Rmu_sc0003110.1_g000006

Protein FAR1-RELATED SEQUENCE 5-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003110.1
OG0000164
Physical Location & Seq
Forward (+)
30524 .. 31450
927 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003110.1_g000006.1.cds

Sequence Viewer

Length: 927 bp
atgtcaaatagtcaaagagcagagagtcaacattctttgttcaagaattatgtttctgatcagaatacgttggtggaatttatggttcagtttaagaggggacttcttcaccaacatcattatgagttagaggaggatcatattaatattaatgagaagccaaaaactgtcattttccttgacatagaagatcatatggctaaggtttatacacgtaaggtattttatgaagttcaagaacaattgaaagagagcttcaaatataaactagaatttctaagagaaaatgtcactcattgcctgtttaaggttatgcgaaagaacattgatacttgtaaatctcgtgaactgacttatgaaaaagtttctgattttgcatcatgcagctgtggaaagtttgagagtgaagggcttccatgtcggcatgttttgtcatatttgattaaaatccaagatgttgataaattgcctattcagtgcatcttgaagagatggactaaagctgcaagacagagtcttgtgttagattctgatggaatgaaggtaaaagataacaaagctttacttgcaaggaggaccaaactattccagcatgctacatatgcaattgataaggcaatggtgagtgatgaggctagtcagctctttatggaatgcttggatgctttcttggagaatcttaaaacattgattggtaatgaaagtggacaaagtgcagtagttttggagactaagattgatgctattcagcatatttttaaggaaccaaatcaagtgagggccaaagggtgtgggagaaggttgaaaaaaggaaaagagaagaggaaagttaaggtaaaggagagtcaaggtaggcaataccatggatgtgggctatttggtcagtcacatgacaaaagaaattgtccaacacttcatggaaagtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE SWIM

Protein Analysis

308

Amino Acids

35.76

Weight (kDa)

9.18

Isoelectric Point (pI)

43.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000164)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02320 FvH4_1g21472 FvH4_2g00813 FvH4_2g02512 FvH4_2g03921 FvH4_2g23460 FvH4_3g29141 FvH4_4g05791 FvH4_4g06321 FvH4_4g15595 FvH4_4g18162 FvH4_4g18163 FvH4_4g29541 FvH4_4g29541 FvH4_4g29541 FvH4_4g29541 FvH4_4g29541 FvH4_5g31093 FvH4_6g01982 FvH4_6g21931 FvH4_6g44691 FvH4_6g48541
prunus_persica Prupe.1G074100_v2.0.a1 Prupe.3G021400_v2.0.a1
pyrus_communis pycom02g18570 pycom14g00670
rosa_chinensis RchiOBHm_Chr1g0379201 RchiOBHm_Chr1g0379361 RchiOBHm_Chr4g0405981 RchiOBHm_Chr5g0073641 RchiOBHm_Chr5g0073651 RchiOBHm_Chr7g0236661
rosa_multiflora Rmu_co8179562.1_g000001 Rmu_co8343647.1_g000001 Rmu_sc0000041.1_g000017 Rmu_sc0000114.1_g000020 Rmu_sc0000286.1_g000006 Rmu_sc0000308.1_g000038 Rmu_sc0000365.1_g000061 Rmu_sc0000365.1_g000062 Rmu_sc0000538.1_g000060 Rmu_sc0000538.1_g000061 Rmu_sc0000586.1_g000016 Rmu_sc0000898.1_g000007 Rmu_sc0000913.1_g000003 Rmu_sc0000913.1_g000004 Rmu_sc0000996.1_g000006 Rmu_sc0000996.1_g000007 Rmu_sc0000998.1_g000003 Rmu_sc0001350.1_g000009 Rmu_sc0002079.1_g000009 Rmu_sc0002200.1_g000013 Rmu_sc0002226.1_g000025 Rmu_sc0002279.1_g000014 Rmu_sc0002478.1_g000014 Rmu_sc0002717.1_g000004 Rmu_sc0002868.1_g000027 Rmu_sc0002889.1_g000043 Rmu_sc0003023.1_g000001 Rmu_sc0003110.1_g000006 Rmu_sc0003226.1_g000028 Rmu_sc0003226.1_g000029 Rmu_sc0003337.1_g000053 Rmu_sc0003558.1_g000007 Rmu_sc0004345.1_g000014 Rmu_sc0004383.1_g000007 Rmu_sc0004888.1_g000021 Rmu_sc0005114.1_g000012 Rmu_sc0005223.1_g000019 Rmu_sc0005223.1_g000020 Rmu_sc0005639.1_g000025 Rmu_sc0005685.1_g000027 Rmu_sc0005992.1_g000002 Rmu_sc0006326.1_g000034 Rmu_sc0006326.1_g000035 Rmu_sc0007390.1_g000012 Rmu_sc0007451.1_g000006 Rmu_sc0007825.1_g000003 Rmu_sc0008600.1_g000023 Rmu_sc0009291.1_g000003 Rmu_sc0012046.1_g000001 Rmu_sc0012046.1_g000002 Rmu_sc0012710.1_g000001 Rmu_sc0015238.1_g000001 Rmu_sc0016125.1_g000003 Rmu_sc0016175.1_g000001 Rmu_sc0016898.1_g000001 Rmu_sc0017323.1_g000010 Rmu_sc0017874.1_g000002 Rmu_sc0019167.1_g000001 Rmu_sc0020815.1_g000006 Rmu_sc0025564.1_g000001 Rmu_sc0026418.1_g000001 Rmu_sc0035188.1_g000002 Rmu_sc0039254.1_g000001 Rmu_ssc0000120.1_g000015 Rmu_ssc0000120.1_g000016 Rmu_ssc0000330.1_g000023 Rmu_ssc0000433.1_g000004
rosa_roxburghii Rroxscaffold_1G00047130 Rroxscaffold_1G00051320 Rroxscaffold_1G00056600 Rroxscaffold_2G00109650 Rroxscaffold_2G00119980 Rroxscaffold_3G00222550 Rroxscaffold_3G00224980 Rroxscaffold_3G00251020 Rroxscaffold_6G00411190 Rroxscaffold_7G00166520 Rroxscaffold_7G00172920 Rroxscaffold_7G00191860 Rroxscaffold_7G00194430
rosa_rugosa Rorug01G0198900 Rorug01G0217300 Rorug01G0244500 Rorug02G0147400 Rorug02G0152200 Rorug02G0595500 Rorug02G0595600 Rorug03G0060500 Rorug03G0203000 Rorug03G0285800 Rorug04G0027200 Rorug04G0027300 Rorug04G0225800 Rorug05G0073400 Rorug05G0213300 Rorug05G0324600 Rorug05G0390900 Rorug05G0391000 Rorug05G0391100 Rorug05G0391200 Rorug05G0462900 Rorug05G0473000 Rorug06G0256500 Rorug07G0199000 Rorug07G0208800 Rorug07G0208800 Rorug07G0316600 Rorug07G0316700
rosa_samantha Rh2BG532400 Rh2CG581900 Rh3CG322600 Rh6AG079900 Rh6AG250800 Rh6AG496300 Rh6BG506100 Rh6CG126000 Rh6CG511700 Rh6DG109400 Rh6DG112700 Rh7CG104500 Rh7CG322000 Rh7CG431500
rosa_wichuraiana Rw0G020410 Rw1G009190 Rw1G014580 Rw1G021000 Rw1G022190 Rw2G025900 Rw2G029920 Rw2G037530 Rw3G018560 Rw3G020560 Rw4G008500 Rw4G022520 Rw5G019030 Rw5G031180 Rw5G044830 Rw6G005010 Rw6G006890 Rw6G011330 Rw6G011380 Rw6G023900 Rw7G028490 Rw7G030170 Rw7G030370 Rw7G032030 Rw7G032040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 144
AcsI RAATTY 2 cut(s) 77, 272
AfiI CCNNNNNNNGG 1 cut(s) 307
AflIII ACRYGT 1 cut(s) 212
AgsI TTSAA 6 cut(s) 43, 236, 247, 259, 487, 805
AluBI AGCT 5 cut(s) 255, 387, 503, 560, 643
AluI AGCT 5 cut(s) 255, 387, 503, 560, 643
Alw26I GTCTC 1 cut(s) 722
AlwI GGATC 1 cut(s) 144
AoxI GGCC 1 cut(s) 780
ApeKI GCWGC 2 cut(s) 384, 503
ApoI RAATTY 2 cut(s) 77, 272
AseI ATTAAT 2 cut(s) 144, 150
Asp700I GAANNNNTTC 1 cut(s) 411
AspS9I GGNCC 2 cut(s) 576, 780
AsuHPI GGTGA 2 cut(s) 101, 634
AvaII GGWCC 1 cut(s) 576
BauI CACGAG 1 cut(s) 342
BbvI GCAGC 2 cut(s) 396, 490
BccI CCATC 2 cut(s) 486, 527
BclI TGATCA 1 cut(s) 58
BcoDI GTCTC 1 cut(s) 722
BfaI CTAG 2 cut(s) 269, 636
BisI GCNGC 2 cut(s) 385, 504
BlsI GCNGC 2 cut(s) 386, 505
Bme18I GGWCC 1 cut(s) 576
BmgT120I GGNCC 2 cut(s) 576, 780
BmiI GGNNCC 1 cut(s) 765
BmsI GCATC 4 cut(s) 386, 489, 652, 730
Bpu10I CCTNAGC 1 cut(s) 201
BsaAI YACGTR 1 cut(s) 215
BsaBI GATNNNNATC 1 cut(s) 446
BsaJI CCNNGG 1 cut(s) 862
Bsc4I CCNNNNNNNGG 1 cut(s) 307
Bse3DI GCAATG 2 cut(s) 295, 624
Bse8I GATNNNNATC 1 cut(s) 446
BseDI CCNNGG 1 cut(s) 862
BseGI GGATG 2 cut(s) 667, 872
BseJI GATNNNNATC 1 cut(s) 446
BseLI CCNNNNNNNGG 1 cut(s) 307
BseMI GCAATG 2 cut(s) 295, 624
BseRI GAGGAG 1 cut(s) 146
BseXI GCAGC 2 cut(s) 396, 490
BsgI GTGCAG 1 cut(s) 735
BshFI GGCC 1 cut(s) 782
BslFI GGGAC 1 cut(s) 114
BslI CCNNNNNNNGG 1 cut(s) 307
BsmAI GTCTC 1 cut(s) 722
BsmFI GGGAC 1 cut(s) 114
BsmI GAATGC 1 cut(s) 659
BsnI GGCC 1 cut(s) 782
Bsp143I GATC 3 cut(s) 58, 136, 190
Bsp19I CCATGG 1 cut(s) 862
BspANI GGCC 1 cut(s) 782
BspLI GGNNCC 1 cut(s) 765
BspPI GGATC 1 cut(s) 144
BsrDI GCAATG 2 cut(s) 295, 624
BssECI CCNNGG 1 cut(s) 862
BssMI GATC 3 cut(s) 58, 136, 190
BssSI CACGAG 1 cut(s) 342
BssT1I CCWWGG 1 cut(s) 862
Bst2BI CACGAG 1 cut(s) 342
Bst4CI ACNGT 1 cut(s) 169
Bst6I CTCTTC 2 cut(s) 482, 815
BstBAI YACGTR 1 cut(s) 215
BstC8I GCNNGC 1 cut(s) 594
BstDEI CTNAG 3 cut(s) 201, 278, 732
BstDSI CCRYGG 1 cut(s) 862
BstENI CCTNNNNNAGG 1 cut(s) 305
BstF5I GGATG 2 cut(s) 667, 872
BstKTI GATC 3 cut(s) 61, 139, 193
BstMAI GTCTC 1 cut(s) 722
BstMBI GATC 3 cut(s) 58, 136, 190
BstMWI GCNNNNNNNGC 2 cut(s) 566, 602
BstNSI RCATGY 2 cut(s) 428, 596
BstV1I GCAGC 2 cut(s) 396, 490
BstXI CCANNNNNNTGG 1 cut(s) 869
BsuRI GGCC 1 cut(s) 782
BtgI CCRYGG 1 cut(s) 862
BtsCI GGATG 2 cut(s) 667, 872
BtsIMutI CAGTG 1 cut(s) 482
Cac8I GCNNGC 1 cut(s) 594
Cfr13I GGNCC 2 cut(s) 576, 780
CspCI CAANNNNNGTGG 2 cut(s) 772, 807
CviAII CATG 7 cut(s) 381, 417, 425, 593, 863, 890, 917
DdeI CTNAG 3 cut(s) 201, 278, 732
DpnI GATC 3 cut(s) 60, 138, 192
DpnII GATC 3 cut(s) 58, 136, 190
Eam1104I CTCTTC 2 cut(s) 482, 815
EarI CTCTTC 2 cut(s) 482, 815
Eco130I CCWWGG 1 cut(s) 862
Eco47I GGWCC 1 cut(s) 576
EcoNI CCTNNNNNAGG 1 cut(s) 305
EcoT14I CCWWGG 1 cut(s) 862
ErhI CCWWGG 1 cut(s) 862
FaeI CATG 7 cut(s) 384, 420, 428, 596, 866, 893, 920
FalI AAGNNNNNCTT 2 cut(s) 549, 581
FaqI GGGAC 1 cut(s) 114
FatI CATG 7 cut(s) 380, 416, 424, 592, 862, 889, 916
FauNDI CATATG 2 cut(s) 195, 601
FbaI TGATCA 1 cut(s) 58
Fnu4HI GCNGC 2 cut(s) 385, 504
FokI GGATG 2 cut(s) 674, 879
Fsp4HI GCNGC 2 cut(s) 385, 504
FspBI CTAG 2 cut(s) 269, 636
GluI GCNGC 2 cut(s) 385, 504
HaeIII GGCC 1 cut(s) 782
Hin1II CATG 7 cut(s) 384, 420, 428, 596, 866, 893, 920
HincII GTYRAC 1 cut(s) 29
HindII GTYRAC 1 cut(s) 29
HindIII AAGCTT 1 cut(s) 558
HinfI GANTC 5 cut(s) 25, 514, 527, 676, 844
HphI GGTGA 2 cut(s) 101, 634
Hpy166II GTNNAC 3 cut(s) 29, 347, 707
Hpy188I TCNGA 4 cut(s) 58, 63, 370, 532
Hpy188III TCNNGA 4 cut(s) 43, 236, 344, 484
Hpy8I GTNNAC 3 cut(s) 29, 347, 707
HpyAV CCTTC 3 cut(s) 401, 535, 792
HpyCH4III ACNGT 1 cut(s) 169
HpyCH4IV ACGT 2 cut(s) 68, 214
HpyCH4V TGCA 7 cut(s) 377, 384, 480, 506, 569, 605, 716
HpyF10VI GCNNNNNNNGC 2 cut(s) 566, 602
HpyF3I CTNAG 3 cut(s) 201, 278, 732
HpySE526I ACGT 2 cut(s) 68, 214
Hsp92II CATG 7 cut(s) 384, 420, 428, 596, 866, 893, 920
Ksp22I TGATCA 1 cut(s) 58
Kzo9I GATC 3 cut(s) 58, 136, 190
LpnPI CCDG 2 cut(s) 314, 602
Lsp1109I GCAGC 2 cut(s) 396, 490
LweI GCATC 4 cut(s) 386, 489, 652, 730
MaeI CTAG 2 cut(s) 269, 636
MaeII ACGT 2 cut(s) 68, 214
MaeIII GTNAC 2 cut(s) 289, 885
MalI GATC 3 cut(s) 60, 138, 192
MboI GATC 3 cut(s) 58, 136, 190
MboII GAAGA 4 cut(s) 98, 200, 499, 832
MfeI CAATTG 2 cut(s) 242, 606
MluCI AATT 7 cut(s) 46, 77, 242, 272, 464, 606, 901
MlyI GAGTC 3 cut(s) 34, 523, 853
MnlI CCTC 7 cut(s) 90, 124, 127, 567, 625, 771, 816
MroXI GAANNNNTTC 1 cut(s) 411
MseI TTAA 8 cut(s) 93, 144, 150, 306, 444, 681, 759, 831
MslI CAYNNNNRTG 2 cut(s) 120, 867
MspA1I CMGCKG 1 cut(s) 387
MunI CAATTG 2 cut(s) 242, 606
Mva1269I GAATGC 1 cut(s) 659
MwoI GCNNNNNNNGC 2 cut(s) 566, 602
NcoI CCATGG 1 cut(s) 862
NdeI CATATG 2 cut(s) 195, 601
NdeII GATC 3 cut(s) 58, 136, 190
NlaIII CATG 7 cut(s) 384, 420, 428, 596, 866, 893, 920
NlaIV GGNNCC 1 cut(s) 765
NmuCI GTSAC 2 cut(s) 289, 885
NspI RCATGY 2 cut(s) 428, 596
PaeI GCATGC 1 cut(s) 596
PctI GAATGC 1 cut(s) 659
PdmI GAANNNNTTC 1 cut(s) 411
PfeI GAWTC 2 cut(s) 527, 676
PflFI GACNNNGTC 1 cut(s) 513
PkrI GCNGC 2 cut(s) 386, 505
PleI GAGTC 3 cut(s) 33, 522, 852
PpsI GAGTC 3 cut(s) 33, 522, 852
Ppu21I YACGTR 1 cut(s) 215
PshBI ATTAAT 2 cut(s) 144, 150
PspN4I GGNNCC 1 cut(s) 765
PspPI GGNCC 2 cut(s) 576, 780
PsyI GACNNNGTC 1 cut(s) 513
PvuII CAGCTG 1 cut(s) 387
RseI CAYNNNNRTG 2 cut(s) 120, 867
SaqAI TTAA 8 cut(s) 93, 144, 150, 306, 444, 681, 759, 831
SatI GCNGC 2 cut(s) 385, 504
Sau3AI GATC 3 cut(s) 58, 136, 190
Sau96I GGNCC 2 cut(s) 576, 780
SchI GAGTC 3 cut(s) 34, 523, 853
SfaNI GCATC 4 cut(s) 386, 489, 652, 730
SinI GGWCC 1 cut(s) 576
SmiMI CAYNNNNRTG 2 cut(s) 120, 867
SphI GCATGC 1 cut(s) 596
Sse9I AATT 7 cut(s) 46, 77, 242, 272, 464, 606, 901
SspI AATATT 1 cut(s) 148
SspMI CTAG 2 cut(s) 269, 636
StyI CCWWGG 1 cut(s) 862
TaaI ACNGT 1 cut(s) 169
TaiI ACGT 2 cut(s) 71, 217
TasI AATT 7 cut(s) 46, 77, 242, 272, 464, 606, 901
TfiI GAWTC 2 cut(s) 527, 676
Tru1I TTAA 8 cut(s) 93, 144, 150, 306, 444, 681, 759, 831
Tru9I TTAA 8 cut(s) 93, 144, 150, 306, 444, 681, 759, 831
TscAI CASTG 1 cut(s) 482
TseFI GTSAC 2 cut(s) 289, 885
TseI GCWGC 2 cut(s) 384, 503
Tsp45I GTSAC 2 cut(s) 289, 885
TspDTI ATGAA 5 cut(s) 243, 372, 554, 714, 905
TspRI CASTG 1 cut(s) 482
Tth111I GACNNNGTC 1 cut(s) 513
VpaK11BI GGWCC 1 cut(s) 576
VspI ATTAAT 2 cut(s) 144, 150
XagI CCTNNNNNAGG 1 cut(s) 305
XapI RAATTY 2 cut(s) 77, 272
XceI RCATGY 2 cut(s) 428, 596
XmnI GAANNNNTTC 1 cut(s) 411
XspI CTAG 2 cut(s) 269, 636
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.