Rmu_sc0005223.1_g000019

Protein FAR1-RELATED SEQUENCE 5-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005223.1
OG0000164
Physical Location & Seq
Forward (+)
68515 .. 69219
705 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005223.1_g000019.1.cds

Sequence Viewer

Length: 705 bp
atgtttcaggcaatgaatttatggtcagtttcatgttctgctgagaccaccaatgtgtacattcctcaagtagcagatgtattgaagcctgcaaaaagccttgaatttagaacactagatgaagtttttgaattttacaacaagtatgcttttgaagctgggtttagtattcagagaagtactactgccaggagtaaagatggttatgaaattatacgacaagaattttgttgtcgcaaagaagggcattcaaacaagaaaatgcctctgccaaaaagacggaaagggattataagaacgggttgtctagcaaagattgcagctgtgaagagatctagcatatatgtagtcacccaatttatggaggctcataaccatcctttgacagctccagagagagttcatttgttactatctcatcatcaagtttcaaatgacaccaaatgcttaaccatggaacttggattggtaaatattcctacccaccaacaaatcagtttgcttgaagttaaatcattaggaattgagaatatgggttgcacagggaaagatatatacaattatggaagagataagcgagaagagttgaagggacatgatggagatatgttgtatgctcattttttatcacagcaggagaagaattcatttttcactttcaagatagaggaagacaatgacaatagaatcaaacattgtttttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE SWIM

Protein Analysis

234

Amino Acids

26.95

Weight (kDa)

8.6

Isoelectric Point (pI)

45.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000164)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02320 FvH4_1g21472 FvH4_2g00813 FvH4_2g02512 FvH4_2g03921 FvH4_2g23460 FvH4_3g29141 FvH4_4g05791 FvH4_4g06321 FvH4_4g15595 FvH4_4g18162 FvH4_4g18163 FvH4_4g29541 FvH4_4g29541 FvH4_4g29541 FvH4_4g29541 FvH4_4g29541 FvH4_5g31093 FvH4_6g01982 FvH4_6g21931 FvH4_6g44691 FvH4_6g48541
prunus_persica Prupe.1G074100_v2.0.a1 Prupe.3G021400_v2.0.a1
pyrus_communis pycom02g18570 pycom14g00670
rosa_chinensis RchiOBHm_Chr1g0379201 RchiOBHm_Chr1g0379361 RchiOBHm_Chr4g0405981 RchiOBHm_Chr5g0073641 RchiOBHm_Chr5g0073651 RchiOBHm_Chr7g0236661
rosa_multiflora Rmu_co8179562.1_g000001 Rmu_co8343647.1_g000001 Rmu_sc0000041.1_g000017 Rmu_sc0000114.1_g000020 Rmu_sc0000286.1_g000006 Rmu_sc0000308.1_g000038 Rmu_sc0000365.1_g000061 Rmu_sc0000365.1_g000062 Rmu_sc0000538.1_g000060 Rmu_sc0000538.1_g000061 Rmu_sc0000586.1_g000016 Rmu_sc0000898.1_g000007 Rmu_sc0000913.1_g000003 Rmu_sc0000913.1_g000004 Rmu_sc0000996.1_g000006 Rmu_sc0000996.1_g000007 Rmu_sc0000998.1_g000003 Rmu_sc0001350.1_g000009 Rmu_sc0002079.1_g000009 Rmu_sc0002200.1_g000013 Rmu_sc0002226.1_g000025 Rmu_sc0002279.1_g000014 Rmu_sc0002478.1_g000014 Rmu_sc0002717.1_g000004 Rmu_sc0002868.1_g000027 Rmu_sc0002889.1_g000043 Rmu_sc0003023.1_g000001 Rmu_sc0003110.1_g000006 Rmu_sc0003226.1_g000028 Rmu_sc0003226.1_g000029 Rmu_sc0003337.1_g000053 Rmu_sc0003558.1_g000007 Rmu_sc0004345.1_g000014 Rmu_sc0004383.1_g000007 Rmu_sc0004888.1_g000021 Rmu_sc0005114.1_g000012 Rmu_sc0005223.1_g000019 Rmu_sc0005223.1_g000020 Rmu_sc0005639.1_g000025 Rmu_sc0005685.1_g000027 Rmu_sc0005992.1_g000002 Rmu_sc0006326.1_g000034 Rmu_sc0006326.1_g000035 Rmu_sc0007390.1_g000012 Rmu_sc0007451.1_g000006 Rmu_sc0007825.1_g000003 Rmu_sc0008600.1_g000023 Rmu_sc0009291.1_g000003 Rmu_sc0012046.1_g000001 Rmu_sc0012046.1_g000002 Rmu_sc0012710.1_g000001 Rmu_sc0015238.1_g000001 Rmu_sc0016125.1_g000003 Rmu_sc0016175.1_g000001 Rmu_sc0016898.1_g000001 Rmu_sc0017323.1_g000010 Rmu_sc0017874.1_g000002 Rmu_sc0019167.1_g000001 Rmu_sc0020815.1_g000006 Rmu_sc0025564.1_g000001 Rmu_sc0026418.1_g000001 Rmu_sc0035188.1_g000002 Rmu_sc0039254.1_g000001 Rmu_ssc0000120.1_g000015 Rmu_ssc0000120.1_g000016 Rmu_ssc0000330.1_g000023 Rmu_ssc0000433.1_g000004
rosa_roxburghii Rroxscaffold_1G00047130 Rroxscaffold_1G00051320 Rroxscaffold_1G00056600 Rroxscaffold_2G00109650 Rroxscaffold_2G00119980 Rroxscaffold_3G00222550 Rroxscaffold_3G00224980 Rroxscaffold_3G00251020 Rroxscaffold_6G00411190 Rroxscaffold_7G00166520 Rroxscaffold_7G00172920 Rroxscaffold_7G00191860 Rroxscaffold_7G00194430
rosa_rugosa Rorug01G0198900 Rorug01G0217300 Rorug01G0244500 Rorug02G0147400 Rorug02G0152200 Rorug02G0595500 Rorug02G0595600 Rorug03G0060500 Rorug03G0203000 Rorug03G0285800 Rorug04G0027200 Rorug04G0027300 Rorug04G0225800 Rorug05G0073400 Rorug05G0213300 Rorug05G0324600 Rorug05G0390900 Rorug05G0391000 Rorug05G0391100 Rorug05G0391200 Rorug05G0462900 Rorug05G0473000 Rorug06G0256500 Rorug07G0199000 Rorug07G0208800 Rorug07G0208800 Rorug07G0316600 Rorug07G0316700
rosa_samantha Rh2BG532400 Rh2CG581900 Rh3CG322600 Rh6AG079900 Rh6AG250800 Rh6AG496300 Rh6BG506100 Rh6CG126000 Rh6CG511700 Rh6DG109400 Rh6DG112700 Rh7CG104500 Rh7CG322000 Rh7CG431500
rosa_wichuraiana Rw0G020410 Rw1G009190 Rw1G014580 Rw1G021000 Rw1G022190 Rw2G025900 Rw2G029920 Rw2G037530 Rw3G018560 Rw3G020560 Rw4G008500 Rw4G022520 Rw5G019030 Rw5G031180 Rw5G044830 Rw6G005010 Rw6G006890 Rw6G011330 Rw6G011380 Rw6G023900 Rw7G028490 Rw7G030170 Rw7G030370 Rw7G032030 Rw7G032040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 293
AccB7I CCANNNNNTGG 1 cut(s) 361
AcsI RAATTY 5 cut(s) 16, 104, 131, 224, 643
AfaI GTAC 2 cut(s) 59, 181
AfiI CCNNNNNNNGG 1 cut(s) 361
AgsI TTSAA 9 cut(s) 85, 104, 131, 155, 252, 432, 506, 589, 661
AjnI CCWGG 1 cut(s) 188
AleI CACNNNNGTG 1 cut(s) 53
AluBI AGCT 3 cut(s) 158, 323, 389
AluI AGCT 3 cut(s) 158, 323, 389
Alw26I GTCTC 1 cut(s) 38
ApeKI GCWGC 1 cut(s) 320
ApoI RAATTY 5 cut(s) 16, 104, 131, 224, 643
ArsI GACNNNNNNTTYG 2 cut(s) 210, 242
AsuHPI GGTGA 1 cut(s) 343
BbsI GAAGAC 1 cut(s) 678
BbvI GCAGC 1 cut(s) 332
BccI CCATC 3 cut(s) 194, 384, 593
BciT130I CCWGG 1 cut(s) 190
BcoDI GTCTC 1 cut(s) 38
BfaI CTAG 3 cut(s) 116, 308, 336
BglII AGATCT 1 cut(s) 332
BisI GCNGC 1 cut(s) 321
BlsI GCNGC 1 cut(s) 322
BmcAI AGTACT 1 cut(s) 181
Bme1390I CCNGG 1 cut(s) 190
BmrFI CCNGG 1 cut(s) 190
BpiI GAAGAC 1 cut(s) 678
BpmI CTGGAG 1 cut(s) 375
BpuEI CTTGAG 1 cut(s) 51
BsaI GGTCTC 1 cut(s) 38
BsaJI CCNNGG 1 cut(s) 453
Bsc4I CCNNNNNNNGG 1 cut(s) 361
Bse3DI GCAATG 1 cut(s) 18
BseBI CCWGG 1 cut(s) 190
BseDI CCNNGG 1 cut(s) 453
BseGI GGATG 1 cut(s) 376
BseLI CCNNNNNNNGG 1 cut(s) 361
BseMI GCAATG 1 cut(s) 18
BseMII CTCAG 1 cut(s) 33
BseXI GCAGC 1 cut(s) 332
BseYI CCCAGC 1 cut(s) 158
BslFI GGGAC 1 cut(s) 606
BslI CCNNNNNNNGG 1 cut(s) 361
BsmAI GTCTC 1 cut(s) 38
BsmFI GGGAC 1 cut(s) 606
BsmI GAATGC 1 cut(s) 247
Bso31I GGTCTC 1 cut(s) 38
Bsp1407I TGTACA 1 cut(s) 57
Bsp143I GATC 1 cut(s) 332
Bsp19I CCATGG 1 cut(s) 453
BspCNI CTCAG 1 cut(s) 34
BspTNI GGTCTC 1 cut(s) 38
BsrDI GCAATG 1 cut(s) 18
BsrGI TGTACA 1 cut(s) 57
BssECI CCNNGG 1 cut(s) 453
BssMI GATC 1 cut(s) 332
BssT1I CCWWGG 1 cut(s) 453
Bst2UI CCWGG 1 cut(s) 190
Bst6I CTCTTC 3 cut(s) 323, 562, 576
BstAPI GCANNNNNTGC 1 cut(s) 317
BstAUI TGTACA 1 cut(s) 57
BstC8I GCNNGC 1 cut(s) 90
BstDEI CTNAG 1 cut(s) 42
BstDSI CCRYGG 1 cut(s) 453
BstF5I GGATG 1 cut(s) 376
BstKTI GATC 1 cut(s) 335
BstMAI GTCTC 1 cut(s) 38
BstMBI GATC 1 cut(s) 332
BstMWI GCNNNNNNNGC 2 cut(s) 155, 317
BstNI CCWGG 1 cut(s) 190
BstSCI CCNGG 1 cut(s) 188
BstV1I GCAGC 1 cut(s) 332
BstV2I GAAGAC 1 cut(s) 678
BstX2I RGATCY 1 cut(s) 332
BstYI RGATCY 1 cut(s) 332
BtgI CCRYGG 1 cut(s) 453
BtsCI GGATG 1 cut(s) 376
Cac8I GCNNGC 1 cut(s) 90
Csp6I GTAC 2 cut(s) 58, 180
CviAII CATG 3 cut(s) 33, 454, 596
CviJI RGCY 6 cut(s) 88, 99, 158, 323, 368, 389
CviKI_1 RGCY 6 cut(s) 88, 99, 158, 323, 368, 389
CviQI GTAC 2 cut(s) 58, 180
DdeI CTNAG 1 cut(s) 42
DpnI GATC 1 cut(s) 334
DpnII GATC 1 cut(s) 332
Eam1104I CTCTTC 3 cut(s) 323, 562, 576
EarI CTCTTC 3 cut(s) 323, 562, 576
Eco130I CCWWGG 1 cut(s) 453
Eco31I GGTCTC 1 cut(s) 38
EcoRI GAATTC 1 cut(s) 643
EcoRII CCWGG 1 cut(s) 188
EcoT14I CCWWGG 1 cut(s) 453
ErhI CCWWGG 1 cut(s) 453
FaeI CATG 3 cut(s) 36, 457, 599
FaqI GGGAC 1 cut(s) 606
FatI CATG 3 cut(s) 32, 453, 595
Fnu4HI GCNGC 1 cut(s) 321
FokI GGATG 1 cut(s) 363
Fsp4HI GCNGC 1 cut(s) 321
FspBI CTAG 3 cut(s) 116, 308, 336
GluI GCNGC 1 cut(s) 321
GsaI CCCAGC 1 cut(s) 162
GsuI CTGGAG 1 cut(s) 375
Hin1II CATG 3 cut(s) 36, 457, 599
HinfI GANTC 1 cut(s) 687
HphI GGTGA 1 cut(s) 343
Hpy166II GTNNAC 1 cut(s) 58
Hpy188I TCNGA 1 cut(s) 174
Hpy188III TCNNGA 2 cut(s) 392, 661
Hpy8I GTNNAC 1 cut(s) 58
HpyAV CCTTC 2 cut(s) 236, 583
HpyCH4V TGCA 3 cut(s) 92, 320, 540
HpyF10VI GCNNNNNNNGC 2 cut(s) 155, 317
HpyF3I CTNAG 1 cut(s) 42
Hsp92II CATG 3 cut(s) 36, 457, 599
Kzo9I GATC 1 cut(s) 332
LmnI GCTCC 1 cut(s) 394
LpnPI CCDG 7 cut(s) 102, 144, 175, 202, 405, 528, 620
Lsp1109I GCAGC 1 cut(s) 332
MaeI CTAG 3 cut(s) 116, 308, 336
MaeIII GTNAC 2 cut(s) 349, 408
MalI GATC 1 cut(s) 334
MboI GATC 1 cut(s) 332
MboII GAAGA 5 cut(s) 340, 579, 593, 652, 683
MflI RGATCY 1 cut(s) 332
MluCI AATT 9 cut(s) 16, 104, 131, 210, 224, 356, 522, 559, 643
MnlI CCTC 4 cut(s) 75, 276, 358, 661
MseI TTAA 2 cut(s) 449, 510
MslI CAYNNNNRTG 1 cut(s) 53
MspA1I CMGCKG 1 cut(s) 323
MspR9I CCNGG 1 cut(s) 190
Mva1269I GAATGC 1 cut(s) 247
MvaI CCWGG 1 cut(s) 190
MwoI GCNNNNNNNGC 2 cut(s) 155, 317
NcoI CCATGG 1 cut(s) 453
NdeII GATC 1 cut(s) 332
NlaIII CATG 3 cut(s) 36, 457, 599
NmuCI GTSAC 1 cut(s) 349
OliI CACNNNNGTG 1 cut(s) 53
PctI GAATGC 1 cut(s) 247
PfeI GAWTC 1 cut(s) 687
PflMI CCANNNNNTGG 1 cut(s) 361
PkrI GCNGC 1 cut(s) 322
PsiI TTATAA 1 cut(s) 293
Psp6I CCWGG 1 cut(s) 188
PspFI CCCAGC 1 cut(s) 158
PspGI CCWGG 1 cut(s) 188
PsuI RGATCY 1 cut(s) 332
PvuII CAGCTG 1 cut(s) 323
RsaI GTAC 2 cut(s) 59, 181
RsaNI GTAC 2 cut(s) 58, 180
RseI CAYNNNNRTG 1 cut(s) 53
SaqAI TTAA 2 cut(s) 449, 510
SatI GCNGC 1 cut(s) 321
Sau3AI GATC 1 cut(s) 332
ScaI AGTACT 1 cut(s) 181
ScrFI CCNGG 1 cut(s) 190
SetI ASST 3 cut(s) 160, 325, 391
SmiMI CAYNNNNRTG 1 cut(s) 53
SmlI CTYRAG 1 cut(s) 66
SmoI CTYRAG 1 cut(s) 66
Sse9I AATT 9 cut(s) 16, 104, 131, 210, 224, 356, 522, 559, 643
SspI AATATT 1 cut(s) 475
SspMI CTAG 3 cut(s) 116, 308, 336
StyD4I CCNGG 1 cut(s) 188
StyI CCWWGG 1 cut(s) 453
TasI AATT 9 cut(s) 16, 104, 131, 210, 224, 356, 522, 559, 643
TatI WGTACW 2 cut(s) 57, 179
TfiI GAWTC 1 cut(s) 687
Tru1I TTAA 2 cut(s) 449, 510
Tru9I TTAA 2 cut(s) 449, 510
TseFI GTSAC 1 cut(s) 349
TseI GCWGC 1 cut(s) 320
Tsp45I GTSAC 1 cut(s) 349
TspDTI ATGAA 6 cut(s) 21, 29, 135, 222, 392, 636
TspGWI ACGGA 1 cut(s) 295
Van91I CCANNNNNTGG 1 cut(s) 361
XapI RAATTY 5 cut(s) 16, 104, 131, 224, 643
XspI CTAG 3 cut(s) 116, 308, 336
ZrmI AGTACT 1 cut(s) 181
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.