Rmu_sc0000538.1_g000061

Protein FAR1-RELATED SEQUENCE 5-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000538.1
OG0000164
Physical Location & Seq
Forward (+)
197425 .. 202220
4796 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000538.1_g000061.1.cds

Sequence Viewer

Length: 921 bp
atgaaagttcaggaactagattacttgcctgaccaatatattttgaacagatggactaaagctgcaaatgctactatagttaaggacctagatgggttagagataacagatacaaatgcattggtggtgaagcgtagtaaattatttcatcagactgcacttgttattgacaaagtccttacaagtcctaatgaagctcagaccatgtttaatgttgctcttgacaatgtgcttgataagctcaaacaaatgcaagtcaatagtagtgacagtgcaagtatcggtaagaagttgccaagtgatgttcaacataggtataatgagccaaagattatcaaagcaaaaggttctggaatatttcttaagaagtcaaaggagaagacagagagaaagagaagtagtacaaggaaatgtcatggatgtggtttgtatgggcaattaaatgataaacggaactgtcaggctcttaatattcctaaagatagttctgttcttgacaaatatgcagacaaggatgaagatgatcacgagccaatatcaactgatgaagatgaggaccccagttcaactaaatttggtcttcgaaacttcaggcttgaggttactaaagtgaagcttcaagcttttatactcaaagcttcggctcagctcggggcgcgacggagcggcgagggttgccggaaggacgccaggggtcgggcggagcagtctgcagtcggtggagtcgccggcgacgtagttggagggctgcccagaaaacctgcagttgcaggtcgggttgctgcccagaacctgcaaccccgacctcctctgaccttgaacactgcccagaacagtccaagatgcctccggcctccctcctgcaagcctcgccccgccgccgcctgtaacgcctccgctgcgtcgccgtccgcactttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE SWIM

Protein Analysis

306

Amino Acids

33.39

Weight (kDa)

9.51

Isoelectric Point (pI)

45.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000164)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02320 FvH4_1g21472 FvH4_2g00813 FvH4_2g02512 FvH4_2g03921 FvH4_2g23460 FvH4_3g29141 FvH4_4g05791 FvH4_4g06321 FvH4_4g15595 FvH4_4g18162 FvH4_4g18163 FvH4_4g29541 FvH4_4g29541 FvH4_4g29541 FvH4_4g29541 FvH4_4g29541 FvH4_5g31093 FvH4_6g01982 FvH4_6g21931 FvH4_6g44691 FvH4_6g48541
prunus_persica Prupe.1G074100_v2.0.a1 Prupe.3G021400_v2.0.a1
pyrus_communis pycom02g18570 pycom14g00670
rosa_chinensis RchiOBHm_Chr1g0379201 RchiOBHm_Chr1g0379361 RchiOBHm_Chr4g0405981 RchiOBHm_Chr5g0073641 RchiOBHm_Chr5g0073651 RchiOBHm_Chr7g0236661
rosa_multiflora Rmu_co8179562.1_g000001 Rmu_co8343647.1_g000001 Rmu_sc0000041.1_g000017 Rmu_sc0000114.1_g000020 Rmu_sc0000286.1_g000006 Rmu_sc0000308.1_g000038 Rmu_sc0000365.1_g000061 Rmu_sc0000365.1_g000062 Rmu_sc0000538.1_g000060 Rmu_sc0000538.1_g000061 Rmu_sc0000586.1_g000016 Rmu_sc0000898.1_g000007 Rmu_sc0000913.1_g000003 Rmu_sc0000913.1_g000004 Rmu_sc0000996.1_g000006 Rmu_sc0000996.1_g000007 Rmu_sc0000998.1_g000003 Rmu_sc0001350.1_g000009 Rmu_sc0002079.1_g000009 Rmu_sc0002200.1_g000013 Rmu_sc0002226.1_g000025 Rmu_sc0002279.1_g000014 Rmu_sc0002478.1_g000014 Rmu_sc0002717.1_g000004 Rmu_sc0002868.1_g000027 Rmu_sc0002889.1_g000043 Rmu_sc0003023.1_g000001 Rmu_sc0003110.1_g000006 Rmu_sc0003226.1_g000028 Rmu_sc0003226.1_g000029 Rmu_sc0003337.1_g000053 Rmu_sc0003558.1_g000007 Rmu_sc0004345.1_g000014 Rmu_sc0004383.1_g000007 Rmu_sc0004888.1_g000021 Rmu_sc0005114.1_g000012 Rmu_sc0005223.1_g000019 Rmu_sc0005223.1_g000020 Rmu_sc0005639.1_g000025 Rmu_sc0005685.1_g000027 Rmu_sc0005992.1_g000002 Rmu_sc0006326.1_g000034 Rmu_sc0006326.1_g000035 Rmu_sc0007390.1_g000012 Rmu_sc0007451.1_g000006 Rmu_sc0007825.1_g000003 Rmu_sc0008600.1_g000023 Rmu_sc0009291.1_g000003 Rmu_sc0012046.1_g000001 Rmu_sc0012046.1_g000002 Rmu_sc0012710.1_g000001 Rmu_sc0015238.1_g000001 Rmu_sc0016125.1_g000003 Rmu_sc0016175.1_g000001 Rmu_sc0016898.1_g000001 Rmu_sc0017323.1_g000010 Rmu_sc0017874.1_g000002 Rmu_sc0019167.1_g000001 Rmu_sc0020815.1_g000006 Rmu_sc0025564.1_g000001 Rmu_sc0026418.1_g000001 Rmu_sc0035188.1_g000002 Rmu_sc0039254.1_g000001 Rmu_ssc0000120.1_g000015 Rmu_ssc0000120.1_g000016 Rmu_ssc0000330.1_g000023 Rmu_ssc0000433.1_g000004
rosa_roxburghii Rroxscaffold_1G00047130 Rroxscaffold_1G00051320 Rroxscaffold_1G00056600 Rroxscaffold_2G00109650 Rroxscaffold_2G00119980 Rroxscaffold_3G00222550 Rroxscaffold_3G00224980 Rroxscaffold_3G00251020 Rroxscaffold_6G00411190 Rroxscaffold_7G00166520 Rroxscaffold_7G00172920 Rroxscaffold_7G00191860 Rroxscaffold_7G00194430
rosa_rugosa Rorug01G0198900 Rorug01G0217300 Rorug01G0244500 Rorug02G0147400 Rorug02G0152200 Rorug02G0595500 Rorug02G0595600 Rorug03G0060500 Rorug03G0203000 Rorug03G0285800 Rorug04G0027200 Rorug04G0027300 Rorug04G0225800 Rorug05G0073400 Rorug05G0213300 Rorug05G0324600 Rorug05G0390900 Rorug05G0391000 Rorug05G0391100 Rorug05G0391200 Rorug05G0462900 Rorug05G0473000 Rorug06G0256500 Rorug07G0199000 Rorug07G0208800 Rorug07G0208800 Rorug07G0316600 Rorug07G0316700
rosa_samantha Rh2BG532400 Rh2CG581900 Rh3CG322600 Rh6AG079900 Rh6AG250800 Rh6AG496300 Rh6BG506100 Rh6CG126000 Rh6CG511700 Rh6DG109400 Rh6DG112700 Rh7CG104500 Rh7CG322000 Rh7CG431500
rosa_wichuraiana Rw0G020410 Rw1G009190 Rw1G014580 Rw1G021000 Rw1G022190 Rw2G025900 Rw2G029920 Rw2G037530 Rw3G018560 Rw3G020560 Rw4G008500 Rw4G022520 Rw5G019030 Rw5G031180 Rw5G044830 Rw6G005010 Rw6G006890 Rw6G011330 Rw6G011380 Rw6G023900 Rw7G028490 Rw7G030170 Rw7G030370 Rw7G032030 Rw7G032040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 3 cut(s) 761, 769, 801
AccBSI CCGCTC 1 cut(s) 666
AccII CGCG 1 cut(s) 658
AciI CCGC 7 cut(s) 666, 701, 876, 879, 882, 897, 912
AcsI RAATTY 1 cut(s) 572
AcuI CTGAAG 1 cut(s) 574
AcyI GRCGYC 1 cut(s) 687
AfaI GTAC 1 cut(s) 403
AfiI CCNNNNNNNGG 1 cut(s) 696
AflII CTTAAG 1 cut(s) 362
AgsI TTSAA 5 cut(s) 46, 308, 567, 620, 820
AjnI CCWGG 1 cut(s) 689
AluBI AGCT 7 cut(s) 62, 197, 241, 616, 623, 638, 649
AluI AGCT 7 cut(s) 62, 197, 241, 616, 623, 638, 649
AlwNI CAGNNNCTG 1 cut(s) 793
Ama87I CYCGRG 1 cut(s) 650
AoxI GGCC 1 cut(s) 851
ApeKI GCWGC 4 cut(s) 62, 748, 782, 899
ApoI RAATTY 1 cut(s) 572
AspLEI GCGC 1 cut(s) 658
AspS9I GGNCC 2 cut(s) 85, 556
AsuHPI GGTGA 1 cut(s) 139
AsuII TTCGAA 1 cut(s) 583
AvaI CYCGRG 1 cut(s) 650
AvaII GGWCC 2 cut(s) 85, 556
BauI CACGAG 1 cut(s) 527
BbsI GAAGAC 2 cut(s) 386, 572
BbvI GCAGC 4 cut(s) 49, 735, 769, 886
BccI CCATC 2 cut(s) 45, 86
BceAI ACGGC 1 cut(s) 892
BciT130I CCWGG 1 cut(s) 691
BclI TGATCA 1 cut(s) 523
BfaI CTAG 2 cut(s) 17, 89
BfmI CTRYAG 3 cut(s) 75, 711, 762
BfrI CTTAAG 1 cut(s) 362
BfuAI ACCTGC 3 cut(s) 761, 769, 801
BisI GCNGC 7 cut(s) 63, 667, 749, 783, 879, 882, 900
BlpI GCTNAGC 1 cut(s) 645
BlsI GCNGC 7 cut(s) 64, 668, 750, 784, 880, 883, 901
Bme1390I CCNGG 1 cut(s) 691
Bme18I GGWCC 2 cut(s) 85, 556
BmeT110I CYCGRG 1 cut(s) 650
BmgT120I GGNCC 2 cut(s) 85, 556
BmiI GGNNCC 1 cut(s) 558
BmrFI CCNGG 1 cut(s) 691
BmrI ACTGGG 1 cut(s) 555
BmsI GCATC 1 cut(s) 833
BmuI ACTGGG 1 cut(s) 555
BpiI GAAGAC 2 cut(s) 386, 572
Bpu1102I GCTNAGC 1 cut(s) 645
Bpu14I TTCGAA 1 cut(s) 583
BpuEI CTTGAG 1 cut(s) 617
BsaHI GRCGYC 1 cut(s) 687
BsaJI CCNNGG 1 cut(s) 690
Bsc4I CCNNNNNNNGG 1 cut(s) 696
Bse118I RCCGGY 1 cut(s) 728
Bse1I ACTGG 1 cut(s) 561
BseBI CCWGG 1 cut(s) 691
BseDI CCNNGG 1 cut(s) 690
BseGI GGATG 2 cut(s) 425, 520
BseLI CCNNNNNNNGG 1 cut(s) 696
BseMII CTCAG 2 cut(s) 212, 659
BseNI ACTGG 1 cut(s) 561
BseRI GAGGAG 1 cut(s) 798
BseXI GCAGC 4 cut(s) 49, 735, 769, 886
BsgI GTGCAG 1 cut(s) 141
Bsh1236I CGCG 1 cut(s) 658
BshFI GGCC 1 cut(s) 853
BsiHKCI CYCGRG 1 cut(s) 650
BsiSI CCGG 3 cut(s) 679, 729, 850
BslI CCNNNNNNNGG 1 cut(s) 696
BsnI GGCC 1 cut(s) 853
BsoBI CYCGRG 1 cut(s) 650
Bsp119I TTCGAA 1 cut(s) 583
Bsp143I GATC 1 cut(s) 523
Bsp1720I GCTNAGC 1 cut(s) 645
BspACI CCGC 7 cut(s) 666, 701, 876, 879, 882, 897, 912
BspANI GGCC 1 cut(s) 853
BspCNI CTCAG 2 cut(s) 211, 658
BspFNI CGCG 1 cut(s) 658
BspLI GGNNCC 1 cut(s) 558
BspMAI CTGCAG 2 cut(s) 715, 766
BspMI ACCTGC 3 cut(s) 761, 769, 801
BspT104I TTCGAA 1 cut(s) 583
BspTI CTTAAG 1 cut(s) 362
BsrBI CCGCTC 1 cut(s) 666
BsrFI RCCGGY 1 cut(s) 728
BsrI ACTGG 1 cut(s) 561
BssAI RCCGGY 1 cut(s) 728
BssECI CCNNGG 1 cut(s) 690
BssMI GATC 1 cut(s) 523
BssNI GRCGYC 1 cut(s) 687
BssSI CACGAG 1 cut(s) 527
Bst2BI CACGAG 1 cut(s) 527
Bst2UI CCWGG 1 cut(s) 691
Bst4CI ACNGT 3 cut(s) 272, 458, 836
BstACI GRCGYC 1 cut(s) 687
BstAFI CTTAAG 1 cut(s) 362
BstBI TTCGAA 1 cut(s) 583
BstC8I GCNNGC 2 cut(s) 730, 866
BstDEI CTNAG 2 cut(s) 198, 645
BstF5I GGATG 2 cut(s) 425, 520
BstFNI CGCG 1 cut(s) 658
BstHHI GCGC 1 cut(s) 658
BstKTI GATC 1 cut(s) 526
BstMBI GATC 1 cut(s) 523
BstMWI GCNNNNNNNGC 7 cut(s) 68, 238, 655, 675, 870, 890, 899
BstNI CCWGG 1 cut(s) 691
BstSCI CCNGG 1 cut(s) 689
BstSFI CTRYAG 3 cut(s) 75, 711, 762
BstUI CGCG 1 cut(s) 658
BstV1I GCAGC 4 cut(s) 49, 735, 769, 886
BstV2I GAAGAC 2 cut(s) 386, 572
BsuRI GGCC 1 cut(s) 853
BtsCI GGATG 2 cut(s) 425, 520
BtsI GCAGTG 1 cut(s) 822
BtsIMutI CAGTG 2 cut(s) 277, 822
BveI ACCTGC 3 cut(s) 761, 769, 801
Cac8I GCNNGC 2 cut(s) 730, 866
CaiI CAGNNNCTG 1 cut(s) 793
CfoI GCGC 1 cut(s) 658
Cfr10I RCCGGY 1 cut(s) 728
Cfr13I GGNCC 2 cut(s) 85, 556
CseI GACGC 2 cut(s) 695, 891
Csp6I GTAC 1 cut(s) 402
CviAII CATG 2 cut(s) 205, 416
CviQI GTAC 1 cut(s) 402
DdeI CTNAG 2 cut(s) 198, 645
DpnI GATC 1 cut(s) 525
DpnII GATC 1 cut(s) 523
EciI GGCGGA 1 cut(s) 716
Eco47I GGWCC 2 cut(s) 85, 556
Eco57I CTGAAG 1 cut(s) 574
Eco88I CYCGRG 1 cut(s) 650
EcoO109I RGGNCCY 2 cut(s) 85, 556
EcoRII CCWGG 1 cut(s) 689
EcoT22I ATGCAT 1 cut(s) 121
FaeI CATG 2 cut(s) 208, 419
FaiI YATR 9 cut(s) 39, 77, 206, 312, 318, 417, 432, 504, 629
FalI AAGNNNNNCTT 2 cut(s) 600, 632
FatI CATG 2 cut(s) 204, 415
FauI CCCGC 1 cut(s) 883
FbaI TGATCA 1 cut(s) 523
Fnu4HI GCNGC 7 cut(s) 63, 667, 749, 783, 879, 882, 900
FokI GGATG 2 cut(s) 432, 527
Fsp4HI GCNGC 7 cut(s) 63, 667, 749, 783, 879, 882, 900
FspBI CTAG 2 cut(s) 17, 89
GlaI GCGC 1 cut(s) 657
GluI GCNGC 7 cut(s) 63, 667, 749, 783, 879, 882, 900
HaeIII GGCC 1 cut(s) 853
HapII CCGG 3 cut(s) 679, 729, 850
HgaI GACGC 2 cut(s) 695, 891
HhaI GCGC 1 cut(s) 658
Hin1I GRCGYC 1 cut(s) 687
Hin1II CATG 2 cut(s) 208, 419
Hin6I GCGC 1 cut(s) 656
HinP1I GCGC 1 cut(s) 656
HindIII AAGCTT 3 cut(s) 614, 621, 636
HinfI GANTC 1 cut(s) 723
HpaII CCGG 3 cut(s) 679, 729, 850
HphI GGTGA 1 cut(s) 139
Hpy188I TCNGA 3 cut(s) 153, 201, 813
Hpy188III TCNNGA 5 cut(s) 11, 221, 351, 494, 527
Hpy99I CGWCG 3 cut(s) 663, 737, 907
HpyAV CCTTC 1 cut(s) 676
HpyCH4III ACNGT 3 cut(s) 272, 458, 836
HpyCH4IV ACGT 1 cut(s) 735
HpyF10VI GCNNNNNNNGC 7 cut(s) 68, 238, 655, 675, 870, 890, 899
HpyF3I CTNAG 2 cut(s) 198, 645
HpySE526I ACGT 1 cut(s) 735
Hsp92I GRCGYC 1 cut(s) 687
Hsp92II CATG 2 cut(s) 208, 419
HspAI GCGC 1 cut(s) 656
KroI GCCGGC 1 cut(s) 728
KroNI GCCGGC 1 cut(s) 730
Ksp22I TGATCA 1 cut(s) 523
Kzo9I GATC 1 cut(s) 523
LmnI GCTCC 2 cut(s) 663, 703
Lsp1109I GCAGC 4 cut(s) 49, 735, 769, 886
LweI GCATC 1 cut(s) 833
MaeI CTAG 2 cut(s) 17, 89
MaeII ACGT 1 cut(s) 735
MaeIII GTNAC 3 cut(s) 266, 601, 887
MalI GATC 1 cut(s) 525
MbiI CCGCTC 1 cut(s) 666
MboI GATC 1 cut(s) 523
MboII GAAGA 4 cut(s) 391, 530, 560, 572
MluCI AATT 3 cut(s) 140, 437, 572
MlyI GAGTC 1 cut(s) 732
MmeI TCCRAC 1 cut(s) 721
Mph1103I ATGCAT 1 cut(s) 121
MreI CGCCGGCG 1 cut(s) 728
MroNI GCCGGC 1 cut(s) 728
MseI TTAA 5 cut(s) 81, 210, 363, 440, 468
MslI CAYNNNNRTG 1 cut(s) 420
MspA1I CMGCKG 1 cut(s) 899
MspCI CTTAAG 1 cut(s) 362
MspI CCGG 3 cut(s) 679, 729, 850
MspR9I CCNGG 1 cut(s) 691
MvaI CCWGG 1 cut(s) 691
MvnI CGCG 1 cut(s) 658
MwoI GCNNNNNNNGC 7 cut(s) 68, 238, 655, 675, 870, 890, 899
NaeI GCCGGC 1 cut(s) 730
NdeII GATC 1 cut(s) 523
NgoMIV GCCGGC 1 cut(s) 728
NlaIII CATG 2 cut(s) 208, 419
NlaIV GGNNCC 1 cut(s) 558
NmuCI GTSAC 1 cut(s) 266
NsiI ATGCAT 1 cut(s) 121
NspV TTCGAA 1 cut(s) 583
PcsI WCGNNNNNNNCGW 1 cut(s) 732
PdiI GCCGGC 1 cut(s) 730
PflFI GACNNNGTC 1 cut(s) 173
PkrI GCNGC 7 cut(s) 64, 668, 750, 784, 880, 883, 901
PleI GAGTC 1 cut(s) 731
PpsI GAGTC 1 cut(s) 731
PpuMI RGGWCCY 2 cut(s) 85, 556
Psp5II RGGWCCY 2 cut(s) 85, 556
Psp6I CCWGG 1 cut(s) 689
PspGI CCWGG 1 cut(s) 689
PspN4I GGNNCC 1 cut(s) 558
PspPI GGNCC 2 cut(s) 85, 556
PspPPI RGGWCCY 2 cut(s) 85, 556
PstI CTGCAG 2 cut(s) 715, 766
PstNI CAGNNNCTG 1 cut(s) 793
PsyI GACNNNGTC 1 cut(s) 173
RsaI GTAC 1 cut(s) 403
RsaNI GTAC 1 cut(s) 402
RseI CAYNNNNRTG 1 cut(s) 420
SaqAI TTAA 5 cut(s) 81, 210, 363, 440, 468
SatI GCNGC 7 cut(s) 63, 667, 749, 783, 879, 882, 900
Sau3AI GATC 1 cut(s) 523
Sau96I GGNCC 2 cut(s) 85, 556
SchI GAGTC 1 cut(s) 732
ScrFI CCNGG 1 cut(s) 691
SfaNI GCATC 1 cut(s) 833
SfcI CTRYAG 3 cut(s) 75, 711, 762
SfuI TTCGAA 1 cut(s) 583
SgrAI CRCCGGYG 1 cut(s) 728
SinI GGWCC 2 cut(s) 85, 556
SmiMI CAYNNNNRTG 1 cut(s) 420
SmlI CTYRAG 2 cut(s) 362, 596
SmoI CTYRAG 2 cut(s) 362, 596
Sse9I AATT 3 cut(s) 140, 437, 572
SsiI CCGC 7 cut(s) 666, 701, 876, 879, 882, 897, 912
SspI AATATT 2 cut(s) 357, 472
SspMI CTAG 2 cut(s) 17, 89
StyD4I CCNGG 1 cut(s) 689
TaaI ACNGT 3 cut(s) 272, 458, 836
TaiI ACGT 1 cut(s) 738
TaqI TCGA 1 cut(s) 583
TasI AATT 3 cut(s) 140, 437, 572
TatI WGTACW 1 cut(s) 401
TauI GCSGC 3 cut(s) 669, 881, 884
Tru1I TTAA 5 cut(s) 81, 210, 363, 440, 468
Tru9I TTAA 5 cut(s) 81, 210, 363, 440, 468
TscAI CASTG 2 cut(s) 277, 829
TseFI GTSAC 1 cut(s) 266
TseI GCWGC 4 cut(s) 62, 748, 782, 899
Tsp45I GTSAC 1 cut(s) 266
TspDTI ATGAA 5 cut(s) 17, 137, 207, 531, 561
TspGWI ACGGA 2 cut(s) 466, 676
TspRI CASTG 2 cut(s) 277, 829
Tth111I GACNNNGTC 1 cut(s) 173
Vha464I CTTAAG 1 cut(s) 362
VpaK11BI GGWCC 2 cut(s) 85, 556
XapI RAATTY 1 cut(s) 572
XspI CTAG 2 cut(s) 17, 89
Zsp2I ATGCAT 1 cut(s) 121
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.