Rorug04G0225800

Protein FAR1-RELATED SEQUENCE 5-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0000164
Physical Location & Seq
Forward (+)
38809004 .. 38815080
6077 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0225800.1

Sequence Viewer

Length: 2121 bp
ATGGAGCTGCCGAGGCGCCAAGATCAGAGCCAATCGGAGAGGAAGGGGCAGAAGCGGAAACTGGAAGAGGAAATCGGAGAGGAGCGAGAGATCACGGTGCAGCAGTCCGGCGACGCCAGAAAAGCCATACTGCTTCAGGTCGCCGAGCAGGTTCAAGTTCTTGACTCTTCTTTTTCCTGGAGAGAAGCTGATCGAAACGCTTCCAAGCGGGCCACTCACGTCCTCGCCGAGCTCGCCAAGAACGAGGACGTAGTGAACGTCATCGTTGAAGGCGGTGCGGTTCCGGCTTTGGTGAAACATCTGCAAGCGCCGCCGTGCAGCGAGGTCGACCGGAGCTCTTCGAAGCACTGCGAACACGAGGTTGAGAAGGGCAGTGCCTTTGCACTAGGCCTTCTTGCCGTTAAGCCCGAGCATCAACAACTCATTGTTGACAATGGTGCATTGTCTCATCTAGTAGATTTGTTGAAGAGGCACAAGGATAGTCATGTAACTCGACCTTTGTATAGCGTCATTCGTAGAGCTGCTGATGCCATCACCAATCTCGCTCATGAAAACAGCAGCATTAAAACCCGTGTCAGGATAGAAGGTGGAATTCCACCTCTAGTTGAGTTGCTTGAATTTGCCGATACAAAGGTGCAAAGAGCAGCTGCTGGAGCGTTACGAACCCTCGCATTTAAAAATGATGAGAATAAGAATCAGATTGTTGAATGCAATGCTCTTCCTACCCTCATTTTAATGCTTCGATCTGAAGATGCTGCTATACATTACGAAGCGGTTGGTGTAATTGGAAATCTAGTTCACTCTTCTCCAAACATAAAGAAAGAGGTTCTTCTTGCGGGAGCTTTACAACCTGTTATTGGATTGCTTAGTTCCTGCTGCTTTGAGAGCCAAAGAGAGGCAGCTTTGCTACTTGGACAATTTGCTGCAACTGATTCAGATTGCAAGGTTCACATTGTACAGAGGGGTGCTGTCCGACCTTTGATTGAGATGCTTCAATCCCCAGATGTACAACTCAGGGAGATGTCAGCTTTTGCTTTGGGGAGGTTGGCACAGGACTCACACAACCAAGCTGGTATTGCTCATAATGGTGGTTTATTGCCATTGTTGAAACTTTTGGATTCAAAAAATGGGTCTCTGCAACACAATGCTGCATTTACCCTTTATGGCCTTGCAGATAATGAGGATAATGTGTCCGATTTTATTAGGGTTGGTGGTGTTCAGAAGTTGCAGGATGGAGAATTTATTTTCCAAGCTACAAAGGATTGTGTGACCAAAACATTGAAAAGATTAGAGGAGAAGATTCATGCACGAGTTTTGTCGCATTTGTTATACTTGATGCGTGTAGCAGAGAGAAATGTCCAAAGACGTGTTGCTTTGGCTTTTGCTCATCTTTGCTCCCCAGAGGATCTCAGAACCATTTTCATCGATAACAATGGTTTGGAATTGCTTCTTGGGCTTCTTGGTTCTAGTAGCCCCAAACAGCAGCTTGATGGTGCTATGGCTCTGTACAAGTTGGCCAACAAAGCCATGACTCTTTCTCCTGTGGATGCAGCTCCTCCATCTCCAACACCACAGGTTTATCTAGGGGAGCAGTATGTAAACAACCCTACGCTGTCCGATGTTACGTTTTTAGTTGAAGGTAGACGGTTCTATGCTCACAGAATTTGCCTGCTTGCTTCTTCAGATGCTTTTCGTGCAATGTTTGATGGTGGTTACCGGGAGAAGGATGCAAGGGACATTGAAATACCAAATATTAGATGGGAGGTTTTTGAGTTGATGATGAGATTTATATACACCGGATCAGTAGACATTACTTTGGATATTGCTCAAGATCTCCTCAGAGCTGCAGATCAGTATCTTTTGGAGGGACTCAAGCGGCTTTGTGAGTATTCAATAGCACAGGACATATCTTTGGAGAATGTTTCAAACATGTATGAACTTTCAGAAGCCTTCCATGCAATGTCATTACGGCAAACATGTATTTTGTTTATCTTGGAGCAGTTCGAAAAATTGAGTGCTAGACCAGGGCACTGTGAACTGATCAAGAATATATTGGATGAGATCAGATCTTACTTTACTAAAGCACTCACTAAGCCTAACCCACATAACTTGCGGCTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE SWIM

Protein Analysis

706

Amino Acids

78.57

Weight (kDa)

6.15

Isoelectric Point (pI)

50.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ARM_ARMC5 PF24768 169 - 383 5.9e-16 ARMC5
ARM_PUB PF25598 174 - 409 1.1e-06 Plant U-box protein ARM repeat region
Arm PF00514 192 - 224 5.3e-07 Armadillo/beta-catenin-like repeat
Arm PF00514 227 - 266 1.9e-07 Armadillo/beta-catenin-like repeat
BTB PF00651 534 - 634 3.4e-25 BTB/POZ domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000164)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02320 FvH4_1g21472 FvH4_2g00813 FvH4_2g02512 FvH4_2g03921 FvH4_2g23460 FvH4_3g29141 FvH4_4g05791 FvH4_4g06321 FvH4_4g15595 FvH4_4g18162 FvH4_4g18163 FvH4_4g29541 FvH4_4g29541 FvH4_4g29541 FvH4_4g29541 FvH4_4g29541 FvH4_5g31093 FvH4_6g01982 FvH4_6g21931 FvH4_6g44691 FvH4_6g48541
prunus_persica Prupe.1G074100_v2.0.a1 Prupe.3G021400_v2.0.a1
pyrus_communis pycom02g18570 pycom14g00670
rosa_chinensis RchiOBHm_Chr1g0379201 RchiOBHm_Chr1g0379361 RchiOBHm_Chr4g0405981 RchiOBHm_Chr5g0073641 RchiOBHm_Chr5g0073651 RchiOBHm_Chr7g0236661
rosa_multiflora Rmu_co8179562.1_g000001 Rmu_co8343647.1_g000001 Rmu_sc0000041.1_g000017 Rmu_sc0000114.1_g000020 Rmu_sc0000286.1_g000006 Rmu_sc0000308.1_g000038 Rmu_sc0000365.1_g000061 Rmu_sc0000365.1_g000062 Rmu_sc0000538.1_g000060 Rmu_sc0000538.1_g000061 Rmu_sc0000586.1_g000016 Rmu_sc0000898.1_g000007 Rmu_sc0000913.1_g000003 Rmu_sc0000913.1_g000004 Rmu_sc0000996.1_g000006 Rmu_sc0000996.1_g000007 Rmu_sc0000998.1_g000003 Rmu_sc0001350.1_g000009 Rmu_sc0002079.1_g000009 Rmu_sc0002200.1_g000013 Rmu_sc0002226.1_g000025 Rmu_sc0002279.1_g000014 Rmu_sc0002478.1_g000014 Rmu_sc0002717.1_g000004 Rmu_sc0002868.1_g000027 Rmu_sc0002889.1_g000043 Rmu_sc0003023.1_g000001 Rmu_sc0003110.1_g000006 Rmu_sc0003226.1_g000028 Rmu_sc0003226.1_g000029 Rmu_sc0003337.1_g000053 Rmu_sc0003558.1_g000007 Rmu_sc0004345.1_g000014 Rmu_sc0004383.1_g000007 Rmu_sc0004888.1_g000021 Rmu_sc0005114.1_g000012 Rmu_sc0005223.1_g000019 Rmu_sc0005223.1_g000020 Rmu_sc0005639.1_g000025 Rmu_sc0005685.1_g000027 Rmu_sc0005992.1_g000002 Rmu_sc0006326.1_g000034 Rmu_sc0006326.1_g000035 Rmu_sc0007390.1_g000012 Rmu_sc0007451.1_g000006 Rmu_sc0007825.1_g000003 Rmu_sc0008600.1_g000023 Rmu_sc0009291.1_g000003 Rmu_sc0012046.1_g000001 Rmu_sc0012046.1_g000002 Rmu_sc0012710.1_g000001 Rmu_sc0015238.1_g000001 Rmu_sc0016125.1_g000003 Rmu_sc0016175.1_g000001 Rmu_sc0016898.1_g000001 Rmu_sc0017323.1_g000010 Rmu_sc0017874.1_g000002 Rmu_sc0019167.1_g000001 Rmu_sc0020815.1_g000006 Rmu_sc0025564.1_g000001 Rmu_sc0026418.1_g000001 Rmu_sc0035188.1_g000002 Rmu_sc0039254.1_g000001 Rmu_ssc0000120.1_g000015 Rmu_ssc0000120.1_g000016 Rmu_ssc0000330.1_g000023 Rmu_ssc0000433.1_g000004
rosa_roxburghii Rroxscaffold_1G00047130 Rroxscaffold_1G00051320 Rroxscaffold_1G00056600 Rroxscaffold_2G00109650 Rroxscaffold_2G00119980 Rroxscaffold_3G00222550 Rroxscaffold_3G00224980 Rroxscaffold_3G00251020 Rroxscaffold_6G00411190 Rroxscaffold_7G00166520 Rroxscaffold_7G00172920 Rroxscaffold_7G00191860 Rroxscaffold_7G00194430
rosa_rugosa Rorug01G0198900 Rorug01G0217300 Rorug01G0244500 Rorug02G0147400 Rorug02G0152200 Rorug02G0595500 Rorug02G0595600 Rorug03G0060500 Rorug03G0203000 Rorug03G0285800 Rorug04G0027200 Rorug04G0027300 Rorug04G0225800 Rorug05G0073400 Rorug05G0213300 Rorug05G0324600 Rorug05G0390900 Rorug05G0391000 Rorug05G0391100 Rorug05G0391200 Rorug05G0462900 Rorug05G0473000 Rorug06G0256500 Rorug07G0199000 Rorug07G0208800 Rorug07G0208800 Rorug07G0316600 Rorug07G0316700
rosa_samantha Rh2BG532400 Rh2CG581900 Rh3CG322600 Rh6AG079900 Rh6AG250800 Rh6AG496300 Rh6BG506100 Rh6CG126000 Rh6CG511700 Rh6DG109400 Rh6DG112700 Rh7CG104500 Rh7CG322000 Rh7CG431500
rosa_wichuraiana Rw0G020410 Rw1G009190 Rw1G014580 Rw1G021000 Rw1G022190 Rw2G025900 Rw2G029920 Rw2G037530 Rw3G018560 Rw3G020560 Rw4G008500 Rw4G022520 Rw5G019030 Rw5G031180 Rw5G044830 Rw6G005010 Rw6G006890 Rw6G011330 Rw6G011380 Rw6G023900 Rw7G028490 Rw7G030170 Rw7G030370 Rw7G032030 Rw7G032040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 139
AccB1I GGYRCC 1 cut(s) 15
AccI GTMKAC 3 cut(s) 327, 1642, 1806
AciI CCGC 9 cut(s) 55, 208, 273, 278, 311, 773, 836, 1876, 2113
AclWI GGATC 2 cut(s) 1413, 1807
AcoI YGGCCR 1 cut(s) 1515
AcsI RAATTY 4 cut(s) 591, 617, 1238, 1662
AcuI CTGAAG 3 cut(s) 119, 768, 1665
AcyI GRCGYC 2 cut(s) 16, 114
AfaI GTAC 3 cut(s) 957, 1008, 1508
AfiI CCNNNNNNNGG 4 cut(s) 576, 857, 895, 1723
AflIII ACRYGT 3 cut(s) 1366, 1929, 1976
AjiI CACGTC 2 cut(s) 220, 1367
AjnI CCWGG 2 cut(s) 176, 2023
AjuI GAANNNNNNNTTGG 2 cut(s) 1434, 1466
AloI GAACNNNNNNTCC 2 cut(s) 780, 812
Alw21I GWGCWC 2 cut(s) 234, 338
Alw26I GTCTC 2 cut(s) 450, 1137
AlwI GGATC 2 cut(s) 1413, 1807
AlwNI CAGNNNCTG 1 cut(s) 650
Ama87I CYCGRG 1 cut(s) 407
AoxI GGCC 4 cut(s) 210, 388, 1165, 1515
ApoI RAATTY 4 cut(s) 591, 617, 1238, 1662
ArsI GACNNNNNNTTYG 2 cut(s) 1115, 1147
Asp700I GAANNNNTTC 2 cut(s) 199, 1446
AspLEI GCGC 2 cut(s) 18, 310
AspS9I GGNCC 1 cut(s) 210
AsuC2I CCSGG 1 cut(s) 1718
AsuHPI GGTGA 2 cut(s) 304, 526
AsuII TTCGAA 2 cut(s) 341, 2004
AvaI CYCGRG 1 cut(s) 407
BaeGI GKGCMC 1 cut(s) 2031
BaeI ACNNNNGTAYC 2 cut(s) 618, 651
BalI TGGCCA 1 cut(s) 1517
BanI GGYRCC 1 cut(s) 15
BanII GRGCYC 2 cut(s) 234, 338
BauI CACGAG 2 cut(s) 356, 1308
Bbv12I GWGCWC 2 cut(s) 234, 338
BccI CCATC 6 cut(s) 539, 1226, 1484, 1567, 1700, 1752
BceAI ACGGC 3 cut(s) 298, 383, 1985
BcgI CGANNNNNNTGC 2 cut(s) 307, 341
BciT130I CCWGG 2 cut(s) 178, 2025
BclI TGATCA 1 cut(s) 2040
BcnI CCSGG 1 cut(s) 1718
BcoDI GTCTC 2 cut(s) 450, 1137
BfaI CTAG 7 cut(s) 386, 452, 602, 794, 1467, 1583, 2019
BfmI CTRYAG 2 cut(s) 1845, 2117
BfoI RGCGCY 2 cut(s) 19, 311
BfuAI ACCTGC 1 cut(s) 139
BglII AGATCT 2 cut(s) 1831, 2066
Bme1390I CCNGG 3 cut(s) 178, 1718, 2025
BmeT110I CYCGRG 1 cut(s) 407
BmgBI CACGTC 2 cut(s) 220, 1367
BmgT120I GGNCC 1 cut(s) 210
BmiI GGNNCC 2 cut(s) 17, 282
BmrFI CCNGG 3 cut(s) 178, 1718, 2025
BmsI GCATC 8 cut(s) 421, 517, 742, 978, 1326, 1537, 1675, 1717
BpmI CTGGAG 2 cut(s) 199, 672
Bpu14I TTCGAA 2 cut(s) 341, 2004
BpuEI CTTGAG 2 cut(s) 1812, 1856
BpuMI CCSGG 1 cut(s) 1718
Bsa29I ATCGAT 1 cut(s) 1425
BsaBI GATNNNNATC 1 cut(s) 1854
BsaHI GRCGYC 2 cut(s) 16, 114
BsaI GGTCTC 1 cut(s) 1137
BsaJI CCNNGG 2 cut(s) 11, 2024
BsaWI WCCGGW 2 cut(s) 330, 1796
BsaXI ACNNNNNCTCC 2 cut(s) 1522, 1552
Bsc4I CCNNNNNNNGG 4 cut(s) 576, 857, 895, 1723
Bse1I ACTGG 1 cut(s) 66
Bse3DI GCAATG 3 cut(s) 718, 1704, 1965
Bse8I GATNNNNATC 1 cut(s) 1854
BseBI CCWGG 2 cut(s) 178, 2025
BseCI ATCGAT 1 cut(s) 1425
BseDI CCNNGG 2 cut(s) 11, 2024
BseGI GGATG 4 cut(s) 1237, 1552, 1732, 2062
BseJI GATNNNNATC 1 cut(s) 1854
BseLI CCNNNNNNNGG 4 cut(s) 576, 857, 895, 1723
BseMI GCAATG 3 cut(s) 718, 1704, 1965
BseMII CTCAG 3 cut(s) 1027, 1423, 1852
BseNI ACTGG 1 cut(s) 66
BseRI GAGGAG 4 cut(s) 95, 1307, 1545, 1826
BseSI GKGCMC 1 cut(s) 2031
BsgI GTGCAG 2 cut(s) 119, 337
Bsh1285I CGRYCG 1 cut(s) 331
BshFI GGCC 4 cut(s) 212, 390, 1167, 1517
BshNI GGYRCC 1 cut(s) 15
BshVI ATCGAT 1 cut(s) 1425
BsiEI CGRYCG 1 cut(s) 331
BsiHKAI GWGCWC 2 cut(s) 234, 338
BsiHKCI CYCGRG 1 cut(s) 407
BsiSI CCGG 5 cut(s) 108, 284, 331, 1717, 1797
BslFI GGGAC 2 cut(s) 1748, 1881
BslI CCNNNNNNNGG 4 cut(s) 576, 857, 895, 1723
BsmAI GTCTC 2 cut(s) 450, 1137
BsmFI GGGAC 2 cut(s) 1748, 1881
BsmI GAATGC 1 cut(s) 713
BsnI GGCC 4 cut(s) 212, 390, 1167, 1517
Bso31I GGTCTC 1 cut(s) 1137
BsoBI CYCGRG 1 cut(s) 407
Bsp119I TTCGAA 2 cut(s) 341, 2004
Bsp1286I GDGCHC 3 cut(s) 234, 338, 2031
Bsp1407I TGTACA 3 cut(s) 955, 1006, 1506
BspACI CCGC 9 cut(s) 55, 208, 273, 278, 311, 773, 836, 1876, 2113
BspANI GGCC 4 cut(s) 212, 390, 1167, 1517
BspCNI CTCAG 3 cut(s) 1026, 1422, 1851
BspDI ATCGAT 1 cut(s) 1425
BspHI TCATGA 1 cut(s) 547
BspLI GGNNCC 2 cut(s) 17, 282
BspMAI CTGCAG 1 cut(s) 1849
BspMI ACCTGC 1 cut(s) 139
BspPI GGATC 2 cut(s) 1413, 1807
BspQI GCTCTTC 2 cut(s) 343, 723
BspT104I TTCGAA 2 cut(s) 341, 2004
BspT107I GGYRCC 1 cut(s) 15
BspTNI GGTCTC 1 cut(s) 1137
BsrDI GCAATG 3 cut(s) 718, 1704, 1965
BsrGI TGTACA 3 cut(s) 955, 1006, 1506
BsrI ACTGG 1 cut(s) 66
BssECI CCNNGG 2 cut(s) 11, 2024
BssNI GRCGYC 2 cut(s) 16, 114
BssSI CACGAG 2 cut(s) 356, 1308
Bst2BI CACGAG 2 cut(s) 356, 1308
Bst2UI CCWGG 2 cut(s) 178, 2025
Bst4CI ACNGT 3 cut(s) 97, 1647, 2033
Bst6I CTCTTC 6 cut(s) 60, 172, 343, 461, 723, 808
BstACI GRCGYC 2 cut(s) 16, 114
BstAUI TGTACA 3 cut(s) 955, 1006, 1506
BstBI TTCGAA 2 cut(s) 341, 2004
BstC8I GCNNGC 5 cut(s) 210, 234, 306, 1670, 1674
BstDEI CTNAG 5 cut(s) 866, 1013, 1409, 1838, 2091
BstEII GGTNACC 1 cut(s) 1712
BstF5I GGATG 4 cut(s) 1237, 1552, 1732, 2062
BstH2I RGCGCY 2 cut(s) 19, 311
BstHHI GCGC 2 cut(s) 18, 310
BstMAI GTCTC 2 cut(s) 450, 1137
BstMCI CGRYCG 1 cut(s) 331
BstNI CCWGG 2 cut(s) 178, 2025
BstNSI RCATGY 2 cut(s) 1933, 1980
BstPI GGTNACC 1 cut(s) 1712
BstSCI CCNGG 3 cut(s) 176, 1716, 2023
BstSFI CTRYAG 2 cut(s) 1845, 2117
BstSLI GKGCMC 1 cut(s) 2031
BstX2I RGATCY 3 cut(s) 1405, 1831, 2066
BstYI RGATCY 3 cut(s) 1405, 1831, 2066
Bsu15I ATCGAT 1 cut(s) 1425
BsuRI GGCC 4 cut(s) 212, 390, 1167, 1517
BsuTUI ATCGAT 1 cut(s) 1425
BtrI CACGTC 2 cut(s) 220, 1367
BtsCI GGATG 4 cut(s) 1237, 1552, 1732, 2062
BtsI GCAGTG 2 cut(s) 346, 379
BtsIMutI CAGTG 3 cut(s) 346, 379, 2029
BveI ACCTGC 1 cut(s) 139
Cac8I GCNNGC 5 cut(s) 210, 234, 306, 1670, 1674
CaiI CAGNNNCTG 1 cut(s) 650
CciI TCATGA 1 cut(s) 547
CfoI GCGC 2 cut(s) 18, 310
Cfr13I GGNCC 1 cut(s) 210
ClaI ATCGAT 1 cut(s) 1425
CseI GACGC 2 cut(s) 122, 496
Csp6I GTAC 3 cut(s) 956, 1007, 1507
CspCI CAANNNNNGTGG 1 cut(s) 2091
CviAII CATG 7 cut(s) 485, 548, 1304, 1528, 1930, 1955, 1977
CviQI GTAC 3 cut(s) 956, 1007, 1507
DdeI CTNAG 5 cut(s) 866, 1013, 1409, 1838, 2091
DinI GGCGCC 1 cut(s) 17
DraI TTTAAA 1 cut(s) 676
EaeI YGGCCR 1 cut(s) 1515
Eam1104I CTCTTC 6 cut(s) 60, 172, 343, 461, 723, 808
EarI CTCTTC 6 cut(s) 60, 172, 343, 461, 723, 808
Ecl136II GAGCTC 2 cut(s) 232, 336
Eco147I AGGCCT 1 cut(s) 390
Eco24I GRGCYC 2 cut(s) 234, 338
Eco31I GGTCTC 1 cut(s) 1137
Eco53kI GAGCTC 2 cut(s) 232, 336
Eco57I CTGAAG 3 cut(s) 119, 768, 1665
Eco88I CYCGRG 1 cut(s) 407
Eco91I GGTNACC 1 cut(s) 1712
EcoICRI GAGCTC 2 cut(s) 232, 336
EcoO65I GGTNACC 1 cut(s) 1712
EcoRI GAATTC 1 cut(s) 591
EcoRII CCWGG 2 cut(s) 176, 2023
EcoT38I GRGCYC 2 cut(s) 234, 338
EgeI GGCGCC 1 cut(s) 17
EheI GGCGCC 1 cut(s) 17
FaeI CATG 7 cut(s) 488, 551, 1307, 1531, 1933, 1958, 1980
FalI AAGNNNNNCTT 2 cut(s) 813, 845
FaqI GGGAC 2 cut(s) 1748, 1881
FatI CATG 7 cut(s) 484, 547, 1303, 1527, 1929, 1954, 1976
FauI CCCGC 2 cut(s) 201, 829
FbaI TGATCA 1 cut(s) 2040
FblI GTMKAC 3 cut(s) 327, 1642, 1806
FokI GGATG 4 cut(s) 1244, 1559, 1739, 2069
FriOI GRGCYC 2 cut(s) 234, 338
FspBI CTAG 7 cut(s) 386, 452, 602, 794, 1467, 1583, 2019
GlaI GCGC 2 cut(s) 17, 309
GsuI CTGGAG 2 cut(s) 199, 672
HaeII RGCGCY 2 cut(s) 19, 311
HaeIII GGCC 4 cut(s) 212, 390, 1167, 1517
HapII CCGG 5 cut(s) 108, 284, 331, 1717, 1797
HgaI GACGC 2 cut(s) 122, 496
HhaI GCGC 2 cut(s) 18, 310
Hin1I GRCGYC 2 cut(s) 16, 114
Hin1II CATG 7 cut(s) 488, 551, 1307, 1531, 1933, 1958, 1980
Hin6I GCGC 2 cut(s) 16, 308
HinP1I GCGC 2 cut(s) 16, 308
HincII GTYRAC 2 cut(s) 328, 430
HindII GTYRAC 2 cut(s) 328, 430
HinfI GANTC 8 cut(s) 164, 694, 932, 1055, 1118, 1300, 1531, 1869
HpaII CCGG 5 cut(s) 108, 284, 331, 1717, 1797
HphI GGTGA 2 cut(s) 304, 526
Hpy166II GTNNAC 9 cut(s) 256, 328, 430, 799, 949, 1600, 1643, 1807, 2036
Hpy188III TCNNGA 5 cut(s) 161, 548, 577, 1829, 2044
Hpy8I GTNNAC 9 cut(s) 256, 328, 430, 799, 949, 1600, 1643, 1807, 2036
Hpy99I CGWCG 1 cut(s) 116
HpyAV CCTTC 8 cut(s) 37, 263, 361, 401, 578, 1631, 1717, 1960
HpyCH4III ACNGT 3 cut(s) 97, 1647, 2033
HpyCH4IV ACGT 5 cut(s) 219, 249, 258, 1366, 1625
HpyF3I CTNAG 5 cut(s) 866, 1013, 1409, 1838, 2091
HpySE526I ACGT 5 cut(s) 219, 249, 258, 1366, 1625
Hsp92I GRCGYC 2 cut(s) 16, 114
Hsp92II CATG 7 cut(s) 488, 551, 1307, 1531, 1933, 1958, 1980
HspAI GCGC 2 cut(s) 16, 308
KasI GGCGCC 1 cut(s) 15
Ksp22I TGATCA 1 cut(s) 2040
LguI GCTCTTC 2 cut(s) 343, 723
LmnI GCTCC 9 cut(s) 4, 82, 333, 653, 839, 1400, 1558, 1588, 1996
LweI GCATC 8 cut(s) 421, 517, 742, 978, 1326, 1537, 1675, 1717
MaeI CTAG 7 cut(s) 386, 452, 602, 794, 1467, 1583, 2019
MaeII ACGT 5 cut(s) 219, 249, 258, 1366, 1625
MaeIII GTNAC 5 cut(s) 487, 657, 1267, 1621, 1712
MflI RGATCY 3 cut(s) 1405, 1831, 2066
MhlI GDGCHC 3 cut(s) 234, 338, 2031
MlsI TGGCCA 1 cut(s) 1517
MluCI AATT 8 cut(s) 591, 617, 783, 917, 1238, 1442, 1662, 2009
MluNI TGGCCA 1 cut(s) 1517
Mly113I GGCGCC 1 cut(s) 16
MlyI GAGTC 4 cut(s) 158, 1049, 1525, 1863
MmeI TCCRAC 2 cut(s) 997, 1589
Mox20I TGGCCA 1 cut(s) 1517
MroXI GAANNNNTTC 2 cut(s) 199, 1446
MscI TGGCCA 1 cut(s) 1517
MseI TTAA 4 cut(s) 402, 564, 675, 734
MslI CAYNNNNRTG 2 cut(s) 734, 1086
Msp20I TGGCCA 1 cut(s) 1517
MspA1I CMGCKG 1 cut(s) 647
MspI CCGG 5 cut(s) 108, 284, 331, 1717, 1797
MspR9I CCNGG 3 cut(s) 178, 1718, 2025
Mva1269I GAATGC 1 cut(s) 713
MvaI CCWGG 2 cut(s) 178, 2025
NarI GGCGCC 1 cut(s) 16
NciI CCSGG 1 cut(s) 1718
NlaIII CATG 7 cut(s) 488, 551, 1307, 1531, 1933, 1958, 1980
NlaIV GGNNCC 2 cut(s) 17, 282
NmeAIII GCCGAG 3 cut(s) 36, 169, 253
NmuCI GTSAC 1 cut(s) 1267
NspI RCATGY 2 cut(s) 1933, 1980
NspV TTCGAA 2 cut(s) 341, 2004
PagI TCATGA 1 cut(s) 547
PceI AGGCCT 1 cut(s) 390
PciI ACATGT 2 cut(s) 1929, 1976
PciSI GCTCTTC 2 cut(s) 343, 723
PcsI WCGNNNNNNNCGW 3 cut(s) 225, 240, 255
PctI GAATGC 1 cut(s) 713
PdmI GAANNNNTTC 2 cut(s) 199, 1446
PfeI GAWTC 4 cut(s) 694, 932, 1118, 1300
PfoI TCCNGGA 1 cut(s) 176
PleI GAGTC 4 cut(s) 158, 1049, 1525, 1863
PluTI GGCGCC 1 cut(s) 19
PpsI GAGTC 4 cut(s) 158, 1049, 1525, 1863
PscI ACATGT 2 cut(s) 1929, 1976
Psp124BI GAGCTC 2 cut(s) 234, 338
Psp6I CCWGG 2 cut(s) 176, 2023
PspEI GGTNACC 1 cut(s) 1712
PspGI CCWGG 2 cut(s) 176, 2023
PspN4I GGNNCC 2 cut(s) 17, 282
PspPI GGNCC 1 cut(s) 210
PstI CTGCAG 1 cut(s) 1849
PstNI CAGNNNCTG 1 cut(s) 650
PsuI RGATCY 3 cut(s) 1405, 1831, 2066
PvuII CAGCTG 1 cut(s) 647
RsaI GTAC 3 cut(s) 957, 1008, 1508
RsaNI GTAC 3 cut(s) 956, 1007, 1507
RseI CAYNNNNRTG 2 cut(s) 734, 1086
SacI GAGCTC 2 cut(s) 234, 338
SalI GTCGAC 1 cut(s) 326
SapI GCTCTTC 2 cut(s) 343, 723
SaqAI TTAA 4 cut(s) 402, 564, 675, 734
Sau96I GGNCC 1 cut(s) 210
SchI GAGTC 4 cut(s) 158, 1049, 1525, 1863
ScrFI CCNGG 3 cut(s) 178, 1718, 2025
SduI GDGCHC 3 cut(s) 234, 338, 2031
SfaNI GCATC 8 cut(s) 421, 517, 742, 978, 1326, 1537, 1675, 1717
SfcI CTRYAG 2 cut(s) 1845, 2117
SfoI GGCGCC 1 cut(s) 17
SfuI TTCGAA 2 cut(s) 341, 2004
SmiMI CAYNNNNRTG 2 cut(s) 734, 1086
SmlI CTYRAG 2 cut(s) 1827, 1871
SmoI CTYRAG 2 cut(s) 1827, 1871
Sse9I AATT 8 cut(s) 591, 617, 783, 917, 1238, 1442, 1662, 2009
SseBI AGGCCT 1 cut(s) 390
SsiI CCGC 9 cut(s) 55, 208, 273, 278, 311, 773, 836, 1876, 2113
SspDI GGCGCC 1 cut(s) 15
SspI AATATT 1 cut(s) 1753
SspMI CTAG 7 cut(s) 386, 452, 602, 794, 1467, 1583, 2019
SstI GAGCTC 2 cut(s) 234, 338
StuI AGGCCT 1 cut(s) 390
StyD4I CCNGG 3 cut(s) 176, 1716, 2023
TaaI ACNGT 3 cut(s) 97, 1647, 2033
TaiI ACGT 5 cut(s) 222, 252, 261, 1369, 1628
TaqI TCGA 7 cut(s) 193, 327, 341, 493, 742, 1425, 2004
TasI AATT 8 cut(s) 591, 617, 783, 917, 1238, 1442, 1662, 2009
TatI WGTACW 3 cut(s) 955, 1006, 1506
TauI GCSGC 3 cut(s) 313, 1879, 2116
TfiI GAWTC 4 cut(s) 694, 932, 1118, 1300
Tru1I TTAA 4 cut(s) 402, 564, 675, 734
Tru9I TTAA 4 cut(s) 402, 564, 675, 734
TscAI CASTG 3 cut(s) 353, 379, 2036
TseFI GTSAC 1 cut(s) 1267
Tsp45I GTSAC 1 cut(s) 1267
TspDTI ATGAA 4 cut(s) 564, 1292, 1411, 1950
TspRI CASTG 3 cut(s) 353, 379, 2036
XapI RAATTY 4 cut(s) 591, 617, 1238, 1662
XceI RCATGY 2 cut(s) 1933, 1980
XcmI CCANNNNNNNNNTGG 1 cut(s) 1755
XmiI GTMKAC 3 cut(s) 327, 1642, 1806
XmnI GAANNNNTTC 2 cut(s) 199, 1446
XspI CTAG 7 cut(s) 386, 452, 602, 794, 1467, 1583, 2019
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.