Rw7G030170

Protein FAR1-RELATED SEQUENCE 5-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0000164
Physical Location & Seq
Reverse (-)
42580124 .. 42584286
4163 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G030170.1

Sequence Viewer

Length: 1029 bp
ATGGAGTCAGAGGATGATCAAGTTTATATTCCTCAAGAAAAATACATATTAAAAATGTCACACTTTGTGCTCCTATCACTAATGCCTAAATTATACGAAGAGATTGGAACAATAGATGATGTTGCTGCTTTCTACAACAGATATGCAAAAGAAGCAGGGTTTAGTATTAGAAGTCATTCTAGAAGAAGTATGTCTGTTATAAGCAAGGAGATTCCAAAATTCAAGGAGAAAAACGTAAGAGAGGATTACCAAAACTTGGTAAATGTTCAGAAACATAAACAGTTTGAATTCTTTGGTGTTCAGGCAGGTGAAATTCAAAATATTAGTTTTATACAATGTGATCTATATAATTATGGAAGAACTTGTCGTGAAGAGAAGAAGGGGCATGATGGAGATCTCTTGTACATGCATTTTCAGAATGAGAAAGAAAAAGATTCTTCTTTTGTCTATATAATGGAGTCAGATGAGGAAAATAGAGTAACACGGTGCTTTTGGACTGACTCAATTTCAAGACGAGCTTACAGGTTTTATGGAAATGTAGTTATCTTTGATACTACATACAACACAATTCAATATGGAATAATTTTTGCACCATTCACTGGTGTTAATAATCATGGGCAGATAATCATCTTTGCTTGTGCATTCTTAAATGATGAGACAGCCAATTCTTTTGTTTGTAGAGATGAGTTTGACTCAAGATGGATTGAAATTATTGAGAAGAGTGGGTTTAGTGATAACAAGTGGCTGGAGTCAATATACGAAATTCATTCATCATGGATACCAACACATTTTAAGAGGGGACTTCTTCACCAATGCCATTATGAGTTAGAGGAGGATCATGTTAATATTGATGAGAAGGAAAAAAATGTCATGTCCATTGACATAGAAGATCATATGGCCAAGGTTTATACACGGAAACTATTTTATGAAGTTCAAGAACAGCCTGCTATTGATAAATATGGGGATTCAAGTTCCACCAGTATGGATGAGGATAGTTGCTCATCAATAGGTGAACTCAATACATGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE SWIM

Protein Analysis

342

Amino Acids

40.28

Weight (kDa)

5.04

Isoelectric Point (pI)

58.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MULE PF10551 180 - 226 7.1e-10 MULE transposase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000164)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02320 FvH4_1g21472 FvH4_2g00813 FvH4_2g02512 FvH4_2g03921 FvH4_2g23460 FvH4_3g29141 FvH4_4g05791 FvH4_4g06321 FvH4_4g15595 FvH4_4g18162 FvH4_4g18163 FvH4_4g29541 FvH4_4g29541 FvH4_4g29541 FvH4_4g29541 FvH4_4g29541 FvH4_5g31093 FvH4_6g01982 FvH4_6g21931 FvH4_6g44691 FvH4_6g48541
prunus_persica Prupe.1G074100_v2.0.a1 Prupe.3G021400_v2.0.a1
pyrus_communis pycom02g18570 pycom14g00670
rosa_chinensis RchiOBHm_Chr1g0379201 RchiOBHm_Chr1g0379361 RchiOBHm_Chr4g0405981 RchiOBHm_Chr5g0073641 RchiOBHm_Chr5g0073651 RchiOBHm_Chr7g0236661
rosa_multiflora Rmu_co8179562.1_g000001 Rmu_co8343647.1_g000001 Rmu_sc0000041.1_g000017 Rmu_sc0000114.1_g000020 Rmu_sc0000286.1_g000006 Rmu_sc0000308.1_g000038 Rmu_sc0000365.1_g000061 Rmu_sc0000365.1_g000062 Rmu_sc0000538.1_g000060 Rmu_sc0000538.1_g000061 Rmu_sc0000586.1_g000016 Rmu_sc0000898.1_g000007 Rmu_sc0000913.1_g000003 Rmu_sc0000913.1_g000004 Rmu_sc0000996.1_g000006 Rmu_sc0000996.1_g000007 Rmu_sc0000998.1_g000003 Rmu_sc0001350.1_g000009 Rmu_sc0002079.1_g000009 Rmu_sc0002200.1_g000013 Rmu_sc0002226.1_g000025 Rmu_sc0002279.1_g000014 Rmu_sc0002478.1_g000014 Rmu_sc0002717.1_g000004 Rmu_sc0002868.1_g000027 Rmu_sc0002889.1_g000043 Rmu_sc0003023.1_g000001 Rmu_sc0003110.1_g000006 Rmu_sc0003226.1_g000028 Rmu_sc0003226.1_g000029 Rmu_sc0003337.1_g000053 Rmu_sc0003558.1_g000007 Rmu_sc0004345.1_g000014 Rmu_sc0004383.1_g000007 Rmu_sc0004888.1_g000021 Rmu_sc0005114.1_g000012 Rmu_sc0005223.1_g000019 Rmu_sc0005223.1_g000020 Rmu_sc0005639.1_g000025 Rmu_sc0005685.1_g000027 Rmu_sc0005992.1_g000002 Rmu_sc0006326.1_g000034 Rmu_sc0006326.1_g000035 Rmu_sc0007390.1_g000012 Rmu_sc0007451.1_g000006 Rmu_sc0007825.1_g000003 Rmu_sc0008600.1_g000023 Rmu_sc0009291.1_g000003 Rmu_sc0012046.1_g000001 Rmu_sc0012046.1_g000002 Rmu_sc0012710.1_g000001 Rmu_sc0015238.1_g000001 Rmu_sc0016125.1_g000003 Rmu_sc0016175.1_g000001 Rmu_sc0016898.1_g000001 Rmu_sc0017323.1_g000010 Rmu_sc0017874.1_g000002 Rmu_sc0019167.1_g000001 Rmu_sc0020815.1_g000006 Rmu_sc0025564.1_g000001 Rmu_sc0026418.1_g000001 Rmu_sc0035188.1_g000002 Rmu_sc0039254.1_g000001 Rmu_ssc0000120.1_g000015 Rmu_ssc0000120.1_g000016 Rmu_ssc0000330.1_g000023 Rmu_ssc0000433.1_g000004
rosa_roxburghii Rroxscaffold_1G00047130 Rroxscaffold_1G00051320 Rroxscaffold_1G00056600 Rroxscaffold_2G00109650 Rroxscaffold_2G00119980 Rroxscaffold_3G00222550 Rroxscaffold_3G00224980 Rroxscaffold_3G00251020 Rroxscaffold_6G00411190 Rroxscaffold_7G00166520 Rroxscaffold_7G00172920 Rroxscaffold_7G00191860 Rroxscaffold_7G00194430
rosa_rugosa Rorug01G0198900 Rorug01G0217300 Rorug01G0244500 Rorug02G0147400 Rorug02G0152200 Rorug02G0595500 Rorug02G0595600 Rorug03G0060500 Rorug03G0203000 Rorug03G0285800 Rorug04G0027200 Rorug04G0027300 Rorug04G0225800 Rorug05G0073400 Rorug05G0213300 Rorug05G0324600 Rorug05G0390900 Rorug05G0391000 Rorug05G0391100 Rorug05G0391200 Rorug05G0462900 Rorug05G0473000 Rorug06G0256500 Rorug07G0199000 Rorug07G0208800 Rorug07G0208800 Rorug07G0316600 Rorug07G0316700
rosa_samantha Rh2BG532400 Rh2CG581900 Rh3CG322600 Rh6AG079900 Rh6AG250800 Rh6AG496300 Rh6BG506100 Rh6CG126000 Rh6CG511700 Rh6DG109400 Rh6DG112700 Rh7CG104500 Rh7CG322000 Rh7CG431500
rosa_wichuraiana Rw0G020410 Rw1G009190 Rw1G014580 Rw1G021000 Rw1G022190 Rw2G025900 Rw2G029920 Rw2G037530 Rw3G018560 Rw3G020560 Rw4G008500 Rw4G022520 Rw5G019030 Rw5G031180 Rw5G044830 Rw6G005010 Rw6G006890 Rw6G011330 Rw6G011380 Rw6G023900 Rw7G028490 Rw7G030170 Rw7G030370 Rw7G032030 Rw7G032040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 200
AarI CACCTGC 1 cut(s) 296
Acc36I ACCTGC 1 cut(s) 296
AccB7I CCANNNNNTGG 2 cut(s) 256, 599
AclWI GGATC 1 cut(s) 843
AcoI YGGCCR 1 cut(s) 897
AcsI RAATTY 4 cut(s) 218, 287, 312, 762
AdeI CACNNNGTG 1 cut(s) 67
AfaI GTAC 1 cut(s) 404
AfiI CCNNNNNNNGG 2 cut(s) 256, 599
AflIII ACRYGT 1 cut(s) 1022
AgsI TTSAA 8 cut(s) 223, 287, 317, 510, 572, 707, 935, 969
AluBI AGCT 1 cut(s) 518
AluI AGCT 1 cut(s) 518
Alw21I GWGCWC 1 cut(s) 72
Alw26I GTCTC 1 cut(s) 650
AlwI GGATC 1 cut(s) 843
AoxI GGCC 1 cut(s) 897
ApeKI GCWGC 1 cut(s) 125
ApoI RAATTY 4 cut(s) 218, 287, 312, 762
Asp700I GAANNNNTTC 1 cut(s) 175
AsuHPI GGTGA 3 cut(s) 320, 800, 1022
BalI TGGCCA 1 cut(s) 899
Bbv12I GWGCWC 1 cut(s) 72
BbvI GCAGC 1 cut(s) 112
BccI CCATC 2 cut(s) 383, 693
BciVI GTATCC 1 cut(s) 771
BclI TGATCA 1 cut(s) 16
BcoDI GTCTC 1 cut(s) 650
BfaI CTAG 1 cut(s) 180
BfuAI ACCTGC 1 cut(s) 296
BfuI GTATCC 1 cut(s) 771
BglII AGATCT 1 cut(s) 394
BisI GCNGC 1 cut(s) 126
BlsI GCNGC 1 cut(s) 127
BplI GAGNNNNNCTC 2 cut(s) 677, 709
BpmI CTGGAG 1 cut(s) 767
BpuEI CTTGAG 2 cut(s) 18, 679
BsaBI GATNNNNATC 2 cut(s) 393, 626
BsaJI CCNNGG 1 cut(s) 900
Bsc4I CCNNNNNNNGG 2 cut(s) 256, 599
Bse1I ACTGG 2 cut(s) 604, 978
Bse8I GATNNNNATC 2 cut(s) 393, 626
BseDI CCNNGG 1 cut(s) 900
BseGI GGATG 2 cut(s) 19, 991
BseJI GATNNNNATC 2 cut(s) 393, 626
BseLI CCNNNNNNNGG 2 cut(s) 256, 599
BseNI ACTGG 2 cut(s) 604, 978
BseRI GAGGAG 1 cut(s) 845
BseXI GCAGC 1 cut(s) 112
BshFI GGCC 1 cut(s) 899
BsiHKAI GWGCWC 1 cut(s) 72
BslFI GGGAC 1 cut(s) 813
BslI CCNNNNNNNGG 2 cut(s) 256, 599
BsmAI GTCTC 1 cut(s) 650
BsmFI GGGAC 1 cut(s) 813
BsmI GAATGC 1 cut(s) 641
BsnI GGCC 1 cut(s) 899
Bsp1286I GDGCHC 1 cut(s) 72
Bsp1407I TGTACA 1 cut(s) 402
Bsp143I GATC 5 cut(s) 16, 340, 394, 835, 889
BspANI GGCC 1 cut(s) 899
BspMI ACCTGC 1 cut(s) 296
BspPI GGATC 1 cut(s) 843
BsrGI TGTACA 1 cut(s) 402
BsrI ACTGG 2 cut(s) 604, 978
BssECI CCNNGG 1 cut(s) 900
BssMI GATC 5 cut(s) 16, 340, 394, 835, 889
BssT1I CCWWGG 1 cut(s) 900
Bst4CI ACNGT 2 cut(s) 282, 486
Bst6I CTCTTC 3 cut(s) 93, 366, 713
BstAUI TGTACA 1 cut(s) 402
BstC8I GCNNGC 1 cut(s) 945
BstF5I GGATG 2 cut(s) 19, 991
BstKTI GATC 5 cut(s) 19, 343, 397, 838, 892
BstMAI GTCTC 1 cut(s) 650
BstMBI GATC 5 cut(s) 16, 340, 394, 835, 889
BstMWI GCNNNNNNNGC 1 cut(s) 152
BstNSI RCATGY 2 cut(s) 409, 1026
BstV1I GCAGC 1 cut(s) 112
BstX2I RGATCY 1 cut(s) 394
BstXI CCANNNNNNTGG 1 cut(s) 982
BstYI RGATCY 1 cut(s) 394
BsuI GTATCC 1 cut(s) 771
BsuRI GGCC 1 cut(s) 899
BtsCI GGATG 2 cut(s) 19, 991
BtsIMutI CAGTG 1 cut(s) 597
BveI ACCTGC 1 cut(s) 296
Cac8I GCNNGC 1 cut(s) 945
Csp6I GTAC 1 cut(s) 403
CviAII CATG 7 cut(s) 386, 406, 614, 774, 839, 871, 1023
CviJI RGCY 5 cut(s) 518, 662, 745, 899, 943
CviKI_1 RGCY 5 cut(s) 518, 662, 745, 899, 943
CviQI GTAC 1 cut(s) 403
DpnI GATC 5 cut(s) 18, 342, 396, 837, 891
DpnII GATC 5 cut(s) 16, 340, 394, 835, 889
DraIII CACNNNGTG 1 cut(s) 67
EaeI YGGCCR 1 cut(s) 897
Eam1104I CTCTTC 3 cut(s) 93, 366, 713
EarI CTCTTC 3 cut(s) 93, 366, 713
Eco130I CCWWGG 1 cut(s) 900
EcoRI GAATTC 1 cut(s) 287
EcoT14I CCWWGG 1 cut(s) 900
EcoT22I ATGCAT 1 cut(s) 411
ErhI CCWWGG 1 cut(s) 900
FaeI CATG 7 cut(s) 389, 409, 617, 777, 842, 874, 1026
FalI AAGNNNNNCTT 2 cut(s) 502, 534
FaqI GGGAC 1 cut(s) 813
FatI CATG 7 cut(s) 385, 405, 613, 773, 838, 870, 1022
FauNDI CATATG 1 cut(s) 894
FbaI TGATCA 1 cut(s) 16
Fnu4HI GCNGC 1 cut(s) 126
FokI GGATG 2 cut(s) 26, 998
Fsp4HI GCNGC 1 cut(s) 126
FspBI CTAG 1 cut(s) 180
GluI GCNGC 1 cut(s) 126
GsuI CTGGAG 1 cut(s) 767
HaeIII GGCC 1 cut(s) 899
Hin1II CATG 7 cut(s) 389, 409, 617, 777, 842, 874, 1026
HinfI GANTC 8 cut(s) 5, 211, 434, 458, 500, 692, 749, 965
HphI GGTGA 3 cut(s) 320, 800, 1022
Hpy166II GTNNAC 1 cut(s) 1013
Hpy188I TCNGA 4 cut(s) 10, 270, 417, 463
Hpy188III TCNNGA 6 cut(s) 35, 180, 368, 510, 696, 935
Hpy8I GTNNAC 1 cut(s) 1013
HpyAV CCTTC 2 cut(s) 373, 850
HpyCH4III ACNGT 2 cut(s) 282, 486
HpyCH4IV ACGT 1 cut(s) 234
HpyCH4V TGCA 4 cut(s) 146, 409, 590, 641
HpyF10VI GCNNNNNNNGC 1 cut(s) 152
HpySE526I ACGT 1 cut(s) 234
Hsp92II CATG 7 cut(s) 389, 409, 617, 777, 842, 874, 1026
Ksp22I TGATCA 1 cut(s) 16
Kzo9I GATC 5 cut(s) 16, 340, 394, 835, 889
LmnI GCTCC 1 cut(s) 75
LpnPI CCDG 8 cut(s) 141, 287, 291, 508, 585, 731, 957, 991
Lsp1109I GCAGC 1 cut(s) 112
MaeI CTAG 1 cut(s) 180
MaeII ACGT 1 cut(s) 234
MaeIII GTNAC 2 cut(s) 57, 478
MalI GATC 5 cut(s) 18, 342, 396, 837, 891
MboI GATC 5 cut(s) 16, 340, 394, 835, 889
MboII GAAGA 9 cut(s) 110, 195, 369, 383, 388, 429, 730, 797, 899
MflI RGATCY 1 cut(s) 394
MhlI GDGCHC 1 cut(s) 72
MlsI TGGCCA 1 cut(s) 899
MluNI TGGCCA 1 cut(s) 899
MlyI GAGTC 5 cut(s) 14, 467, 494, 686, 758
MnlI CCTC 8 cut(s) 4, 42, 235, 460, 789, 823, 826, 982
Mox20I TGGCCA 1 cut(s) 899
Mph1103I ATGCAT 1 cut(s) 411
MroXI GAANNNNTTC 1 cut(s) 175
MscI TGGCCA 1 cut(s) 899
MseI TTAA 5 cut(s) 50, 606, 647, 792, 843
MslI CAYNNNNRTG 1 cut(s) 980
Msp20I TGGCCA 1 cut(s) 899
Mva1269I GAATGC 1 cut(s) 641
MwoI GCNNNNNNNGC 1 cut(s) 152
NdeI CATATG 1 cut(s) 894
NdeII GATC 5 cut(s) 16, 340, 394, 835, 889
NlaIII CATG 7 cut(s) 389, 409, 617, 777, 842, 874, 1026
NmuCI GTSAC 1 cut(s) 57
NsiI ATGCAT 1 cut(s) 411
NspI RCATGY 2 cut(s) 409, 1026
PaqCI CACCTGC 1 cut(s) 296
PciI ACATGT 1 cut(s) 1022
PctI GAATGC 1 cut(s) 641
PdmI GAANNNNTTC 1 cut(s) 175
PfeI GAWTC 3 cut(s) 211, 434, 965
PflMI CCANNNNNTGG 2 cut(s) 256, 599
PkrI GCNGC 1 cut(s) 127
PleI GAGTC 5 cut(s) 13, 466, 494, 686, 757
PpsI GAGTC 5 cut(s) 13, 466, 494, 686, 757
PscI ACATGT 1 cut(s) 1022
PsiI TTATAA 1 cut(s) 200
PsuI RGATCY 1 cut(s) 394
RsaI GTAC 1 cut(s) 404
RsaNI GTAC 1 cut(s) 403
RseI CAYNNNNRTG 1 cut(s) 980
SaqAI TTAA 5 cut(s) 50, 606, 647, 792, 843
SatI GCNGC 1 cut(s) 126
Sau3AI GATC 5 cut(s) 16, 340, 394, 835, 889
SchI GAGTC 5 cut(s) 14, 467, 494, 686, 758
SduI GDGCHC 1 cut(s) 72
SetI ASST 6 cut(s) 237, 310, 520, 527, 906, 1012
SmiMI CAYNNNNRTG 1 cut(s) 980
SmlI CTYRAG 2 cut(s) 33, 694
SmoI CTYRAG 2 cut(s) 33, 694
SspI AATATT 2 cut(s) 322, 847
SspMI CTAG 1 cut(s) 180
StyI CCWWGG 1 cut(s) 900
TaaI ACNGT 2 cut(s) 282, 486
TaiI ACGT 1 cut(s) 237
TatI WGTACW 1 cut(s) 402
TfiI GAWTC 3 cut(s) 211, 434, 965
Tru1I TTAA 5 cut(s) 50, 606, 647, 792, 843
Tru9I TTAA 5 cut(s) 50, 606, 647, 792, 843
TscAI CASTG 1 cut(s) 604
TseFI GTSAC 1 cut(s) 57
TseI GCWGC 1 cut(s) 125
Tsp45I GTSAC 1 cut(s) 57
TspDTI ATGAA 3 cut(s) 755, 759, 942
TspGWI ACGGA 1 cut(s) 928
TspRI CASTG 1 cut(s) 604
Van91I CCANNNNNTGG 2 cut(s) 256, 599
XapI RAATTY 4 cut(s) 218, 287, 312, 762
XbaI TCTAGA 1 cut(s) 179
XceI RCATGY 2 cut(s) 409, 1026
XmnI GAANNNNTTC 1 cut(s) 175
XspI CTAG 1 cut(s) 180
Zsp2I ATGCAT 1 cut(s) 411
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.