTTTATCGGTGCGTATTGGTTTATATATGCAAATTCTATGTTTTCTGTTATATACGATTACTCCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE SWIM

Protein Analysis

361

Amino Acids

42.07

Weight (kDa)

8.08

Isoelectric Point (pI)

38.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000164)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02320 FvH4_1g21472 FvH4_2g00813 FvH4_2g02512 FvH4_2g03921 FvH4_2g23460 FvH4_3g29141 FvH4_4g05791 FvH4_4g06321 FvH4_4g15595 FvH4_4g18162 FvH4_4g18163 FvH4_4g29541 FvH4_4g29541 FvH4_4g29541 FvH4_4g29541 FvH4_4g29541 FvH4_5g31093 FvH4_6g01982 FvH4_6g21931 FvH4_6g44691 FvH4_6g48541
prunus_persica Prupe.1G074100_v2.0.a1 Prupe.3G021400_v2.0.a1
pyrus_communis pycom02g18570 pycom14g00670
rosa_chinensis RchiOBHm_Chr1g0379201 RchiOBHm_Chr1g0379361 RchiOBHm_Chr4g0405981 RchiOBHm_Chr5g0073641 RchiOBHm_Chr5g0073651 RchiOBHm_Chr7g0236661
rosa_multiflora Rmu_co8179562.1_g000001 Rmu_co8343647.1_g000001 Rmu_sc0000041.1_g000017 Rmu_sc0000114.1_g000020 Rmu_sc0000286.1_g000006 Rmu_sc0000308.1_g000038 Rmu_sc0000365.1_g000061 Rmu_sc0000365.1_g000062 Rmu_sc0000538.1_g000060 Rmu_sc0000538.1_g000061 Rmu_sc0000586.1_g000016 Rmu_sc0000898.1_g000007 Rmu_sc0000913.1_g000003 Rmu_sc0000913.1_g000004 Rmu_sc0000996.1_g000006 Rmu_sc0000996.1_g000007 Rmu_sc0000998.1_g000003 Rmu_sc0001350.1_g000009 Rmu_sc0002079.1_g000009 Rmu_sc0002200.1_g000013 Rmu_sc0002226.1_g000025 Rmu_sc0002279.1_g000014 Rmu_sc0002478.1_g000014 Rmu_sc0002717.1_g000004 Rmu_sc0002868.1_g000027 Rmu_sc0002889.1_g000043 Rmu_sc0003023.1_g000001 Rmu_sc0003110.1_g000006 Rmu_sc0003226.1_g000028 Rmu_sc0003226.1_g000029 Rmu_sc0003337.1_g000053 Rmu_sc0003558.1_g000007 Rmu_sc0004345.1_g000014 Rmu_sc0004383.1_g000007 Rmu_sc0004888.1_g000021 Rmu_sc0005114.1_g000012 Rmu_sc0005223.1_g000019 Rmu_sc0005223.1_g000020 Rmu_sc0005639.1_g000025 Rmu_sc0005685.1_g000027 Rmu_sc0005992.1_g000002 Rmu_sc0006326.1_g000034 Rmu_sc0006326.1_g000035 Rmu_sc0007390.1_g000012 Rmu_sc0007451.1_g000006 Rmu_sc0007825.1_g000003 Rmu_sc0008600.1_g000023 Rmu_sc0009291.1_g000003 Rmu_sc0012046.1_g000001 Rmu_sc0012046.1_g000002 Rmu_sc0012710.1_g000001 Rmu_sc0015238.1_g000001 Rmu_sc0016125.1_g000003 Rmu_sc0016175.1_g000001 Rmu_sc0016898.1_g000001 Rmu_sc0017323.1_g000010 Rmu_sc0017874.1_g000002 Rmu_sc0019167.1_g000001 Rmu_sc0020815.1_g000006 Rmu_sc0025564.1_g000001 Rmu_sc0026418.1_g000001 Rmu_sc0035188.1_g000002 Rmu_sc0039254.1_g000001 Rmu_ssc0000120.1_g000015 Rmu_ssc0000120.1_g000016 Rmu_ssc0000330.1_g000023 Rmu_ssc0000433.1_g000004
rosa_roxburghii Rroxscaffold_1G00047130 Rroxscaffold_1G00051320 Rroxscaffold_1G00056600 Rroxscaffold_2G00109650 Rroxscaffold_2G00119980 Rroxscaffold_3G00222550 Rroxscaffold_3G00224980 Rroxscaffold_3G00251020 Rroxscaffold_6G00411190 Rroxscaffold_7G00166520 Rroxscaffold_7G00172920 Rroxscaffold_7G00191860 Rroxscaffold_7G00194430
rosa_rugosa Rorug01G0198900 Rorug01G0217300 Rorug01G0244500 Rorug02G0147400 Rorug02G0152200 Rorug02G0595500 Rorug02G0595600 Rorug03G0060500 Rorug03G0203000 Rorug03G0285800 Rorug04G0027200 Rorug04G0027300 Rorug04G0225800 Rorug05G0073400 Rorug05G0213300 Rorug05G0324600 Rorug05G0390900 Rorug05G0391000 Rorug05G0391100 Rorug05G0391200 Rorug05G0462900 Rorug05G0473000 Rorug06G0256500 Rorug07G0199000 Rorug07G0208800 Rorug07G0208800 Rorug07G0316600 Rorug07G0316700
rosa_samantha Rh2BG532400 Rh2CG581900 Rh3CG322600 Rh6AG079900 Rh6AG250800 Rh6AG496300 Rh6BG506100 Rh6CG126000 Rh6CG511700 Rh6DG109400 Rh6DG112700 Rh7CG104500 Rh7CG322000 Rh7CG431500
rosa_wichuraiana Rw0G020410 Rw1G009190 Rw1G014580 Rw1G021000 Rw1G022190 Rw2G025900 Rw2G029920 Rw2G037530 Rw3G018560 Rw3G020560 Rw4G008500 Rw4G022520 Rw5G019030 Rw5G031180 Rw5G044830 Rw6G005010 Rw6G006890 Rw6G011330 Rw6G011380 Rw6G023900 Rw7G028490 Rw7G030170 Rw7G030370 Rw7G032030 Rw7G032040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 330
Acc36I ACCTGC 1 cut(s) 330
AccI GTMKAC 1 cut(s) 378
AclWI GGATC 1 cut(s) 890
AcsI RAATTY 5 cut(s) 254, 487, 641, 702, 1049
AcuI CTGAAG 1 cut(s) 897
AfaI GTAC 3 cut(s) 515, 594, 991
AfiI CCNNNNNNNGG 1 cut(s) 20
AflIII ACRYGT 1 cut(s) 224
AluBI AGCT 1 cut(s) 529
AluI AGCT 1 cut(s) 529
Alw26I GTCTC 4 cut(s) 71, 473, 751, 942
AlwI GGATC 1 cut(s) 890
ApeKI GCWGC 1 cut(s) 366
ApoI RAATTY 5 cut(s) 254, 487, 641, 702, 1049
ArsI GACNNNNNNTTYG 2 cut(s) 472, 504
AseI ATTAAT 1 cut(s) 749
AsuHPI GGTGA 1 cut(s) 158
BbsI GAAGAC 2 cut(s) 465, 917
BbvI GCAGC 1 cut(s) 378
BccI CCATC 5 cut(s) 261, 424, 530, 679, 725
BceAI ACGGC 1 cut(s) 545
BcoDI GTCTC 4 cut(s) 71, 473, 751, 942
BfaI CTAG 2 cut(s) 350, 893
BfuAI ACCTGC 1 cut(s) 330
BisI GCNGC 1 cut(s) 367
BlsI GCNGC 1 cut(s) 368
BmcAI AGTACT 2 cut(s) 515, 991
BmsI GCATC 1 cut(s) 492
BoxI GACNNNNGTC 1 cut(s) 288
BpiI GAAGAC 2 cut(s) 465, 917
BpuEI CTTGAG 1 cut(s) 888
Bsa29I ATCGAT 1 cut(s) 111
BsaBI GATNNNNATC 2 cut(s) 117, 576
BsaI GGTCTC 1 cut(s) 71
BsaJI CCNNGG 1 cut(s) 34
BsaXI ACNNNNNCTCC 1 cut(s) 1062
Bsc4I CCNNNNNNNGG 1 cut(s) 20
Bse1I ACTGG 1 cut(s) 169
Bse3DI GCAATG 1 cut(s) 132
Bse8I GATNNNNATC 2 cut(s) 117, 576
BseCI ATCGAT 1 cut(s) 111
BseDI CCNNGG 1 cut(s) 34
BseGI GGATG 2 cut(s) 62, 507
BseJI GATNNNNATC 2 cut(s) 117, 576
BseLI CCNNNNNNNGG 1 cut(s) 20
BseMI GCAATG 1 cut(s) 132
BseMII CTCAG 1 cut(s) 539
BseNI ACTGG 1 cut(s) 169
BseXI GCAGC 1 cut(s) 378
BsgI GTGCAG 2 cut(s) 369, 756
BshVI ATCGAT 1 cut(s) 111
BslFI GGGAC 1 cut(s) 784
BslI CCNNNNNNNGG 1 cut(s) 20
BsmAI GTCTC 4 cut(s) 71, 473, 751, 942
BsmFI GGGAC 1 cut(s) 784
Bso31I GGTCTC 1 cut(s) 71
Bsp1407I TGTACA 1 cut(s) 592
Bsp143I GATC 3 cut(s) 112, 118, 895
Bsp19I CCATGG 1 cut(s) 34
BspCNI CTCAG 1 cut(s) 538
BspDI ATCGAT 1 cut(s) 111
BspHI TCATGA 1 cut(s) 532
BspMI ACCTGC 1 cut(s) 330
BspPI GGATC 1 cut(s) 890
BspTNI GGTCTC 1 cut(s) 71
BsrDI GCAATG 1 cut(s) 132
BsrGI TGTACA 1 cut(s) 592
BsrI ACTGG 1 cut(s) 169
BssECI CCNNGG 1 cut(s) 34
BssMI GATC 3 cut(s) 112, 118, 895
BssT1I CCWWGG 1 cut(s) 34
Bst6I CTCTTC 1 cut(s) 873
BstAUI TGTACA 1 cut(s) 592
BstDEI CTNAG 1 cut(s) 525
BstDSI CCRYGG 1 cut(s) 34
BstF5I GGATG 2 cut(s) 62, 507
BstKTI GATC 3 cut(s) 115, 121, 898
BstMAI GTCTC 4 cut(s) 71, 473, 751, 942
BstMBI GATC 3 cut(s) 112, 118, 895
BstNSI RCATGY 4 cut(s) 228, 392, 624, 1014
BstPAI GACNNNNGTC 1 cut(s) 288
BstV1I GCAGC 1 cut(s) 378
BstV2I GAAGAC 2 cut(s) 465, 917
BstX2I RGATCY 1 cut(s) 895
BstYI RGATCY 1 cut(s) 895
Bsu15I ATCGAT 1 cut(s) 111
BsuTUI ATCGAT 1 cut(s) 111
BtgI CCRYGG 1 cut(s) 34
BtgZI GCGATG 1 cut(s) 87
BtsCI GGATG 2 cut(s) 62, 507
BveI ACCTGC 1 cut(s) 330
CciI TCATGA 1 cut(s) 532
ClaI ATCGAT 1 cut(s) 111
Csp6I GTAC 3 cut(s) 514, 593, 990
CviJI RGCY 3 cut(s) 369, 529, 588
CviKI_1 RGCY 3 cut(s) 369, 529, 588
CviQI GTAC 3 cut(s) 514, 593, 990
DdeI CTNAG 1 cut(s) 525
DpnI GATC 3 cut(s) 114, 120, 897
DpnII GATC 3 cut(s) 112, 118, 895
Eam1104I CTCTTC 1 cut(s) 873
EarI CTCTTC 1 cut(s) 873
Eco130I CCWWGG 1 cut(s) 34
Eco31I GGTCTC 1 cut(s) 71
Eco32I GATATC 1 cut(s) 360
Eco57I CTGAAG 1 cut(s) 897
EcoRI GAATTC 1 cut(s) 702
EcoRV GATATC 1 cut(s) 360
EcoT14I CCWWGG 1 cut(s) 34
EcoT22I ATGCAT 1 cut(s) 394
ErhI CCWWGG 1 cut(s) 34
FaqI GGGAC 1 cut(s) 784
FblI GTMKAC 1 cut(s) 378
Fnu4HI GCNGC 1 cut(s) 367
FokI GGATG 2 cut(s) 69, 514
Fsp4HI GCNGC 1 cut(s) 367
FspBI CTAG 2 cut(s) 350, 893
GluI GCNGC 1 cut(s) 367
HincII GTYRAC 1 cut(s) 293
HindII GTYRAC 1 cut(s) 293
HinfI GANTC 4 cut(s) 236, 346, 380, 883
HphI GGTGA 1 cut(s) 158
Hpy166II GTNNAC 3 cut(s) 28, 293, 379
Hpy188I TCNGA 3 cut(s) 241, 877, 968
Hpy188III TCNNGA 5 cut(s) 116, 200, 533, 699, 893
Hpy8I GTNNAC 3 cut(s) 28, 293, 379
HpyAV CCTTC 2 cut(s) 791, 909
HpyCH4V TGCA 8 cut(s) 62, 386, 392, 624, 737, 784, 1014, 1047
HpyF3I CTNAG 1 cut(s) 525
Kzo9I GATC 3 cut(s) 112, 118, 895
LmnI GCTCC 2 cut(s) 16, 808
LpnPI CCDG 4 cut(s) 182, 325, 339, 937
Lsp1109I GCAGC 1 cut(s) 378
LweI GCATC 1 cut(s) 492
MaeI CTAG 2 cut(s) 350, 893
MaeIII GTNAC 1 cut(s) 616
MalI GATC 3 cut(s) 114, 120, 897
MboI GATC 3 cut(s) 112, 118, 895
MboII GAAGA 7 cut(s) 458, 470, 581, 659, 694, 890, 922
MflI RGATCY 1 cut(s) 895
MlyI GAGTC 1 cut(s) 374
MnlI CCTC 2 cut(s) 760, 871
Mph1103I ATGCAT 1 cut(s) 394
MseI TTAA 3 cut(s) 219, 749, 816
MslI CAYNNNNRTG 1 cut(s) 229
NcoI CCATGG 1 cut(s) 34
NdeII GATC 3 cut(s) 112, 118, 895
NmuCI GTSAC 1 cut(s) 616
NsiI ATGCAT 1 cut(s) 394
NspI RCATGY 4 cut(s) 228, 392, 624, 1014
PagI TCATGA 1 cut(s) 532
PaqCI CACCTGC 1 cut(s) 330
PciI ACATGT 1 cut(s) 224
PfeI GAWTC 3 cut(s) 236, 346, 883
PkrI GCNGC 1 cut(s) 368
PleI GAGTC 1 cut(s) 374
PpsI GAGTC 1 cut(s) 374
PscI ACATGT 1 cut(s) 224
PshAI GACNNNNGTC 1 cut(s) 288
PshBI ATTAAT 1 cut(s) 749
PsuI RGATCY 1 cut(s) 895
RsaI GTAC 3 cut(s) 515, 594, 991
RsaNI GTAC 3 cut(s) 514, 593, 990
RseI CAYNNNNRTG 1 cut(s) 229
SaqAI TTAA 3 cut(s) 219, 749, 816
SatI GCNGC 1 cut(s) 367
Sau3AI GATC 3 cut(s) 112, 118, 895
ScaI AGTACT 2 cut(s) 515, 991
SchI GAGTC 1 cut(s) 374
SetI ASST 9 cut(s) 25, 83, 344, 428, 531, 606, 696, 719, 922
SfaNI GCATC 1 cut(s) 492
SmiMI CAYNNNNRTG 1 cut(s) 229
SmlI CTYRAG 1 cut(s) 903
SmoI CTYRAG 1 cut(s) 903
SspMI CTAG 2 cut(s) 350, 893
StyI CCWWGG 1 cut(s) 34
TaqI TCGA 1 cut(s) 111
TatI WGTACW 3 cut(s) 513, 592, 989
TfiI GAWTC 3 cut(s) 236, 346, 883
Tru1I TTAA 3 cut(s) 219, 749, 816
Tru9I TTAA 3 cut(s) 219, 749, 816
TseFI GTSAC 1 cut(s) 616
TseI GCWGC 1 cut(s) 366
Tsp45I GTSAC 1 cut(s) 616
TspDTI ATGAA 6 cut(s) 225, 321, 342, 459, 521, 735
VspI ATTAAT 1 cut(s) 749
XapI RAATTY 5 cut(s) 254, 487, 641, 702, 1049
XbaI TCTAGA 1 cut(s) 892
XceI RCATGY 4 cut(s) 228, 392, 624, 1014
XmiI GTMKAC 1 cut(s) 378
XspI CTAG 2 cut(s) 350, 893
ZrmI AGTACT 2 cut(s) 515, 991
Zsp2I ATGCAT 1 cut(s) 394
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.