Rmu_sc0004345.1_g000014

Protein FAR1-RELATED SEQUENCE 5-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004345.1
OG0000164
Physical Location & Seq
Reverse (-)
36163 .. 43166
7004 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004345.1_g000014.1.cds

Sequence Viewer

Length: 1158 bp
atgccaatgccggagcttccatctccagaagtcgatctcgctgatgttgagtttaggtttcgggaaaaaaaaaaaccgcctagaccgcctaagtggccgcctaaatcctatctgcctaaggcttccgatttgccattagtcgcctcggtctcctgtcgcccagcgcctaggctgcctgggcagacatatgcaaaagaagcagggtttagtattagaagtcattctaatgtgaccagcaaagataagaaacaacttatgaggaaggagtatgtctgttataagcaaggagattccaaagttgaaggagaaaagcgtaagagaggattaccaaaagtgggttgtaaagcgagaattgcagttgtgagaaagaaggagtctggaagatatgcaatctctgtatttgttgaggctcacaaccatccattaacaagcccgcctagagtacatttgttgagatctcactgtggtgtatcagaagttaacacagttctatcacagcaaataagcttggtgaatgtggagaaacataaacagtttgaattctttggtgttcaggcaggtggcattcaaaatattggttttatacagcgtgatctatataattatggaagaacttgtcgtgaagagaagaaggggcgtgatggagatctactgtacatgcattttgagaatgagaaagaaaaagattattcttttgtctatacaatggatggagatgaggaaaacagagtaacacggtgcttttgggctgactcaatttcaagacgagcttatagcttttatggagatgtagttatctttgatactacatacaacacaaatcggtatggaatgatttttgcaccattcagtggtgttaacaatcatgggcagacaatcatctttgcttgtgcattcttgaatgatgagacaatcgatacttttgtttggttattcaaggaatttctaaatgctatgccagaagatgcaccagaaaatgcccccaagatgatcattaccaaccaagatcctgctatgactaaagccatttcagaagcactcccacaaacatttcatagatattgcagagcattgggaaacactcttgcccctattcaaaaccaatctactgcagctatttctgaacaaatcaaacgcaagcaaaaccaaaaccagtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE SWIM

Protein Analysis

385

Amino Acids

43.96

Weight (kDa)

9.19

Isoelectric Point (pI)

46.93

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000164)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02320 FvH4_1g21472 FvH4_2g00813 FvH4_2g02512 FvH4_2g03921 FvH4_2g23460 FvH4_3g29141 FvH4_4g05791 FvH4_4g06321 FvH4_4g15595 FvH4_4g18162 FvH4_4g18163 FvH4_4g29541 FvH4_4g29541 FvH4_4g29541 FvH4_4g29541 FvH4_4g29541 FvH4_5g31093 FvH4_6g01982 FvH4_6g21931 FvH4_6g44691 FvH4_6g48541
prunus_persica Prupe.1G074100_v2.0.a1 Prupe.3G021400_v2.0.a1
pyrus_communis pycom02g18570 pycom14g00670
rosa_chinensis RchiOBHm_Chr1g0379201 RchiOBHm_Chr1g0379361 RchiOBHm_Chr4g0405981 RchiOBHm_Chr5g0073641 RchiOBHm_Chr5g0073651 RchiOBHm_Chr7g0236661
rosa_multiflora Rmu_co8179562.1_g000001 Rmu_co8343647.1_g000001 Rmu_sc0000041.1_g000017 Rmu_sc0000114.1_g000020 Rmu_sc0000286.1_g000006 Rmu_sc0000308.1_g000038 Rmu_sc0000365.1_g000061 Rmu_sc0000365.1_g000062 Rmu_sc0000538.1_g000060 Rmu_sc0000538.1_g000061 Rmu_sc0000586.1_g000016 Rmu_sc0000898.1_g000007 Rmu_sc0000913.1_g000003 Rmu_sc0000913.1_g000004 Rmu_sc0000996.1_g000006 Rmu_sc0000996.1_g000007 Rmu_sc0000998.1_g000003 Rmu_sc0001350.1_g000009 Rmu_sc0002079.1_g000009 Rmu_sc0002200.1_g000013 Rmu_sc0002226.1_g000025 Rmu_sc0002279.1_g000014 Rmu_sc0002478.1_g000014 Rmu_sc0002717.1_g000004 Rmu_sc0002868.1_g000027 Rmu_sc0002889.1_g000043 Rmu_sc0003023.1_g000001 Rmu_sc0003110.1_g000006 Rmu_sc0003226.1_g000028 Rmu_sc0003226.1_g000029 Rmu_sc0003337.1_g000053 Rmu_sc0003558.1_g000007 Rmu_sc0004345.1_g000014 Rmu_sc0004383.1_g000007 Rmu_sc0004888.1_g000021 Rmu_sc0005114.1_g000012 Rmu_sc0005223.1_g000019 Rmu_sc0005223.1_g000020 Rmu_sc0005639.1_g000025 Rmu_sc0005685.1_g000027 Rmu_sc0005992.1_g000002 Rmu_sc0006326.1_g000034 Rmu_sc0006326.1_g000035 Rmu_sc0007390.1_g000012 Rmu_sc0007451.1_g000006 Rmu_sc0007825.1_g000003 Rmu_sc0008600.1_g000023 Rmu_sc0009291.1_g000003 Rmu_sc0012046.1_g000001 Rmu_sc0012046.1_g000002 Rmu_sc0012710.1_g000001 Rmu_sc0015238.1_g000001 Rmu_sc0016125.1_g000003 Rmu_sc0016175.1_g000001 Rmu_sc0016898.1_g000001 Rmu_sc0017323.1_g000010 Rmu_sc0017874.1_g000002 Rmu_sc0019167.1_g000001 Rmu_sc0020815.1_g000006 Rmu_sc0025564.1_g000001 Rmu_sc0026418.1_g000001 Rmu_sc0035188.1_g000002 Rmu_sc0039254.1_g000001 Rmu_ssc0000120.1_g000015 Rmu_ssc0000120.1_g000016 Rmu_ssc0000330.1_g000023 Rmu_ssc0000433.1_g000004
rosa_roxburghii Rroxscaffold_1G00047130 Rroxscaffold_1G00051320 Rroxscaffold_1G00056600 Rroxscaffold_2G00109650 Rroxscaffold_2G00119980 Rroxscaffold_3G00222550 Rroxscaffold_3G00224980 Rroxscaffold_3G00251020 Rroxscaffold_6G00411190 Rroxscaffold_7G00166520 Rroxscaffold_7G00172920 Rroxscaffold_7G00191860 Rroxscaffold_7G00194430
rosa_rugosa Rorug01G0198900 Rorug01G0217300 Rorug01G0244500 Rorug02G0147400 Rorug02G0152200 Rorug02G0595500 Rorug02G0595600 Rorug03G0060500 Rorug03G0203000 Rorug03G0285800 Rorug04G0027200 Rorug04G0027300 Rorug04G0225800 Rorug05G0073400 Rorug05G0213300 Rorug05G0324600 Rorug05G0390900 Rorug05G0391000 Rorug05G0391100 Rorug05G0391200 Rorug05G0462900 Rorug05G0473000 Rorug06G0256500 Rorug07G0199000 Rorug07G0208800 Rorug07G0208800 Rorug07G0316600 Rorug07G0316700
rosa_samantha Rh2BG532400 Rh2CG581900 Rh3CG322600 Rh6AG079900 Rh6AG250800 Rh6AG496300 Rh6BG506100 Rh6CG126000 Rh6CG511700 Rh6DG109400 Rh6DG112700 Rh7CG104500 Rh7CG322000 Rh7CG431500
rosa_wichuraiana Rw0G020410 Rw1G009190 Rw1G014580 Rw1G021000 Rw1G022190 Rw2G025900 Rw2G029920 Rw2G037530 Rw3G018560 Rw3G020560 Rw4G008500 Rw4G022520 Rw5G019030 Rw5G031180 Rw5G044830 Rw6G005010 Rw6G006890 Rw6G011330 Rw6G011380 Rw6G023900 Rw7G028490 Rw7G030170 Rw7G030370 Rw7G032030 Rw7G032040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 279
AarI CACCTGC 1 cut(s) 548
Acc36I ACCTGC 1 cut(s) 548
AccB7I CCANNNNNTGG 1 cut(s) 851
AciI CCGC 4 cut(s) 77, 86, 98, 434
AclWI GGATC 1 cut(s) 1001
AcoI YGGCCR 1 cut(s) 95
AcsI RAATTY 2 cut(s) 539, 941
AfaI GTAC 2 cut(s) 444, 656
AfiI CCNNNNNNNGG 2 cut(s) 335, 851
AgsI TTSAA 7 cut(s) 302, 539, 569, 762, 901, 937, 1097
AjnI CCWGG 1 cut(s) 175
AleI CACNNNNGTG 1 cut(s) 465
AluBI AGCT 5 cut(s) 16, 507, 770, 777, 1115
AluI AGCT 5 cut(s) 16, 507, 770, 777, 1115
Alw26I GTCTC 2 cut(s) 154, 902
AlwI GGATC 1 cut(s) 1001
AoxI GGCC 1 cut(s) 95
ApeKI GCWGC 2 cut(s) 172, 1112
ApoI RAATTY 2 cut(s) 539, 941
Asp700I GAANNNNTTC 1 cut(s) 220
AspA2I CCTAGG 1 cut(s) 167
AspLEI GCGC 1 cut(s) 166
AsuHPI GGTGA 1 cut(s) 523
AvrII CCTAGG 1 cut(s) 167
AxyI CCTNAGG 1 cut(s) 117
BaeI ACNNNNGTAYC 2 cut(s) 909, 942
BbvI GCAGC 2 cut(s) 159, 1124
BccI CCATC 4 cut(s) 28, 426, 635, 704
BciT130I CCWGG 1 cut(s) 177
BclI TGATCA 1 cut(s) 990
BcoDI GTCTC 2 cut(s) 154, 902
BfaI CTAG 3 cut(s) 81, 168, 438
BfmI CTRYAG 1 cut(s) 1110
BfoI RGCGCY 1 cut(s) 167
BfuAI ACCTGC 1 cut(s) 548
BglI GCCNNNNNGGC 1 cut(s) 94
BglII AGATCT 2 cut(s) 455, 646
BisI GCNGC 3 cut(s) 98, 173, 1113
BlnI CCTAGG 1 cut(s) 167
BlsI GCNGC 3 cut(s) 99, 174, 1114
Bme1390I CCNGG 1 cut(s) 177
BmrFI CCNGG 1 cut(s) 177
BmsI GCATC 1 cut(s) 955
BpmI CTGGAG 1 cut(s) 9
Bsa29I ATCGAT 1 cut(s) 915
BsaBI GATNNNNATC 1 cut(s) 645
BsaI GGTCTC 1 cut(s) 154
BsaJI CCNNGG 3 cut(s) 144, 167, 176
BsaXI ACNNNNNCTCC 2 cut(s) 777, 807
Bsc4I CCNNNNNNNGG 2 cut(s) 335, 851
Bse1I ACTGG 1 cut(s) 1153
Bse21I CCTNAGG 1 cut(s) 117
Bse8I GATNNNNATC 1 cut(s) 645
BseBI CCWGG 1 cut(s) 177
BseCI ATCGAT 1 cut(s) 915
BseDI CCNNGG 3 cut(s) 144, 167, 176
BseGI GGATG 2 cut(s) 418, 715
BseJI GATNNNNATC 1 cut(s) 645
BseLI CCNNNNNNNGG 2 cut(s) 335, 851
BseNI ACTGG 1 cut(s) 1153
BseXI GCAGC 2 cut(s) 159, 1124
BseYI CCCAGC 1 cut(s) 160
BshFI GGCC 1 cut(s) 97
BshVI ATCGAT 1 cut(s) 915
BsiSI CCGG 1 cut(s) 11
BslI CCNNNNNNNGG 2 cut(s) 335, 851
BsmAI GTCTC 2 cut(s) 154, 902
BsmI GAATGC 2 cut(s) 564, 893
BsnI GGCC 1 cut(s) 97
Bso31I GGTCTC 1 cut(s) 154
Bsp1407I TGTACA 1 cut(s) 654
Bsp143I GATC 6 cut(s) 34, 455, 592, 646, 990, 1006
BspACI CCGC 4 cut(s) 77, 86, 98, 434
BspANI GGCC 1 cut(s) 97
BspDI ATCGAT 1 cut(s) 915
BspMAI CTGCAG 1 cut(s) 1114
BspMI ACCTGC 1 cut(s) 548
BspPI GGATC 1 cut(s) 1001
BspTNI GGTCTC 1 cut(s) 154
BsrGI TGTACA 1 cut(s) 654
BsrI ACTGG 1 cut(s) 1153
BssECI CCNNGG 3 cut(s) 144, 167, 176
BssMI GATC 6 cut(s) 34, 455, 592, 646, 990, 1006
BssT1I CCWWGG 1 cut(s) 167
Bst2UI CCWGG 1 cut(s) 177
Bst4CI ACNGT 5 cut(s) 464, 487, 534, 654, 738
Bst6I CTCTTC 1 cut(s) 618
BstAUI TGTACA 1 cut(s) 654
BstC8I GCNNGC 2 cut(s) 434, 1139
BstDEI CTNAG 2 cut(s) 90, 117
BstF5I GGATG 2 cut(s) 418, 715
BstH2I RGCGCY 1 cut(s) 167
BstHHI GCGC 1 cut(s) 166
BstKTI GATC 6 cut(s) 37, 458, 595, 649, 993, 1009
BstMAI GTCTC 2 cut(s) 154, 902
BstMBI GATC 6 cut(s) 34, 455, 592, 646, 990, 1006
BstMWI GCNNNNNNNGC 6 cut(s) 85, 94, 172, 178, 197, 353
BstNI CCWGG 1 cut(s) 177
BstNSI RCATGY 1 cut(s) 661
BstSCI CCNGG 1 cut(s) 175
BstSFI CTRYAG 1 cut(s) 1110
BstV1I GCAGC 2 cut(s) 159, 1124
BstX2I RGATCY 3 cut(s) 455, 646, 1006
BstYI RGATCY 3 cut(s) 455, 646, 1006
Bsu15I ATCGAT 1 cut(s) 915
Bsu36I CCTNAGG 1 cut(s) 117
BsuRI GGCC 1 cut(s) 97
BsuTUI ATCGAT 1 cut(s) 915
BtsCI GGATG 2 cut(s) 418, 715
BtsIMutI CAGTG 2 cut(s) 460, 856
BveI ACCTGC 1 cut(s) 548
Cac8I GCNNGC 2 cut(s) 434, 1139
CfoI GCGC 1 cut(s) 166
ClaI ATCGAT 1 cut(s) 915
Csp6I GTAC 2 cut(s) 443, 655
CviAII CATG 2 cut(s) 658, 866
CviQI GTAC 2 cut(s) 443, 655
DdeI CTNAG 2 cut(s) 90, 117
DpnI GATC 6 cut(s) 36, 457, 594, 648, 992, 1008
DpnII GATC 6 cut(s) 34, 455, 592, 646, 990, 1006
EaeI YGGCCR 1 cut(s) 95
Eam1104I CTCTTC 1 cut(s) 618
EarI CTCTTC 1 cut(s) 618
Eco130I CCWWGG 1 cut(s) 167
Eco31I GGTCTC 1 cut(s) 154
Eco81I CCTNAGG 1 cut(s) 117
EcoRI GAATTC 1 cut(s) 539
EcoRII CCWGG 1 cut(s) 175
EcoT14I CCWWGG 1 cut(s) 167
EcoT22I ATGCAT 1 cut(s) 663
ErhI CCWWGG 1 cut(s) 167
FaeI CATG 2 cut(s) 661, 869
FalI AAGNNNNNCTT 2 cut(s) 754, 786
FatI CATG 2 cut(s) 657, 865
FauI CCCGC 1 cut(s) 441
FauNDI CATATG 1 cut(s) 187
FbaI TGATCA 1 cut(s) 990
Fnu4HI GCNGC 3 cut(s) 98, 173, 1113
FokI GGATG 2 cut(s) 405, 722
Fsp4HI GCNGC 3 cut(s) 98, 173, 1113
FspBI CTAG 3 cut(s) 81, 168, 438
GlaI GCGC 1 cut(s) 165
GluI GCNGC 3 cut(s) 98, 173, 1113
GsaI CCCAGC 1 cut(s) 164
GsuI CTGGAG 1 cut(s) 9
HaeII RGCGCY 1 cut(s) 167
HaeIII GGCC 1 cut(s) 97
HapII CCGG 1 cut(s) 11
HhaI GCGC 1 cut(s) 166
Hin1II CATG 2 cut(s) 661, 869
Hin6I GCGC 1 cut(s) 164
HinP1I GCGC 1 cut(s) 164
HincII GTYRAC 2 cut(s) 481, 859
HindII GTYRAC 2 cut(s) 481, 859
HindIII AAGCTT 1 cut(s) 505
HinfI GANTC 3 cut(s) 290, 374, 752
HpaI GTTAAC 2 cut(s) 481, 859
HpaII CCGG 1 cut(s) 11
HphI GGTGA 1 cut(s) 523
Hpy166II GTNNAC 2 cut(s) 481, 859
Hpy188I TCNGA 4 cut(s) 127, 475, 1033, 1123
Hpy188III TCNNGA 6 cut(s) 26, 62, 378, 620, 762, 898
Hpy8I GTNNAC 2 cut(s) 481, 859
HpyAV CCTTC 4 cut(s) 256, 296, 364, 625
HpyCH4III ACNGT 5 cut(s) 464, 487, 534, 654, 738
HpyCH4V TGCA 9 cut(s) 191, 356, 389, 661, 842, 893, 968, 1065, 1112
HpyF10VI GCNNNNNNNGC 6 cut(s) 85, 94, 172, 178, 197, 353
HpyF3I CTNAG 2 cut(s) 90, 117
Hsp92II CATG 2 cut(s) 661, 869
HspAI GCGC 1 cut(s) 164
Ksp22I TGATCA 1 cut(s) 990
KspAI GTTAAC 2 cut(s) 481, 859
Kzo9I GATC 6 cut(s) 34, 455, 592, 646, 990, 1006
LmnI GCTCC 1 cut(s) 13
Lsp1109I GCAGC 2 cut(s) 159, 1124
LweI GCATC 1 cut(s) 955
MaeI CTAG 3 cut(s) 81, 168, 438
MaeIII GTNAC 2 cut(s) 229, 730
MalI GATC 6 cut(s) 36, 457, 594, 648, 992, 1008
MboI GATC 6 cut(s) 34, 455, 592, 646, 990, 1006
MboII GAAGA 5 cut(s) 393, 621, 635, 640, 974
MflI RGATCY 3 cut(s) 455, 646, 1006
MluCI AATT 5 cut(s) 351, 539, 601, 756, 941
MlyI GAGTC 2 cut(s) 383, 746
MnlI CCTC 5 cut(s) 154, 252, 314, 400, 712
Mph1103I ATGCAT 1 cut(s) 663
MroXI GAANNNNTTC 1 cut(s) 220
MseI TTAA 3 cut(s) 425, 480, 858
MslI CAYNNNNRTG 2 cut(s) 225, 465
MspI CCGG 1 cut(s) 11
MspR9I CCNGG 1 cut(s) 177
Mva1269I GAATGC 2 cut(s) 564, 893
MvaI CCWGG 1 cut(s) 177
MwoI GCNNNNNNNGC 6 cut(s) 85, 94, 172, 178, 197, 353
NdeI CATATG 1 cut(s) 187
NdeII GATC 6 cut(s) 34, 455, 592, 646, 990, 1006
NlaIII CATG 2 cut(s) 661, 869
NmuCI GTSAC 1 cut(s) 229
NsiI ATGCAT 1 cut(s) 663
NspI RCATGY 1 cut(s) 661
OliI CACNNNNGTG 1 cut(s) 465
PaqCI CACCTGC 1 cut(s) 548
PctI GAATGC 2 cut(s) 564, 893
PdmI GAANNNNTTC 1 cut(s) 220
PfeI GAWTC 1 cut(s) 290
PflMI CCANNNNNTGG 1 cut(s) 851
PkrI GCNGC 3 cut(s) 99, 174, 1114
PleI GAGTC 2 cut(s) 382, 746
PpsI GAGTC 2 cut(s) 382, 746
PsiI TTATAA 1 cut(s) 279
Psp6I CCWGG 1 cut(s) 175
PspFI CCCAGC 1 cut(s) 160
PspGI CCWGG 1 cut(s) 175
PstI CTGCAG 1 cut(s) 1114
PsuI RGATCY 3 cut(s) 455, 646, 1006
RsaI GTAC 2 cut(s) 444, 656
RsaNI GTAC 2 cut(s) 443, 655
RseI CAYNNNNRTG 2 cut(s) 225, 465
SaqAI TTAA 3 cut(s) 425, 480, 858
SatI GCNGC 3 cut(s) 98, 173, 1113
Sau3AI GATC 6 cut(s) 34, 455, 592, 646, 990, 1006
SchI GAGTC 2 cut(s) 383, 746
ScrFI CCNGG 1 cut(s) 177
SetI ASST 7 cut(s) 18, 59, 509, 562, 772, 779, 1117
SfaNI GCATC 1 cut(s) 955
SfcI CTRYAG 1 cut(s) 1110
SmiMI CAYNNNNRTG 2 cut(s) 225, 465
Sse9I AATT 5 cut(s) 351, 539, 601, 756, 941
SsiI CCGC 4 cut(s) 77, 86, 98, 434
SspI AATATT 1 cut(s) 574
SspMI CTAG 3 cut(s) 81, 168, 438
StyD4I CCNGG 1 cut(s) 175
StyI CCWWGG 1 cut(s) 167
TaaI ACNGT 5 cut(s) 464, 487, 534, 654, 738
TaqI TCGA 2 cut(s) 33, 915
TaqII GACCGA 1 cut(s) 136
TasI AATT 5 cut(s) 351, 539, 601, 756, 941
TatI WGTACW 2 cut(s) 442, 654
TauI GCSGC 1 cut(s) 100
TfiI GAWTC 1 cut(s) 290
Tru1I TTAA 3 cut(s) 425, 480, 858
Tru9I TTAA 3 cut(s) 425, 480, 858
TscAI CASTG 2 cut(s) 467, 856
TseFI GTSAC 1 cut(s) 229
TseI GCWGC 2 cut(s) 172, 1112
Tsp45I GTSAC 1 cut(s) 229
TspDTI ATGAA 1 cut(s) 1043
TspRI CASTG 2 cut(s) 467, 856
Van91I CCANNNNNTGG 1 cut(s) 851
XapI RAATTY 2 cut(s) 539, 941
XceI RCATGY 1 cut(s) 661
XmaJI CCTAGG 1 cut(s) 167
XmnI GAANNNNTTC 1 cut(s) 220
XspI CTAG 3 cut(s) 81, 168, 438
Zsp2I ATGCAT 1 cut(s) 663
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.